Array 1 160021-159456 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGXBR010000001.1 Lactiplantibacillus pentosus strain 7.8.46 assembly_contig_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 160020 36 100.0 31 .................................... TCAGCAAGCTCACCAGTCTTGTTGTCAGCGA 159953 36 100.0 30 .................................... CGCCGCCCGTGTAATCCTTGAATCGTGGGC 159887 36 100.0 30 .................................... TCCGCAACTCGTTCGATGGCCGTTGATCAA 159821 36 100.0 30 .................................... CCAGAACACGATACCCAATCACAATTGAGA 159755 36 100.0 30 .................................... TGAGTATCCTTTATAAACATCAATCGTAAT 159689 36 100.0 30 .................................... TACAGCCTACGAGTTGGAGCGCGACAAGTA 159623 36 100.0 30 .................................... AAATATATGGAAGGTATCTCGCGATATATG 159557 36 100.0 30 .................................... ACCCAGTATTCAGAATGCCAATCATACGTG 159491 36 94.4 0 ...............T...................T | ========== ====== ====== ====== ==================================== =============================== ================== 9 36 99.4 30 GTCTTGAATAGTAGTCATATCAAACAGGTTTAGAAC # Left flank : CAGTCGATTTAAACCGCTTGTTTATGAAGAAGATACAGACCCAGATTATCAAGTTAATGGCTGATGAACAACAAGTGGCCGTCTTGGATCAAAGCCGGGCCATGATTGCCAAAGTAATGGAAGCAAGTTTCCTATTGGATCTGCCATTAGATGTAGAGGAAGCACCAGGATTAGATCAAGCTTTGAAGTTTGCTGGAATTCACTTTCCCACGGATTTAACGCATAATCCTAGTGCAGTTTTAGAGGCGCTTGTTCAAACTCATGTTGAGCTAGGACTCAAGCAATGCCCTGTAATGACCAATGTCAGCCACTATTTGAACCCGGAACAATGGGCCGCTTTTGAACAGCAAGTGGCAGATTTAGGCACTACGGTTATTGTCATTGAATACTCAGAAACGAATCGGATGGAAAAGTTCAAGGATTGCTGTTATTATTATGTTGACGAGGATTTAGTAGACTGGCGTGATATGAATTAATTAGTAGATTATGTGAGAATGCCG # Right flank : AAAGAGATAGAGGCAGCCAGAGGGCCTGGGGTCTTGAATAGAGACCCATTAGGTAGGGCTCAACGCACCAAAAAACCGCCCGACCCACCAGGTCGAGCGGTTTTTATTCGGTAACTAAACTAATCAAGCACGCGGTCTTTACCCATTCGCCGGAAACGGATGAACTTCCCGATTTCGGTCACAATCAGAACGACGATCCCGCAGACAATTGGGATGCCCCAACCATACCAGAAGTTGATGCTGGTCGTATGGAAGACGGATTGCATGAATGGCAAGTAAATGATGCCAAGCTGGAGGAGAATCAGAATACCGATAATGTAGAACGCCATCTTGTTTTGGAAGAAATACTTGGAAATGACGGGGTGGTCGTTTCGCAAGTTGAAGAGGTAGAAAATCTTACCAAAGATGATGATGTTCAGTGACATCGTACTACCGACCACGTTCGGTAAACCAAGTGCGGTCAAGTAGTCGTAGGCGAAGATTCCGAGTCCTGAAATCAG # Questionable array : NO Score: 3.23 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTGAATAGTAGTCATATCAAACAGGTTTAGAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.20,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [46.7-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.68 Confidence: HIGH] # Array family : NA // Array 1 28298-28807 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGXBR010000003.1 Lactiplantibacillus pentosus strain 7.8.46 assembly_contig_3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =================================== ================== 28298 29 100.0 32 ............................. TTATGGACACTGTGCTATCGCTGCCACAACAT 28359 29 100.0 32 ............................. GATGTGCCCATCTACTACTTGATAAGTTCTCG 28420 29 100.0 32 ............................. GTTCATTTTGCTCGATATTTTTCGTTGGTTTT 28481 28 86.2 35 .....A.........A..A......-... TTAACGAAACCGTATTCTGCTGATTTGTCCTGGCA 28544 29 86.2 33 ..G........A...A............T TAACACGCCGGTAGTCCCGTTTTTGAGGGATTG 28606 29 86.2 32 ..G............AT....C....... ATGACTGCGCACTATACTGAGTCAGTGCGACT 28667 29 75.9 32 ..T.....T......A...AA.....T.G AGGGGCACTCTCGTGAGAAGTGTAGACGCTAG 28728 29 79.3 22 ..G...TT...........A...C....T CGCTGAATCGATATCCGCCATT Deletion [28779] 28779 28 75.9 0 T..........A...A......A.-..TT | C [28800] ========== ====== ====== ====== ============================= =================================== ================== 9 29 87.7 31 CTATTCCCCGTGTATGCGGGGGTGATCCC # Left flank : ATATTAGACTGCCGGGGTATTTATAATTCATTGCGCACTAATTTTCGCCACAACGCTAGTAACTGGAACACCAGCGATAAACGCTTGTACGGCGTGAAATATATGGCTAGTCTGATAAGCTGGTATATATCCATCTTTAAAATCAGAGTAATACCGAATGCTCCCCAAAAAAATATTCGTTAGTTATTCATTACTACAAACGCTCAATCAGTAAGACCGATTAATTTGCGAGTAGCAAGCTATTGGATTGATTTGTTAAAATTCCGGATACAGGTCAAACATTCACGCCTATTAAACGTGGTTGTAATCATGTATATCTTATATTAACATTTAGAAATCAGAAAATCATCTACAGTTTTGTTGCGTTTTATTGCAGACATTCATCTTGCTTGAAATCCCAGTTTCTTGTATAGTCCTAGTTGTAGATGTCAATTCAGCAAGTTGATGTAAATTTCGGATTTACTGATTTCATATTGTTGATATGACGGGATTTGTTTAGT # Right flank : TGTACCGATTCATGACATAATCAGCATTACTATCGCCTCTAATATATACTGGGATATTTCAGCATTTATACAGAGCGATGAACAACATCACTTCATCAACAGAGCAATTTGACTTCTATGAGAACCAACGGCAAAAAATTTAAGTTCACACCACCAATCTTCCTTGTGAATCAAGCTTCCATTACACAAACAGTGCATTTCTCAGATGTGTTCTAAATTTTTAGTCTTTCTAACTTATTCAATGCCTGAGCTAATGCCAACGTCGCCCGAGCATCTTCTAGCGCATGATGTGGTTTTAAATTCTCAATTTCGTATGCTGACAGTACTGTCGCGAGTCGATAGTTATCTAGAAACGCATTGGTACGCTTCACAATTGGCATCAAATCAATAGTTTGACTTCTTAACGCTTCCAAATTATTGCTGATAAACGCTTGCTTTAAGAAGGCCTCATCAAAATGAAAATTATATCCCACGATTGCGCAATCACCTATGAAAGTATT # Questionable array : NO Score: 5.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.39, 5:0, 6:0.25, 7:-0.08, 8:1, 9:0.59, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTATTCCCCGTGTATGCGGGGGTGATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCATGTATGTGGGGGTGATCCT with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-10.90,-8.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-22] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 31425-31819 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGXBR010000003.1 Lactiplantibacillus pentosus strain 7.8.46 assembly_contig_3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 31425 29 100.0 32 ............................. AATTTACGCTATCTAAGTTTATCAAACAAAAT 31486 29 96.6 32 ............................C GTGAGAACAGTTCACCACTCCATGAATCCCAC 31547 29 100.0 32 ............................. GTGGCAAACAACTGGACGCTAGCCTTGGGTGT 31608 29 96.6 32 .........................A... CGTTTCATCAAATTTGTCTCTGGGAGGGTTTA 31669 29 79.3 32 ..A.......T.C..A.........A..C CATATTGATTCAAGTAAGGTACGTCAAGCTAC 31730 29 79.3 32 ..A.......T..C.A.........A..C GAGCTACTGAGGAACTGGAGGAGAAACTAGAT 31791 29 75.9 0 T........A.A...A....A.....TT. | ========== ====== ====== ====== ============================= ================================ ================== 7 29 89.7 32 CTGTTCCCCGCGTATGCGGGGGTGATCCT # Left flank : AGTTATTTGTGCGTGGCTGATTGAAAGTAGCTTTTTGCCTGCAAATTTAATGCGTATCTAGACCTCACGATTGTTAAGCGCTTACAATTTATTGTTAATATTGCTGACAATCGTGAATTATACTGACAAGAAATCATCGACTTTCATCCGTACATTTTCGTCAGAACCCTAAACTGCTTGTAAGCGCTCCCGACTTTTAAATATAATTCCCCTACATTATCATACTGGCTATTCATCAACAATTCGCTTTATGTTATCCCACTTACTGGTTGAATTATTTCTAATTCTATACTTCTAATATTAGCATTCAATGTTTGAATAAACATCTATTTTTGGAAGGACTTCGATGGATTTTTGATAAATTATGACGACTAGTTTGTATCAAGACAGTCTGATATGTCCAGTTTTGAGGTTTCCCAATAGTTGCTTTCAACGATCAAGTTAATGTAAAATGAGACTTAGCCAATTTTGAATTGTTGATATACCGGGATTTGTTTAGT # Right flank : TTATACAGTTTTTAGGAGGGCAAAGATAATGGTTGAAATTATCGCGCATGTTTTAATACCAACCAATCGAGGATTTTTGATTTTACAGCGTACCCGAAAAGAATACGGCAATAAAAATGTATATCCCGGATACTGGGATATTCCTGGTGGTTTAGCCATAAATAATGAGATTCCAAGAGAAACAGCAATTCGGGAATGTATGGAAGAAACTGGGTTAAAGGTGAAAATTAGCAGAATTATTTGTGAAGACTCAGTTCTTGATACAGCAAAAATGCGCGTGTTTACAACATTAGTTTATCTGGCACATGAGATATCAGCTGATCAGAAAATTTATCTAAATCGAGAAGAACATTCTGAATTTATTTTTGTAAATTCACGGCAAACTTTGAATAAAGTAAAGGTCGTACCGTATTTAGAGAAAGTACTGTTGCAGTTTCTATAGATTAGGGAGAGTTGTACGGTGATAACTACACTTGAATGCGCATAGAAAGAATTTATAA # Questionable array : NO Score: 5.31 # Score Detail : 1:0, 2:3, 3:0, 4:0.49, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.56, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTCCCCGCGTATGCGGGGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGTATGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-9.00,-9.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-13] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.74 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 4385-3506 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGXBR010000015.1 Lactiplantibacillus pentosus strain 7.8.46 assembly_contig_15, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 4384 28 100.0 33 ............................ CCATGGCTAGGCCCCCTCATAGAATTTCGTGTT 4323 28 100.0 33 ............................ TAAGATGATCGAGTATTACCAAACCAGTCACAT 4262 28 100.0 33 ............................ TTAATCCCGCCGCGTCTTCGACCTTCATGTCGG 4201 28 100.0 33 ............................ CGTTTGCCAGGCTTTACTGGAGTCGTTCAATTC 4140 28 100.0 33 ............................ TACGCCGAAAGACGCGAACAACCACGCGATAGA 4079 28 100.0 33 ............................ CACGTTTAAACTTGAGCGCGTCGCGATTCTTGA 4018 28 100.0 33 ............................ CTGTATGGGGTCAGGTAGTACGGGTGTCAGCTG 3957 28 100.0 33 ............................ CTAATTCACGATTCTGGTCGCTGTGGTCAAGTA 3896 28 96.4 33 ..........C................. CTAATTCACGATTCTGGTCGCTGTGGTCAAGTA 3835 28 96.4 33 ..........C................. TAGATAGCTTGCATGAGTGTGCCGTAGTCCGTG 3774 28 96.4 33 ..........C................. TTATACCATACACCGAAAATGTGAAATAATAAT 3713 28 92.9 33 ..........C............A.... TAATCCAGCTCCAATTGGTTGGACGTTAAATGC 3652 27 92.9 33 .....T...............-...... CGTGCCGGACTGCTCAACGGTCATAATGCTACG 3592 28 92.9 32 ...........A...........A.... AATTAAACTATTTTTTGATGATACTTGCAGTG 3532 27 75.0 0 A...-....A.....A.A...T...C.. | ========== ====== ====== ====== ============================ ================================= ================== 15 28 96.2 33 CTGTTCCCCGTGTATGCGGGGGTGATCC # Left flank : ATCGCCTGCTACAACAAGTCGGCGCACAAGTTGTGGCCCAGACGGCGATTCTGGCAGAAGGTGCAGCTGGCACACGAACAGACATTGGATTTTTGGCGAAATTGCCACTGTTTGATGGAAACAACTCAGAATAATATCACTAGTAGTAGTGAACCGCGCCGCATAAACAGATTTAACGGTAATTTTATAGCCATTTTTGGCTTTATCGGTATTGTATGACCATTTAGACCGGTCAATTATAAATTCGTTTATACGGCAATTTTGGGCCGAATTCGAGCGATTCGCGAAATCTTGAGAAGCAATCTTTTTTCAATGGCAATGCTAATTCAACTAAAATGATAATCACGCCATACTTTCATGGAAGATATTTTAGACAATCGACCGTCATCTACTAATGAATCTACTTGCAATGACCTGTCAGTCTGGTATGCTAAACCCAAGTTGATGTAAAACCTCAATTTTGCGATTTTGGATTGTTGATTTGACGGGATTTGTTTAGT # Right flank : TCTACCTGCCTATCGTACTCACAAAAGTAAAACGTAGCGTTTTTGGAATCAAATCGACCAGAAGTTGACAATGAATTGGTTGTCCACGAAAAAATTAGAGTTCTTTCAAACTCATTGTTACCCTGAAACAACAGGTCATTAAAAATAATAACCACTGCTGGAGATTAGCCTATAAAATGGTTATTGCTTTGGATTATGTAATCAAGTGTTATGAATTTGAATCCGAGCTACATTTGCCAGGGAACTTTATAAAAGATAAAAATGCAATCAGGTATTTCAGAGCGCAGATTTCAAATTAGAATACCTATAAGGAATACCAAATTCATATCGGTAGTACACTATTCTTCACTAAGCTTCCTGGGAAAGCCTTGGTCATGTAGTTTACGACCATATTCGGGTGCCACTAAAAGCTAATAATTTTGGAGGAGAGTACTGAAAAATGAAAAAAGTTACAGTTTTTCTCGTCATAATCTTTGCGATTGCAATATCCATACAATACT # Questionable array : NO Score: 5.99 # Score Detail : 1:0, 2:3, 3:0, 4:0.81, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTCCCCGTGTATGCGGGGGTGATCC # Alternate repeat : CTGTTCCCCGCGTATGCGGGGGTGATCC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGTAGGCGGGGGTGATCC with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.70,-10.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [13-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //