Array 1 108305-107971 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADLQJ010000008.1 Nocardia farcinica strain BJ06-0138 NODE_8_length_241246_cov_41.113197, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 108304 29 100.0 32 ............................. CGCATCGTGACCTGAGCCTTCTTCGGCTTGAC 108243 29 100.0 32 ............................. CCGTACCACCACACCGGGACGTCGCCGCGATT 108182 29 100.0 32 ............................. TCGAAGTTGTACTGCAGCACGGTCGCGATACC 108121 29 100.0 32 ............................. TCGCCTCTGGAGCCTGGCACGAAACGCTCGGC 108060 29 100.0 32 ............................. GCCGCAACTTCCTCGCTCTGGGTGTGGCCGCC 107999 29 93.1 0 ..............T.T............ | ========== ====== ====== ====== ============================= ================================ ================== 6 29 98.9 32 GTGCTCCCCGCGCACGCGGGGATGAGCCC # Left flank : GCTCACCCTGGATGGGTATGGAACGGTGCTCACCGAAGTCGCCGCAACCTTGGAACCGCATCGCCTGGCCGGTCACCTCTACGATCTCGCCCGAGCCTTCACGGCCTTCTACGACACCTGCCCCGTCCTCACCGCCCCCGACCAGGTCCGCGGCAACCGCCTGGCCCTCACCCAGCTCACCGCCCGAACCCTCGCCCACGGCCTGGGACTCCTGGGAATCGCCGCACCGGAACGACTCTGAACAGGGGCGTGGTAGCCCGAACTCCGCCGACGAGGTCCTGTTGTTCATGCGGGACGACAAGCCCCGAGATTCCCGGCCCGGGAATGTGGGCATTGCCGGGCGGCTCGCGACCCCGGCGAAAGGCAACTTGAATGGGAGTTCCACGGGACCGGCGGCGTACGATGGCGGCGGCCTGCCCATTCTGTCCCTCAGCGAGGTACATCGATTGAAAGTGAATGAAAACCGGGATTCGGGGCCGAGAACCCGCAGGTCAAGAAGT # Right flank : TGGCTCTCGTGTCCTGCGTCGACGGCTACGAGATGCCCCCGCGAACGCGGAAATGGCTGGGGCGCCGCTTTCCGCGGTCGTGAAGGCGCTGCCATCGCCCTTCCGCGCGGAGGTCGACCCCCTTTGACGGCGGCTGTTCCAATTTCGGAGCAGGAGGGTCAGCTCACCCCCACCAGCGCCGCCAACGCCATTTCGCGTAGGGCCGGTCGGACGCGCTCCGCGTCGGAGGCGGTGGCGCTGTGCGGGGTCGAGTTCATCAGTCCGAACACCGCGTGGGCCCGTACGCGGGCTTCGCCTTCGGACAGCTGTGGGTGGACCCGCTGTAGCGCGTCCACCCACAGTTCGACGTATTGCCGCTGGGTGCGGCGGACGCGGCGGCGGGCGTCGTCGGGCATCTGGTCCAGGTCGCGGTCCTGGATGCGGATGAGTTCGGGCTCGCCGAGGGCGAAGTCGAGGTGGAAGTCGACGAGTCCGGCGATGACCGATCGCGGGTCTCCGCC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCACGCGGGGATGAGCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCACGCGGGGATGAGCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 116135-115498 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADLQJ010000008.1 Nocardia farcinica strain BJ06-0138 NODE_8_length_241246_cov_41.113197, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 116134 29 100.0 32 ............................. AGGTCGCACACGCTGTTCACGAACACCCTGCG 116073 29 100.0 32 ............................. TCGCCGCCGTCGGGGTCAGGGACCTCGTAGGT 116012 29 100.0 32 ............................. CAGCTCAGAAAGCCGTCGAGCAGCGTGCCGGT 115951 29 100.0 32 ............................. AGTCCTCGAGGCGGCCCGACCACCGTGCCCCG 115890 29 100.0 32 ............................. GGCGTCACGGGGAATGTCCTGGTCAGGTCAGC 115829 29 100.0 32 ............................. CACAAATCGCGCACGCGAGGCACATTGTCGAA 115768 29 96.6 32 ..............A.............. CCTTGAGGCCGGAGTTCCCGCTCCAGCCTCAA 115707 29 100.0 32 ............................. CCTGCGGCTGCGGTCAGGTGCGACCCAGCGTG 115646 29 96.6 32 .................A........... GGCTGCTCGATTCCCCGTTTCGGCACGCCGCA 115585 29 96.6 31 ......................C...... CGGATTGCGGCTTTGTCGTCTCCTTCGAGCA 115525 28 79.3 0 ....CT.......GG.A...-........ | ========== ====== ====== ====== ============================= ================================ ================== 11 29 97.2 32 GTGCTCCCCGCGCACGCGGGGATGAGCCC # Left flank : CCCGAACACAACCGAGCCACATCCTTGCCCGCGCCGTGCGCCCGCACCAGATGCGCGGTGATCTGGTCCAGATCCAGATGCTGGGTGTCGATCAACTCGGTCTCCGGCGCACAGTGCGCCAGCACCGCCGGATCGAGATAGGTCCCCGCGTAGAGACAGACAGGACTCGTGCGCAGCAGATTCACCGCACGCACGGTCAGCAGGTCCGCCGCGCCCGGCCCGGCCCCGATGAAATGCACGGTCATGGGGGTGAGTGTAGGGATCTCCGGATGGGCGGTCCGGGCTGCGGTGGTCGTGGGTCGTCGACGGACCAGGCACGTGGGGCGTAGTCGGTCTCTCACGCGCCCCTTGGGGAAGATCGCCGGCAACTGAAATGGGATCTCGCAGGATCGGCGACGTACTATGACGGCGGCCTGCCCGTCTTGTCCTTCAGCGAGGTGCAGCGGTGGAAAGTGAATGAAAAACGGGGTTGGGGGCTGAGAACTCGCAGGTCAGGAAGT # Right flank : GAAGGCTCGACGCGTTGTCCCGCCAGCGGGGTGCCCCCCGCATGCAGGGAATGTAGCGGTTGACGCCGGTAACCCGGAGGCCGGTTTCCTCTTCGACGTCGTCGACTTTGCCGCTGGGCAGTTCCCAAATGCCGCCCATGAAGTCGTTGCCGGGTGGGCGCAGCAGCAGGATGCGGCCGTCGTGTTCCACGATCGCGCCGACGACGAGTTGCTGGACGCCGTCGCATTCGGCTCGGGCGGTGCGCTCTTCGAGGCGGGTCGGCATCAGGTTCATCCTTTTCGCCCGGAAGGAGCCGCCGACTGTTGGCGTGCGTGTCGGACTGCGTCGGTGTACAGCTCGGTGGTCAGTTCCTCTGGGGTGACGCCGAGTTCTGTGAGTATCGCGCGCAGTTCTGCGAAGGCTTGGGGGAGGTCGGGTTCTTCGGCGTGGGTTTCGAGCTCGAGGTAGGTGCCGTCGATTTCCGGGACCTGGGCGATGGTGGCGAGCATGCGCCTGCCGG # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCACGCGGGGATGAGCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCACGCGGGGATGAGCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [30.0-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 68457-70253 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADLQJ010000015.1 Nocardia farcinica strain BJ06-0138 NODE_15_length_151629_cov_41.323798, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 68457 28 100.0 33 ............................ CTTGTCGTACTCGCGGCCGCCGGTCCCGTCCTG 68518 28 100.0 33 ............................ CCGGGTCGAGGTGTTCTCGATGCGGTGCAGGCG 68579 28 100.0 33 ............................ GGCGCAGAAGCTCGAGGACAAGAAGGCCGGCGT 68640 28 100.0 33 ............................ CAGATCACGACCCTTCGGGGTCGCTGACGAACT 68701 28 100.0 33 ............................ CCGGTGTCCGACCACCACACCACCAACTGGTGG 68762 28 100.0 33 ............................ CCGCGACACCACCGTCGACTTCACCATGCAGCA 68823 28 100.0 33 ............................ CGTCGACGTCGACGGCACCACCACCCGTGTGAT 68884 28 100.0 33 ............................ CTACCTCACCGCGGTGGCAACCGACCCGATCAC 68945 28 100.0 33 ............................ CTGTGCGCGGTCGACCGCCAAAGCGGCCAGATT 69006 28 100.0 33 ............................ CGGCAAGTGGCGGAGATCACAGGAATCGCCCGG 69067 28 100.0 33 ............................ CCCGCCACGGCTGACCGCCGAGGAACTGAAGAG 69128 28 100.0 33 ............................ CGCTGTGTGGTCGCAGTCGGCGGTGAGCGGCGG 69189 28 100.0 33 ............................ CTGGGCCAAACACCTCGGCGTCCCGCTCCGGAA 69250 28 100.0 33 ............................ CGCGGCGCTGGCGCAGCAGGCGTCGCGGGTGGA 69311 28 100.0 33 ............................ CAGGTCGGTGTCGAACGCCTGCGTTTGCACACC 69372 28 100.0 33 ............................ CCCGCGCTCGTGCCGGTATCCTGACGCTGTGAG 69433 28 100.0 33 ............................ CCCGTGTCGGCTCACCCCGCACTTCGCGACCTC 69494 28 100.0 33 ............................ CGACAGCGTTTCCCGCCACGCCAGCAGCCGCTT 69555 28 100.0 33 ............................ TCGGGCGTGGCTCACCGACGCTGTGACCCCCGG 69616 28 100.0 33 ............................ CTTGGAGGCACCCGAGCGGCGGTCGACCTGCTC 69677 28 100.0 33 ............................ CCCGAGCGTGACACTGGTCGAATGCAACGCCGT 69738 28 100.0 33 ............................ CGGCAGCAAGATCGCCGACCACGCCTGCGCCGC 69799 28 100.0 33 ............................ CCGCTGAAGCAGCACTGGCCACCAGCACATCGG 69860 28 100.0 33 ............................ CACGGTGCGCGAGCAGCACGCCCAGGCAGCGAC 69921 28 100.0 33 ............................ CCGCTGAAGCAGCACTGGCCACCAGCACATCGG 69982 28 100.0 33 ............................ TGGGACTTCCAGCAAGAACTCAACTGTGACGCC 70043 28 100.0 33 ............................ GTACAGGAGGTGGTAGCGCTTATCACCAACGCG 70104 28 100.0 33 ............................ CGGGGTGTCGGTCAGCAAGATCGCCGAAGCCGC 70165 28 100.0 33 ............................ CCAGGCTTGGGAGAACAGCGCGCCGCCGAGCGG 70226 28 92.9 0 ..............C...........T. | ========== ====== ====== ====== ============================ ================================= ================== 30 28 99.8 33 GTGCTCCCCGCGCATGCGGGGATGAGCC # Left flank : CGCGGGTGACGATCGAGGTCGACGAGGCGGCGCTGGCAATGGTCGGCGCGCTGCTCGGCACCGCGGGCCGAACGGAGGAGACGGTGAACGCGGCGCTGCACGAGGTGCTCGCGCAGCGCAAGCGCATGGCCGTGCTCGAGCGGATGATGGTGCGGGCGGGGGAGCGGGTGGTGCCGGCCGATCCGTGGCGGAAAACGCCCGCTTGGCCGTAGCGGTCGACTGCAAGCGAGGTGCTGAGTGTGTCCCGGGGGGTGCATGCGGTACACGTCCAGGGTCGCGAGCGGAAACGAGGCTACGAGCTTCAACGGGCTCGTTGTGGGGCTGTTGGAGCTCGCGGGGCCTCCCTTCCGGTGTTGTAGGCGTAGGTTGTGGGAACCTGTGCGGAGGCTCACGCGAGACAACGGAGGTGTGATGTATCAGGAGGTGGATTGCGGCGCGTGAGTTGGGTGAAAGTGAATGAAAACTGGGGTAGTGGGCTGAGAACATGCAGGTCAGGAAGT # Right flank : CCGACGACAACAACCTATGGGTGCTGTGCGACAGGTGCTCCCGCACGGGGATAAGCCCGCGACTTGGTCGCGTGCGGGCTGGGCGAGGTCGTACCCCCGCGCACGCGGAGCCGCCTTCTTCGGTCGGGGCAGCAAGCAACCGCACCAACCGCCCGCTGGGCTCCGGTCGAATCCGCCGGTCCCACCGGCGTCCCGGTCCTCGACCCGCGGGTGCGCACACCTGGTGTCCGAAAACGGCTGGGGTGGCCTGGATCACCTCGCCGGGGTCGTTGTGCGGTCGGTGGGGGCTCGCCGTGAAAGTTCCCGGCGAAAGAGGTATCCTGCCGGAGGACGCATTCGCGTTCGGTCAGAATTGTGTTCGAACACGTCGTGTTCGGGCATATTGGATTCGAGCACACGCTGTGTTCGAGCAATGTGAAGGTTCCCCGGAACGAAACGCGGGGACGAACGGCGCGCGCGATCGGCAGGATCGCCGCCTAGGACGAGGAGGTGGGTCGCAT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCATGCGGGGATGAGCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCGTGCGGGGATGAGCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [51.7-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 18138-18836 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADLQJ010000037.1 Nocardia farcinica strain BJ06-0138 NODE_37_length_19222_cov_41.049175, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 18138 28 100.0 33 ............................ GTACCGCGAAGCCCTGGCCGATTGGGAAGTCCT 18199 28 100.0 33 ............................ CACCCGCTCCTGCTCCGGTCCGTCCGTGGAGTA 18260 28 100.0 33 ............................ CGGCGGCAACGGCGGCAACGGAATCGCCTACAT 18321 28 100.0 34 ............................ CCCCGCCAGGTCGTTTTCGTGCCAGCGGGTTTGG 18383 28 100.0 33 ............................ GAGCTGGCAGAAGAAGGCTGATCAGGAGGCGCG 18444 28 100.0 33 ............................ CCGGATCGCCAAGGGCGTGAAGGTGTGCGACGA 18505 28 100.0 33 ............................ CGGCAGGGCGAAGCGGGCGATGCCCGCCGACAG 18566 28 100.0 33 ............................ CTACGAGAGCAAGGGGATCGGCCTGGTCCTCAT 18627 28 100.0 33 ............................ TCCTGCCACGCAAGCGCGGCGCTACACCGTGCG 18688 28 100.0 33 ............................ GGTACGACGAAGGCCAGCCCGGCGAACGGGCTG 18749 27 96.4 33 ....-....................... CGGCGGATTCGGGGTGCGCTGATGCATCCGCTG 18809 28 92.9 0 ...........C........A....... | ========== ====== ====== ====== ============================ ================================== ================== 12 28 99.1 33 GTGCTCCCCGCGCATGCGGGGATGAGCC # Left flank : GCGTCGAGTTGCCGTGCCCGCCGGGGTCTGATTCTCACCACAGGCGGTGGGGCCGATGTTGTGGGGTCGGGTAGCTTCTGGATCAGGTTTTCCAGGGCTTCCGCCTGCGTTTCAGGGCTTCTACCTGCGCTTTTAGGGTTGTAGTAAGGTCCCCCAAGGTCCACTTTTTCTTTCTGAAAGCGCGTCCGAATGGGCGCGCTTTTTGTTTATTTTTCGTGGGCCTTCTTCACCCCGACGACGTGCCCGTCGTCACGGCGGACGGGATGCCGGAACACCGGCGCCGCCTGGCCCTGGGCTCATCTGAATGTCACCATGCATGTCGCTCGCTAAGGTGTGGGGCACCGTTTGGGCAGGGAGCGGAGGCCCTGGTTCACCAGCTTCGATGAAGCGGGCTGATCGCGATCGGCCGACGCGACGGTGCGTTTGTTGGGGAGGTGAGGAACCGACTGAAAGTGAATGAAAAAAGCGGACGTTGGCTGAGGAACTGCAGGTCAGGAAGT # Right flank : CGGTCGACGTGGCGTGGCCCACGGCTCCCGCAGAGGAGGTGTTCGGCTGCGTCGTCTGCGTGTGCGCCGCCCACTGACATGTGTGGGTTTCGGTAGTAACCGCCGAAAACCAACGGATATGGCGTAGAAGCTGGTCGGCGCCGGTTCGTGTCCGGGGCCGAGGAGCGCGGTGAGCTTTCAATCAAGCGTCCACGGTTCCTGGAGGGTTAGCCTTTCCTGCATGAGCACGCCCGACACCGCACTATCAGCCGCAGCGGCCGGGGCTGCTGCAGGGGTAGGTGACACCTGATGTGGCTTGCCTTCGGGTGGGCTGGAAGGATGTCGCTGTGCCCAAGCCTTATCCCCGCGAGTTCCGTGACGATGTCGTCCGGGTGGCTCGCAACCGT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCATGCGGGGATGAGCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCGTGCGGGGATGAGCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [51.7-26.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1711-155 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADLQJ010000049.1 Nocardia farcinica strain BJ06-0138 NODE_49_length_3285_cov_30.270108, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1710 29 100.0 32 ............................. CACCCGACGACCGACCACCTGTGCGCTGACCT 1649 29 100.0 32 ............................. CGGTTCCTCGAAGTCGACTACGCGCCCCGGGA 1588 29 100.0 32 ............................. GGGAACGTTCGTCTCGGGTCGTAGCTCCCACT 1527 29 100.0 32 ............................. TCGCCGCGCTCGAGCAGGCCGGTCATGACGTA 1466 29 100.0 32 ............................. ATCTCCGATGACGGCAACCAGCTTGAGGTGGT 1405 29 100.0 32 ............................. CTTGCCCTGATACGTCCGTAACCCCGCGTACG 1344 29 100.0 32 ............................. TTGTTCATCGCAATCACGGGATCGCCAGCCTT 1283 29 100.0 32 ............................. TTGGAGACCGCCATCGAGAACGCTTGCAACGC 1222 29 100.0 32 ............................. TCGGGATCGATGCAGGGATTGGTCACGGTGTG 1161 29 100.0 32 ............................. GTGAGAGAGGCCCTGACCGGGTTGTTCCTGGT 1100 29 100.0 32 ............................. CGACCTGAATCGACAACCCGGCATGATCAAGC 1039 29 100.0 32 ............................. ACCCCGAGGAGCGCTGATGCCCGACATCGCCA 978 29 100.0 32 ............................. TCCGGACATCACATGCTCCAGTTCTTGTAGGC 917 29 100.0 32 ............................. TGTGGGATGGAATGGAGTAAGAATCAGATGAA 856 29 100.0 32 ............................. TCACCGCGGTGAACAGCAAGCTCGCCGCGGTG 795 29 100.0 32 ............................. ATTTCGCCCCACACGGTGCCCTCACCTCTCAC 734 29 100.0 33 ............................. TTGACGGGGCAGACCACGCGGGCCACGACCGGG 672 29 100.0 32 ............................. GGCACCGAGGGCTGGTCCCCGCGCCAGTACAC 611 29 100.0 32 ............................. CGGCTCACGATCGGCATCGAGGCCGAGAACAA 550 29 100.0 33 ............................. TCGCCGCGCTCGTCACACCAGCGGCAGCCGTTG 488 29 100.0 32 ............................. GTCACGTCCCCGGAGAGGCTGAGCGGCAGGAG 427 29 100.0 32 ............................. GAGCCGCTGCTGACCGAGGAGCACCTGGCCGG 366 29 100.0 32 ............................. TCTTCGACCTCCCGATCAAAAGCCCTCCACCA 305 29 96.6 32 ................C............ TGATCCGGGCGATCCTCGACGCCCTCACCGGC 244 29 96.6 32 ................C............ TGAGCCGCGATACCTATCGAGCTACGTAGCCA 183 29 93.1 0 ................C...A........ | ========== ====== ====== ====== ============================= ================================= ================== 26 29 99.5 32 GTGCTCCCCGCGCACGTGGGGATGAGCCC # Left flank : GTGGAGAAGCCGCCACAAGGCCACTTCTTCGCCTGTTCTACCGGTGCGGTATCGACATCATCCGCGAACCAGTCGTCCTGCTGAAGTCGAACTTATTGAAGCCGCCCTCGACGCCTTGGCCAGCGTCGGGCTCGGCGACATGAGCGGCATCGAAAGGCGTGCCATCGAGCGCGTCTTCTGATGGAGTGGGAGGGGATTCGAAGCCTTGGCACGCTACCGGCAGGGCTGTCCGGTCGCCGGGCTGCGTCCAGAGTCCGGGCAAGAAGCGGCGCAGTTCGGCTCCATGTCTTCCATTCCTTTCTGGTCCGGTTGGGCCGCCACCGTGTGCTCGGCCACATTAGGGTAGTGGCGACGTTCGGGAGGGGGCCTTGCGCGTCGAGTCAATGGCACCGTGTGTCTGGCTGTCGACCGGTGCGATGGTGAATGTCAGGGAGGTGAGGAGCTGGCTGAAAGTGAATGAAAACTGTGGACTCGTGCTGAGGAACTGCAGGTCAGGAAGT # Right flank : CGAGAGTTACTGATCGGGATGACTTGAGTGAGGTGCCGGAACTTCCTCGGACAGTGACCCAAAGTATGATTTGGGTAACTGAACGGAGTTGTTTGTGGCACAGAAAAAGTCGCGTCAGTTCAGCCCCGAGTTCCGGGAAACAGCGGCACGTGAGG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCACGTGGGGATGAGCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCACGCGGGGATGAGCCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-6.40,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 132-282 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADLQJ010000026.1 Nocardia farcinica strain BJ06-0138 NODE_26_length_71467_cov_40.433333, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 132 29 100.0 32 ............................. CGGCCACGGCGTCGCGTGTGGACCGGCGGCTC 193 29 89.7 32 C...................A..T..... GAGAAGCTGATCGTCGCCGACCTCTTCACGCT 254 29 75.9 0 ..............T..T.C.TC.C.G.. | ========== ====== ====== ====== ============================= ================================ ================== 3 29 88.5 32 GTGCTCCCCGCGCACGCGGGGATGAGCCC # Left flank : CTTCGGATTCACTCTGCAATTGACTACCGCACTCCGAACGAAGTAGAGTCGGAATGGTTCGATCGGAATCAGGCAGCTTGAGATGACCAAAATTTCGCTGTCCGAAAAGTTTCCGGCCCCTCAGAGGGTGGG # Right flank : CGAGCGGGCGATGCAGTTGCCGATGGTCTCGAACAGCATCGGTAATCCGCGCGACCGGCCGCGACCCGGAGCCCGGTCATCAGGTGGGGGTCTTGCCGGTGCCGCGTGGGTCGCGAGAGTTCAAGTCCTTGGCGTGGGACGAAGGCACTTGGTCAACATGGGTCTATGGGCTTCCGTGGCGGTTCGGAGAGGCCGCCGGAGGCCGCGGAGTGACATGCCGTGCGGCGCCACGGATCAGGTTGAGCCGCAAGGGCAAGTCCGCACTACCGAGATCGGCCCCTTTCCGCCGCGTCAGTGGATAGCATTGTCCACGTTGCCGATGAGTCCGAGCGAACCTGAGATATCAATGGATTTCGACGAGATCGACTTCCTGCGTCGCAGCGATCCCGCATGGCGGCTGTTGCGGGCTGACCACGCGCCCCTGGTCCTCAGTTTCTTGCGGAAGGTCTTCGTCGTGGACAACGTCCGGGCGATTTCGGCCACCGAGCTGGCCGGCCGTC # Questionable array : NO Score: 3.59 # Score Detail : 1:0, 2:3, 3:0, 4:0.42, 5:-1.5, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCACGCGGGGATGAGCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCACGCGGGGATGAGCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.70,-9.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [45.0-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 11242-11773 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADLQJ010000026.1 Nocardia farcinica strain BJ06-0138 NODE_26_length_71467_cov_40.433333, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ============================================== ================== 11242 29 96.6 32 .......T..................... AGGTGTCAACCGGGGCACCACACACCACAAGG 11303 29 100.0 32 ............................. CGGCCCAATCGGGGCACCCAAGCTGATGTACC 11364 29 100.0 32 ............................. GGGCGCGAGACGGTGGCGGCGGTGCGGTGGCG 11425 29 93.1 32 ............C...............T CTAGCGCGCGCGTTTCGGGTGTCTGCGCCCTC 11486 29 96.6 32 ............C................ GGCGCGAACGCCGCGCTCGGCGCGACTCTCAT 11547 29 93.1 32 ............CG............... GTCATCCCGCCGCCCGTGGTGTTGACCGCGTA 11608 29 93.1 32 ............CC............... CCTGCCCGAATCCCCATCCGATCTGCTCAGCG 11669 29 89.7 46 ..........T.C............A... AAGATCTGCATGTAGGAGGACCGTCGTTCGGTGCATCGAAGTCGAC C,T [11674,11697] 11746 28 72.4 0 A.......G..AC.T..-C...C...... | ========== ====== ====== ====== ============================= ============================================== ================== 9 29 92.7 34 GTGCTCCCCGCGGACGCGGGGATGAGCCC # Left flank : GAGAGCTGATGACCCCTCGGTCGCACCTGGCGTGGCGTTCCTTCGTCGCCATGAGCCTCGGTGGATTCATCGCCCGACCGGATGGTGACGTGCGGTGGCTCGAAAGTCTGCCGACGGACAGAGGCCACGTCACGACGAGCGCAGCGAACCCCGCCCTGGTATGGGAGACGTTCTTCCCCGACATCGACGCGCTGGTGATGGGGCGAAGCACGTACGAGAAGGTGCTGACGTTCGGCGACTGGCCCTTCCCCGGTCTGACAACGCTGGTGCTCAGCAATGCGCTCGACACCGACGACGACAACATCGAGCCGGGGCTGTCTCCGTGTGCTCGGCCTTATTAGGGTAGTGGTGACGTTTGGGAGGGACCTGGCCCGTCGAGTCGATGGCACCCGCGTGGCTGGCTGTTGACCGGGTGCGATGGTGAATGTCGGGGAGGTGAGGAGCTGGTTGAAAGTGAATGAAATTGTGGACTCGGGCTGAGGGACTGCAGGTCAGGAAGT # Right flank : CGGTCCGCCGATACCGTCATCGACCGATCCGGGTGCTCCCCCGCACGGGAGCAACCCCTCGGCTGACAACACGCACCGCGCCGCGTGTTGCCCGCGCCTGCGGGCGGTAGGACACACGACGACCGAGCGGCCGAGCGTTCCAAATTTTCTGGTTTAACTCCTGCAAAATCGGGTATCGCTTGCTATCCTCGCTCATGTCCCGCCGCCCAGTTCGCTCGCTCAATCAAGGTTGTCGGTGGGGTTCGTTACCGTGATCCGTGACAGGGGTGGAACGATTCGAGGGGGAATTCGGTGCTCGGTACCGCGACCTTGTCTGCGTGGGCGAAGAGTGATCGCGAGGGTGGAAGCCTCTCTCTCGTAAGACATCTCGCTGATTCCGGTGAGGTCGCGAAGTTGGTCTGGGACCGTTGGCTGCCGGCCCATACACGGCAGCGGATCTCGGTCGGCCTCCCTGGCGGCGAAGCGGATGGACGGACGCTGCTCGTCTGGCTGGCGGCTAC # Questionable array : NO Score: 5.31 # Score Detail : 1:0, 2:3, 3:0, 4:0.64, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.41, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGGACGCGGGGATGAGCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCACGCGGGGATGAGCCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-17] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-28.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 20958-23164 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADLQJ010000026.1 Nocardia farcinica strain BJ06-0138 NODE_26_length_71467_cov_40.433333, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ====================================================================================================================================================================================================== ================== 20958 28 100.0 33 ............................ CTGTTGGGCGCCTCGCCGGTTCCGCTGCTGGGA 21019 28 100.0 33 ............................ CGAGACGCCCGGTCTGATTTGACCCATTCCACT 21080 28 100.0 33 ............................ CGCGAGCATCGTCGACGAGGAGCGGCTACGCGG 21141 28 100.0 33 ............................ CTTCCGGGAAGGGTGCAGCTTCGCCAGGATCCA 21202 28 100.0 33 ............................ CGCGGTGGCCGAGATGGTCCGGGAGCTTCGAGC 21263 28 100.0 33 ............................ CTGGAACGGGCTCGGCGGCGGCCTGGTCGGCAT 21324 28 100.0 33 ............................ CTCCCCTCGATGCGCCGCTTGGCAGACGAGTAC 21385 28 100.0 33 ............................ CGACATCAGCATCGGCATCATGCGGGGCGGCGG 21446 28 100.0 33 ............................ CACCTCGACCAAGCTCGAGGTGCTCAAGCGGCA 21507 28 100.0 33 ............................ CCGTGGGGCCTCATGCACCTCGACCGGCCGGAA 21568 28 100.0 33 ............................ CTGCACCGCCGAGACGTCGCCGAGCGCAAACAC 21629 28 100.0 33 ............................ CAAGCTGGTGTCGATCTCGGCGTCGACGATGAC 21690 28 100.0 33 ............................ CACCTACCCGCAGTCGGCGGAGCTGATCCACTG 21751 28 100.0 33 ............................ TGGCTCGCGTCGACGTACGGCCAGGCCACCGCA 21812 28 100.0 33 ............................ CCCGAGACCGCAGGCGCAGGTGGTCGACCGGGA 21873 28 100.0 33 ............................ CGTGAGCGTCTGGTCGGCCACGTTGTCGGCCGG 21934 28 100.0 33 ............................ CGTCAAGATCTGGGAATACGCCCGGGTCTTCGT 21995 28 100.0 33 ............................ CGGCCGCACCTTCGACCCCCAGCCGGACGCTTT 22056 28 100.0 33 ............................ CGAGATGGCCGAGGATCGCTCCACCGAAACCGA 22117 28 100.0 33 ............................ CCACACCATCAGATCCGCGAGCGCGGTGGCCGT 22178 28 100.0 33 ............................ CCGGGGTGCGGAACTTCATCCGCGACGACCAGG 22239 28 100.0 33 ............................ CGGTCAGGCTCACCGCGCCGACACCGACGGCGA 22300 28 100.0 34 ............................ CGATGTCGACGCCGTGCTCGCCGCGATCGGTCAG 22362 28 100.0 33 ............................ CGCCCACGACTACCAGCGCACCTCGGTCGACGG 22423 28 100.0 33 ............................ CGAGGCCCTCGAGGCAGCCATCAACATGGCGGG 22484 28 100.0 33 ............................ CGGCGTGACCGTCGCCAGCGTCACCGGCGCGTC 22545 28 100.0 32 ............................ CTGGACGGCGGCCGGGTGTCGAGCAGTGCGGG 22605 28 100.0 33 ............................ CGGCGCCACCCCGCCGATGCCATCCCCGACAAA 22666 28 100.0 34 ............................ CCGTCAGGAGACCGCAGCATGACCGACCTGACCC 22728 28 100.0 33 ............................ CCCGGCAGGGTGACGCCGCTCCAGGTGCTCGAC 22789 27 96.4 33 ....................-....... CCGCCGCCGGTGCCCTACGCCGAGCTGAAGGTG 22849 28 100.0 33 ............................ CGACCGGGCGCAGGGGCGGATTGGTGGGTGTCG 22910 28 100.0 198 ............................ AAAGCTCTGTTCACCACCGACTGGCCGGACTGGCGATGCGGACAGGCGTCAGGACCAACTCGCCCGTGATCCATGATCTCTTGAAGGGCCGCCCGGCGAGACCATCAGGCGCTCAATGGTTGTGAGCGCAGAATCGGTGGATGGAGAAGGGCGGCTGGACCGCGGCGGTACAGCGCCGCCGGCCGCCCGCCATTGCGG 23136 28 71.4 0 ...G..TG.....CG.TC..A....... | G [23163] ========== ====== ====== ====== ============================ ====================================================================================================================================================================================================== ================== 34 28 99.1 38 GTGCTCCCCGCGCGTGCGGGGATGAGCC # Left flank : AGTGGGACACCGACATCGTCGAGCTGTGGGACCGCAAGGGAAACGTCGCGGGCGGAACCTCCTACAGCGACGAGGATGTCCCGTGGTAGTTCTCGTACTCAGCGCATGCCCCGCCGGCCTCCGCGGCCACCTCACCCGGTGGTTCCTCGAAATCAGCCCGGGCGTATTCGTCGGGATCGTCAGCGCGCGCGTGCGCGAACTCGCATGGCAGCGAGTCGTCGAACTCGCCAAGGACGGCCGCGCCATCATGATCCACTCCACGAAAGGAGAACAGCGCCTCGCGTTCACAGTCCACCGACACGACTGGGAGCCGGTCGACTTCGACGGCCTCCACTTGATGCGCCGGCCGCACACCAGCGCCGTCAGTTCAGGAGGCGCACGGGCCGGCTGGAGCAAGGCCAGCCGGTACCACCGAGCCGCCCGGAAACGCGCGGCCGGTGGGGGTGCGGAAAGTGAATGAAAAATGGGTGATCGGTTTGGAAACGTGCAGGTCAGGAAGT # Right flank : CCCCGTCGGTGCCCGTGATCTTACGATGAAAGTTACGTTGATCCAACGGCTTTCCCCAGACGATCTCGTACACACGGCGTAGTTCCGCTACCGTGAACTCCGGCCTGCAGAAGCGGGTTGCGAGAGTGGTGTACTCGAGCTTGCTCCGAGCGCGTTCGACCGCGTCGGCGACGATTCGCCCGTGATCGAAGGCCAGTTCGGTCCGCTCGTTCAACACCCGCTCCACGGGCATCCAGGTGGCCGAATGCGCGTCCCCGCCTGCTTCGGGCGCGGGGAGGTCTGGCACCAGTGCCAGGTAGCACACCGTTACGACGCGCCGTCGCGGATCGCGGTTCGGTGAGCCGTAGGTCTTCAGCTGTTCCAAATGCGCGCGATCGAGGTCTAATCCGGTCTCCTCGGCCAGTTCTCGTTCTGCGGCGGCGTCCAGGTCCTCGCGGTCGTTGTCGAGGAAGCCTCCCGGTAGGGCGAGGAAGCCCTGCCATGGTGGGATCCCCCGTTCC # Questionable array : NO Score: 5.74 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:-0.46, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCGTGCGGGGATGAGCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCGTGCGGGGATGAGCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-16] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //