Array 1 35445-35294 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADGFY010000041.1 Streptomyces solaniscabiei strain FS66 NODE_41_length_57956_cov_179.387420, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 35444 29 100.0 32 ............................. GGACCTTAGCGATCACCAGTTACGGCGTCACC 35383 29 100.0 32 ............................. GTCGACCGCAACATCCGCCAGTCGATCCCGAT 35322 29 96.6 0 .............T............... | ========== ====== ====== ====== ============================= ================================ ================== 3 29 98.9 32 CTGCTCCCCGCACCCGCGGGGATGGTCCC # Left flank : CGGCGTCAACCAAGCCGGCCCCGACGACTACGGGGACGGGGTCTGGTGACCGTCATCGTCCTCACCAACTGCCCGGCCGGACTACGCGGCTTCCTCACACGCTGGCTGCTGGAAATCTCCGCCGGCGTGTTCGTGGGCAACCCCTCTGCCCGGATCCGCGACGTGCTCTGGGACGAGGTCCAGCAGTGCGCGGGCCAGGGCCGCGCACTGCTGGCCCACACCACCAACAACGAGCAGGGCTTCACCTTCCGCACCCACGACCACGCCTGGCACCCGACCGACCACGAAGGCATCACCCTGATCCGCCGCCCCGACCCGAACACACCCACCCCCGGCCCAGCACCCAGGAACGGGCCACCACCTGGCTGGAGCAAGGCTGCCAAACGCCGCCGCTTCGGGAGAGGCTGATGGATCAAAGTTCACCTATGTCCCATTTGTCGAAATCAAAGGCAGTGCTCGAAAACCGCCTCAGGCGTTAGCAAACCTGCAGGTCATCCAGT # Right flank : CAGCGCCGGGGGCGGCGGTGAAGCCGAAGCGAGCGCGGGTATCGATGACAAGTCCGGCGGTGGTGGCGGCCTGCTTGCGGGCCTGGGCGCGGATGCGGGGCTGCCAACGCCGGCGTACGGCGTCCTCGAGGCGCTGGGCGAGGTCGGCGCGGGGCCGGCGGATTTGGTCCTTCACGTAGCGCTCGACGGTGCGCTGCGAGACGCCGAGCAGGTCGGCCACGGCGCGGGTGCCCTTGAGCTGCTGGACGAGGTAACGCATCTGCGCGCCGGGCGACTTGGGGATGGGGCGGGTGAAGGCCTGTTGCACGGCGCGGTCGAGGCCGTCTCCGATGATGCCCATGCGGGCTCTCCATTCATGATCGGCTGTGCGGGCCGAACCAGTCCACGGCTTCGCGCAGGAACGCGGCCGCGTCCGGCCAAGCCAGCGGGACGAGACCAGCCGGCACATCACCTGGCGCAGCGTGACACCGTCCGACCGGCGGCCGGCGAGCCGTGCGCGG # Questionable array : NO Score: 5.31 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCACCCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCACCCGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [26.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 45156-45884 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADGFY010000041.1 Streptomyces solaniscabiei strain FS66 NODE_41_length_57956_cov_179.387420, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================================================================================================================================================================== ================== 45156 29 100.0 32 ............................. GCCACTTGGCGATCGCGCGGTTTCCGGTCTCA 45217 29 100.0 32 ............................. CGGACCCGAATCCAGGTGCCGGCCGAGTACAG 45278 29 100.0 32 ............................. GGCAGCCCAGGGGCGGCGTGTTCGGACCACCC 45339 29 100.0 32 ............................. CATCGTCTCGGAGGGGTACCCCACGATGGCGC 45400 29 100.0 32 ............................. GTCAGACCCACCCCGGCCGCGGCGGAGTCGGC 45461 29 96.6 32 ............................T CTTCACCGGCACCCGGAGCTGATCCCGCAGGT 45522 29 100.0 32 ............................. CGGCGGCACGAACACGTCACCAACGCGGCGTT 45583 29 100.0 32 ............................. GCCGTGAAGGCGAGCCCCTCCATCTCGGTTGT C [45600] 45645 29 93.1 182 .......................A....T GCCAACTACGGTGGTGCCTTGAGGACGCCGTCCGCGCCCGCTGGCAGCCCCACACCCGTGCCCAGGCCCGCAAGCAGGCCGCCACCAGTACTAGCCTGGTCCTAGACACCCGGGCCAGCTTCGGCTTCACCGCAGCACCCGGCACCACCGACGACGCACGCATCCGACACCTCACCCTCGCC 45856 28 69.0 0 ....-..............CCCGCC..TT | A [45870] ========== ====== ====== ====== ============================= ====================================================================================================================================================================================== ================== 10 29 95.9 49 CTGCTCCCCGCACCCGCGGGGATGGTCCC # Left flank : GCGGGGGTGGCTTTGCCGATGTCGTGCACTCCGGCGAGCCATACGGCCAGAGCGCGGGCGTCCGGCTCGCCCTGCGGCAACGCCTCGGCCACCAGCCTCCGCACCCCTATGGGCAGCCACTGGTCCCACAACAGCCCGGCAACCGCGGCACTGTCCTCCATGTGCCGCCACAACGGCAGCCACCCATCGGTGTCACGGTCGTGCTTGGCCCACACCGACCGTGCCGGCCCCCCGAGCCGACGCAGCAGGCCGACATGGGCATTCCCCCCAATGCTCATGAGGGATTGATACAGGCAGAGCGCCCCTGCGGGCGGCAGAATGAGCAAATAGGATGATCCACAGACAGGGGGCGCTGGCCAGCTACACGGTGTCCGGCTCACCACCCCGATCACTCGGAATCCCTAGCATTTACCGGATGTCATTTAATGTACTTTTTGCCGGAATCTCCAATGCTTGCTGACTTCATGCTTTCCCAGCGCTAAACCTGCAGGCCAGGCAGT # Right flank : TCGACGCCCAGGACCAGGGCGCCGGCGAACAGCAGCTGCGGGCGCTCGCGGCCGAAGCGCTCGGCGAGGTCTACTTCCGCGACGGCGGCCGCCGCGCCACCGGCCTGGGGGTCGAGTTCACGGATGTCGAGCACGTGGAGTTCGACCTGTAGAGCTGGAGTGACGAAGCTCGCTCGTACAGGCGATCATGGTCACCACGGCCACGGCCTTCTCCTCTGCATGCGAGGAAGGTAAGGGCAGTCTCTCGCCCGCCACTGACAACGAGTCACCCCGAAGCCGAGAAGGGACGGGAGGACCGGGCGGCCGGGCAGGAGACGTAACAGCGGATGCGTCGCGCTCCGGCCGCCCGCAGCCTCAGTCACGACGGCTCCCGTACTGGCTTCTAGCTGCCGGCCCATCAGTAAGTGCCGCTAATCTGTGAGTTGTTCTCTTCGCCGAAGCTTGGTAGGGCCGCCGGCGGAGTGCGGGTCTTCACACTTGGGAGGCTGAGCGGACGTGGG # Questionable array : NO Score: 4.38 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:-1.67, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCACCCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCACCCGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-14] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [46.7-21.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 27-3764 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADGFY010000010.1 Streptomyces solaniscabiei strain FS66 NODE_10_length_215927_cov_76.403540, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================================================================== ================== 27 29 100.0 32 ............................. AACGTCGTGACCGGCGTCGGGTGGGGCTTCGG 88 29 96.6 32 .............T............... CCCCTTCCGGGTCATGGGTGAACAGAGCAGAG 149 29 96.6 32 .............T............... CTCACGCCCCACCCGGTCCGGGTCTACGCCGA 210 29 93.1 32 ...........G.T............... AGCCAGCCGATCGGTGGGATGCCGGGCCGGCG 271 29 96.6 32 .............T............... GACGAGTGGACCGTGACCCCCTCGGCCCCCGC 332 29 93.1 32 .............T.A............. CAGCCGCGGCGGACCACCCGGGCGGAGCGCAA 393 29 96.6 32 .............T............... ACCCACATGACCGAGCCCACCGACAACGCCCC 454 29 100.0 32 ............................. GGGGGATCGGGGTCCTCCCGGCGGCGCCGTAG 515 29 96.6 32 .C........................... GTCCCGATCCCGACCGGGGCGAACGTCACCTG 576 29 96.6 32 .C........................... ATCGCGGCCGAGTTCGACCGGGCCGCGACCGC 637 29 96.6 32 .C........................... GCTAACGCGGCGAGCACGTGGAAGCTCCGCAT 698 29 89.7 32 .C.........GT................ TCGTCGACCAGGGCGGCGAGGATCGCCCCGTC 759 29 96.6 32 ...........G................. CCTTCTTGGGGTTCAGGTTCGAGACGAGCCGG 820 29 96.6 32 ...........G................. TGGTTGGGCATGGGGAGGGTGAGGCCGTTGAC 881 29 96.6 32 ...........G................. AACCTGCCCCGCGCGGACCACTGGGATGCCCG 942 29 100.0 32 ............................. GACGGCGACGTGACGCTGACCGTGCAGCCCGC 1003 29 100.0 32 ............................. GCCTGCCGGGGCGTGGCCGCCTGCGCGACGAC AC [1016] 1066 29 96.6 32 .............A............... TGGATGTACCAGCTCTTCGACGTCATGCAGGG 1127 29 96.6 32 .........A................... TGCTCCGCGCCCTCTTCCTCGAAGGACTCGAA 1188 27 89.7 32 ....C...........--........... TCACCCGACGTGATCTTGCAGCCGAGGAACGT 1247 29 96.6 32 ...............A............. GCGGCCCGCATCTGGGCGAGGATGCCGGACAC 1308 29 100.0 32 ............................. AGGGTGTCCATTGCCTCGTCGCCGTTCTTGGC 1369 29 100.0 32 ............................. GAGACGCTCGCCGTGGAGATGTGCCAGGTGTG 1430 29 89.7 32 .........A.G...........C..... GAGATCCCCAGGTCGCAGTGCTCGCAGAAGAC 1491 29 100.0 32 ............................. TACGTGGCCCGGGACAGCGACGGGGCCCGGTG CCCA [1497] 1556 29 89.7 39 ..........................GGA TGGTCCCGCCGCCGGCGCCACCGCCTCCGATGCCGATAT 1624 28 89.7 32 ........T.....-..........C... ATCGCCAAGGTGTCAAGGCATACGGTGGTCCA 1684 29 96.6 32 ..A.......................... AAGTGGGACTCCAACTGGCAGGCCGGCCACCC 1745 29 96.6 33 ...T......................... GTCACCCAGCACTCCTACGACCCGCTACGCCGC 1807 29 93.1 32 ..........G...T.............. TGCTCCAGGTTCGTGCCCCAGAAACGCTGGCT 1868 29 100.0 32 ............................. ATTTCCCGCAGTGCCCGGTCGAGTTCGTACTG 1929 29 100.0 32 ............................. GGGTTCGTCCGGGTGTCGGCCTGGTAGCCCGC 1990 29 100.0 32 ............................. CTCGTCGTGTACGTGCGCGGCGTCATACGGGA 2051 29 96.6 32 ..............T.............. CCCGAGCACGCGACGGAGGTGACGCTCGATGA 2112 29 100.0 32 ............................. GAGGAGCGCCGCGACCTCGCCCTGGCCACGGC 2173 29 96.6 32 ......T...................... GCGGATCTCAACGGGGCCCGTAAGGGGGCGTC 2234 29 86.2 39 .......T..................GGA TGGTCCCGCCGCCGGCGCCACCGCCTCCGATGCCGACAT 2302 28 93.1 32 ........T................-... ATCGCCAAGCTGTCGAGGAATACGGTGGTCCA 2362 29 89.7 32 ..A.................A..T..... ACCGATCCCCGCGACAATGGCCTGTACGTCAC 2423 29 96.6 32 T............................ AGGCGCAGGAAGAACGTCTTGCCCTGCCTGGG 2484 29 96.6 32 .........A................... GGCTCCAGGTCGCCGCCACTCTTGCCGTTGGC 2545 28 93.1 32 .C.......-................... CGAGGGGAGCAACCACCCAAAACAGGCGGGCC 2605 29 100.0 32 ............................. GACAACGGCAACTTCCAGTACCGGATCGTCCA 2666 29 100.0 32 ............................. CTGAGGCGGGGTACGCGAGTCGTACCTAGCAA 2727 29 96.6 32 .................A........... TGGTGCCACCGACACAACTGCCCTATGGGGCA 2788 29 96.6 32 ...........G................. GACGAAGCCGCCATGCAGGGCATCCACGGCAC 2849 29 86.2 32 ...............T.A.........TT GTCGCCGCGGCGCCGAACAGCAGTACCTCCCG 2910 29 86.2 40 ....C.........G..A.......C... TCGAGGCTGGACAAGGTCGTGTCGCTGGACGTCTGCTCCC 2979 27 93.1 32 .............--.............. CAGACGCCGTCCTCCGTGCGCAGCCACCGGAT 3038 28 96.6 32 ........-.................... GGCACGGAAGGTGCTCGGACTGCCGGACCCCG 3098 29 96.6 32 ...............A............. TCGTCGGCCATCATCAGGGCGGGGATGCTGTC 3159 29 93.1 32 ........T........A........... ATCTTGTACGGCGCCGTCTCCGCCAGGGCGGG 3220 29 93.1 20 A.................A.......... GCAAGATCCGCTCGCCGGGT Deletion [3269] 3269 29 89.7 32 T................A.......C... CCTCCGTCCAGGTCGCGGCGGTTCTGGTACAA 3330 29 96.6 82 ............................T ACCCCGCCCCGTACCCGGCCACGGCGATTCCGGCCGCATGCTCCCGTCCCTCGTAGCGGGTCGCCACGTGGGCCAGGCCGGT 3441 29 89.7 32 ..............TTG............ GACGACGGACTCATGCGCGAGTCGCGGGCGAT C [3450] 3503 29 96.6 32 ............G................ GACGGGGACCGGTCGGCCTGGTCGCCCCTGGT 3564 27 82.8 29 T...........A....--...G...... AGGGGAACAGAAGGTACTTTGAGCGCTGC 3620 29 75.9 24 ACT..G.....G..........G..G... CGTCCGACGGCAGGAGATCGCGTT CC,C [3642,3646] Deletion [3673] 3676 29 89.7 31 GC...............A........... GGCCGGATCTACGGCTGGGGGCCCAGGCCGC 3736 29 93.1 0 .........A..............C.... | ========== ====== ====== ====== ============================= ================================================================================== ================== 61 29 94.7 33 CTGCTCCCCGCACCCGCGGGGATGGTCCC # Left flank : TAGCGATCACCAGTTACGGCGTCACCC # Right flank : CTGGTTGAGCGTGATGTCGGCGCCCTCGGAGGGGGCTGGGGGAGGAGGTATCCACCTCCTCCGGGGGGTGTGGGGGGTGCGAAGCGGATCGCGGGTTTTCCGCATTCCGGCTGTGACCAGGCGAAACGCGGGTTTCCCGCGATCCGGAGGGCTGGGAATCGCGGATTTCCCGCACTTCGGTGCTGACCTGCTGTGATGCCGCGATGCCGAGATCGACGTACTGCTCGTTGTTCGCCGGGTTCCGGTAGACCCGGGTCACCCAGGTCGGGCGCTGCGTGGCTTCGTCGTAGAACGAGACGCGGCTTCGACCGCCGGATACGGGCGGTGTACCTGCGGCGGAGTGCGGGCGGCATGTATCCGTTGGCCGCAGGGGCCTGTCGGCCCCGTGGCCGCCCCGGGAGCGGGCGCGGCGCGCGGCCGGGCGGCGGGCGTACCGCGCCGGGCGATGAGGGCGCGGCAGAACGCGACAGGCTGGGCGCGGCGGCTGCAGCGCGGCGCGG # Questionable array : NO Score: 5.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.74, 5:0, 6:0.25, 7:-0.07, 8:1, 9:0.26, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCACCCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCACCCGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.40,-5.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [21-55] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [20.0-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.64 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //