Array 1 81286-81630 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADNAG010000010.1 Bifidobacterium longum strain BSD2780061689_150309_E10 NODE_10_length_85622_cov_66.5885, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =========================== ====================================================== ================== 81286 27 66.7 39 G..C....C.....C...GCC....GA ACCGCCACGGCGGTCATCACGATCGCCACGGTCATCGCG 81352 27 96.3 54 ........................A.. ATCGTCACGGGAGTCGCGAGCATCACGGTCATCGCGATCGTCGAAGTCACGGTC AGA [81358] 81436 27 81.5 33 GG.A..A.................A.. ATCATCGCGATCATCGCGATCGAAGTCACGGTC 81496 27 100.0 21 ........................... GTCGTAATCATCCTCGAAGTC Deletion [81544] 81544 27 100.0 30 ........................... GTCACGATCGTCGAAGTCACGGTCATCGCG 81601 27 81.5 0 C.............C.....C....CG | GC,C [81618,81622] ========== ====== ====== ====== =========================== ====================================================== ================== 6 27 87.7 36 ATCGGAGCGACGGCGACGCGGACGGTC # Left flank : GACTGTGGCCGCGCTGTTCATTCTGGACTTCGTGTGCATGGCGATTCTGTAACGCTGATTGACAACGGATTAGCCTTTAAGGATTAATCCGCCGCCATACGGCATAAAGGCCGGGCTCTCACAAGGGCCCGGCCTTTGTTGTTGCCACAGTGATCAACGCCCATGAGTACCTTCGATGATCATCCGCCATTCTTGATGCATGGGAATAGTTGTCAACCGACAACTAAACGTACATGGCGGCAGCACGAGTGCCTTATTCAACATCGAAATATGCAGCGCGAAGAAGCCGAAAAACCAAAAAGGCTTCTATACCGAATGAAACGGTATAGAAGCCTTTTGGTTTGCGATCAAGCCCTTCTCACCCGAGAGAAGCTAGAGAACGATCAGTCCTCGAACGGATCAAAGTCGCGACGGACGCGGCGACGCGGGCGCTCAGTACGCTCTTCGCGGTCGGCGCGGTAGTCGTCGTAGTTGTCGTCGGTGGCGTAGCGCGGGTTACG # Right flank : GATCGTCACGGTCACCACGGCCACGGCCGCCACGGCGGTCATCGCGATCGCCACGGCTCGGGCGGGCGTTGTTCTCCTGATCCTCGAAACCAGGAATGGCCAGGGAGATCTTGCCGCGATCATCGACACCCTGAACGATCACCTCAACGGTGTCGCCTTCCTTGAGCACGTCTTCGACAGCGTCAATACGCTCGCCGTTGGCCAGGTTGCGGATCTGGGAGATGTGCAGCAGGCCGTCGGTGCCGGGGGTGAGGTTCACGAAAGCGCCGAACGACGTGGTCTTGACGACCTTGCCGTTGTAGGTTTCGCCGGCCTCGGGCACGTGCGGGTTGGCAATCTGGTCGATGATGGCCTTGGCCTTCTCAGCAGCCTCGCCACCCTCGGAGGAGATGAAGACGGTACCGTCATCCTCGATGGCAATTTCAGCGCCGGTGTCTTCCTGAATCTGGTTGATCATCTTGCCCTTCGGGCCGATGACTTCGCCGATCTTCTCAACCGGG # Questionable array : NO Score: 4.79 # Score Detail : 1:0, 2:3, 3:0, 4:0.45, 5:0, 6:0.25, 7:-0.43, 8:0.6, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATCGGAGCGACGGCGACGCGGACGGTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,0] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGGAACGACGGCGACGCGGACGATC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.40,-0.30] Score: 0/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [31.7-30.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.41 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 202973-211582 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADNAG010000002.1 Bifidobacterium longum strain BSD2780061689_150309_E10 NODE_2_length_405196_cov_64.7625, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 202973 33 97.0 32 ................................T GCTCGGTAACGCCTGCGACGTTTTCAACCCGT 203038 33 100.0 34 ................................. CCGAGTCCATGAAGGCCAACGTGCTGAAAACCAA 203105 33 97.0 33 ................................C CGATTTCATCGAGAGCGGCGACCAAATCAGGGA 203171 33 97.0 33 ................................G GACATGTTTTCGTGGGCTTGTTCGCGCTGGCCG 203237 33 100.0 36 ................................. TTCGGTGTTCGACGCGGTTGTACCGCCTGACGGCAG 203306 33 100.0 35 ................................. AGCTAGTCGCCCCTGTAACCCTGTACTTCTTCCAC 203374 33 100.0 33 ................................. CATCCTCTGGTTTTTCAATATCAGCATTGGATT 203440 33 100.0 33 ................................. CTGCATTCATGAATGATAACAAAACCATGTTCA 203506 33 100.0 33 ................................. TTAGCCTGTTTTTTGTTTAACCAAGGTTCTCAT 203572 33 100.0 33 ................................. ATTGCCCGGGAAGCTGTTGTACGCCGCGAGCTG 203638 33 97.0 33 ................................T CCCAGCAGATTGACACCGCCGCAACTAACTTGG 203704 33 100.0 34 ................................. GCTGGCGCGGGTTGCCGCCCACCGTGGATGAACG 203771 33 97.0 32 ................................G GCTCAGAGCGCGGCATAAGCCACGCGCGTATG 203836 33 97.0 33 ................................C TGTATGAGGCTCATGGCGCTCTGGCTGCGTCCG 203902 33 100.0 33 ................................. ATGTTCTGGTAGGTCAGGTTGCTGCCATCGACG 203968 33 100.0 33 ................................. TCACGCCTCGCACGCAACCGACGGTCGGCGTGG 204034 33 97.0 33 ................................T TAGCTAAACTCACATGTTAAGTATTACAGCCCA 204100 33 97.0 34 ................................G TTGTATCCGGCCCTAATATTTCACGAAAGCAAAA 204167 33 97.0 34 ................................G TCGTTGTATGCGTCCCAGTGCCATGTGGGGTCTG 204234 33 97.0 35 ................................T TGAATTTAATTATGGTGATTGTGATTTTGATTTCA 204302 33 97.0 35 ................................G GCCACCGATGCGGCCGCGAGCATCAAGAAGATCAG 204370 33 97.0 33 ................................T GTTCGGCGTAGTCGTTGAGCTTGTCGTAGGCGG 204436 33 97.0 35 ................................C AGTGCGTCGGCTATCTCCTTGCGTGTGGTGTGCAC 204504 33 97.0 33 ................................C CATCCCATATGTTCAACAGGCTATATGCGGTCT 204570 33 97.0 35 ................................G CCCATCCCACGCCGCCACACCGGAAACCCCACCGG 204638 33 97.0 33 ................................T TCAGCAGCAGATTGGTTTGGCCGGACGTGGTCG 204704 33 100.0 32 ................................. ATGCGTTTACGCGTGCCTGTACTCGGGCGCTA 204769 33 97.0 34 ................................C ACGCTCGCACGTTTGGTCGTTTCGCCCAGCCACG 204836 33 100.0 33 ................................. TTACGTCCATTGCCTGAGTACCATAAATGCCGT 204902 33 100.0 32 ................................. AAAACCAAGTCTTGAATATGGCACTGACACGT 204967 33 97.0 33 ................................G TTGTAGGTGAGGCTGTCGGGGTCGTTGCGTCCG 205033 33 97.0 35 ................................C CAGAGGCGTTGCGCGTCTCGCAAAGCCGTGATATC 205101 33 100.0 33 ................................. TCACCACCGAACCATGCCAATACTGCGGCAACG 205167 33 97.0 35 ................................C AAAACAACCAACAGGGTCAGCAGTCGTATTCGGGT 205235 33 97.0 33 ................................T CCAAGCAGTGGAAGGACTGGCAGGCCGAGGGGA 205301 33 97.0 34 ................................T ACAACACCCAACTCGCACACAGGATCTGCAACCA 205368 33 97.0 33 ................................G ACCTGTTCATGCCGCGTGACGGCTGGACGTTCG 205434 33 100.0 34 ................................. AGCCGGTGGACATGGCCGACCTGGACGCACGCGA 205501 33 97.0 33 ................................C AGACCAGAATCAAAAGGTATCCGCACCCGTCGC 205567 33 97.0 34 ................................T GATTTACCCACGTCTGGGATTTGTAGCCGTAGCG 205634 33 100.0 33 ................................. ACGCGGGGTCCTTGGGCGTGCCCGTGGTGGGCG 205700 33 100.0 33 ................................. AGTCCGATACAGTCTCGGTTCGAATCCGAGGCG 205766 33 97.0 34 ................................G CGTATTCCTTGTAATCCTGGTCGCAGAACAGGTA 205833 33 97.0 36 ................................T CCGCAGTTTTGATATGTCACGAAATTATGGTTGCAA 205902 33 97.0 32 ................................C TCTCCGGATTGGGTGCGGCACTCGCACCCATC 205967 33 97.0 34 ................................G AGCTCGGCTACCGGTCATTGCGGGCCACGCGGCC 206034 33 100.0 32 ................................. ACGATTTACGGGCTACTCCGTTGGAATCGTAT 206099 33 100.0 34 ................................. GGTCGGGCGAGCTGCCTGAACCCCCCGAATATCC 206166 33 100.0 33 ................................. CTTCCGCCGCCGTGTCCATCAGCGCGGCCTACG 206232 33 100.0 35 ................................. ACAGTAGCGGGCAGAACAATTACACGAAGGCTCAG 206300 33 100.0 33 ................................. GCGTGAAGCGCTGGGAGCGTGACCGGTATTTGC 206366 33 97.0 33 ................................T CGAACTTAAGCGATGCTGCTGCATACGCTCGCG 206432 33 97.0 34 ................................C TCAAGCAGAAACGCAAATAATCCACCTCATAGAA 206499 33 97.0 34 ................................C CAGATTTTAACGCGCCTAACGGTATCCCCGTGAT 206566 33 97.0 32 ................................T TATCGCCTTGCAACGTGACGCGCCGTCCGCCA 206631 33 97.0 35 ................................T TGGGATACGTTCTACCTTGAAATGGGCGGCCTACG 206699 33 100.0 33 ................................. CGCTGACCGCGAGCGTTCCAACCGCTAAACCGG 206765 33 100.0 34 ................................. ATCAGAAAACACCGTTTATTTTGGAGGTTCCCGC 206832 33 97.0 32 ................................C TCGGCGGTGCGGCGTAAGTAGATGAATTGCCA 206897 33 100.0 34 ................................. TGATGAGGTCGTTGAACTCGAATGGATGAGACTG 206964 33 97.0 32 ................................C ACGTCCACGCCCAATCGACGTTTTCCACGCCG 207029 33 100.0 34 ................................. AGTTCTTCGACCTTGAACTGGTGTCGGAAAAAGA 207096 33 97.0 33 ................................T TGATTGATATTCCCGTTATCAACGAGATGACCC 207162 33 97.0 34 ................................G CAACGAGGCATCGCCTGAATATCAGCGGCGCATG 207229 33 97.0 34 ................................G ACATAGCGTGCATCCGCTTCGGATTGCGTGATAA 207296 33 100.0 33 ................................. TCCAGCGTGTCGAATATGTCAACGCCCATTGTA 207362 33 97.0 35 ................................T CCATAATTGAGGTAATCTCAATCAGGCAAATACCG 207430 33 97.0 36 ................................T GTTGGAATTGGCGCAATCGTATACGATTGAGGTCAA 207499 33 97.0 34 ................................C GTTCGGATGCCGTCGAATATCGTATTGGCGACAC 207566 33 97.0 33 ................................G TCTACCCGCGTCGTCATTCACGCGGAGGAGGGT 207632 33 100.0 35 ................................. TCTATCTACGCAGGACGGCGGAGGAACAGAAGAAC 207700 33 97.0 34 ................................T TACACCTGATTGTTGCAATAAGCCGCCAAGTATC 207767 33 100.0 33 ................................. AGTTGGTCAAGCAACAATACATCAATATCTACA 207833 33 100.0 33 ................................. ATGCTAACGGACGTGTCACCGTTGCTTCCAACA 207899 33 100.0 34 ................................. TCATCCAATAGGTCTACAGTGTATGCGCTGGTGC 207966 33 100.0 33 ................................. CACGCAAATTGACAAACTCGCACCTGACATGCA 208032 33 97.0 31 ................................G TACAAGCAGTTCCAGCTGCTTGAAGCCTAGA 208096 33 97.0 32 ................................C CCAGACATGCGACGAACGGTTTCTTGAGCTGA 208161 33 100.0 32 ................................. GGTCAGTGACGGTCACGAGCTGGGGTGGCAGA 208226 33 97.0 34 ................................C AGGCCGCAATGCGCCGCGAAATAATCCGGGAACG 208293 33 100.0 35 ................................. TCCAGCATGTCGAATACGTCAATGCCCATTGTACG 208361 33 100.0 34 ................................. GCAGAAAACGCAGGTGACCAACGAGGTGTTGGGG 208428 33 97.0 33 ................................T CCGCTTTGCCGTTGATGGTGTCCTTAAGATTCT 208494 33 97.0 33 ................................C ATGTCCACGTTGATGATGGCGTTACGATACTCC 208560 33 97.0 32 ................................T GCTGAATGAACTTGTCCAGCAGATACGGGGTG 208625 33 100.0 34 ................................. AACTGCTGGCCGTCGCAGGCACGCCGAACACCAA 208692 33 97.0 34 ................................T TGATAATGTTTAACTGTACATCCAGCTGGTGTAG 208759 33 97.0 34 ................................C TCCGGCTCCTGATTTCCCGATGGAGGTGATTGTC 208826 33 100.0 33 ................................. GGGCGGTGTACGCCGGCTTGTCCCAGTCGGGCG 208892 33 97.0 33 ................................G CCAACGGCTCCGTTATCATGCCCAAGAGCGTGA 208958 33 97.0 35 ................................G GCTTCGGTGTCGCCACGTTTCGCCGCCATCTCCAA 209026 33 100.0 32 ................................. ACCAGCAACAGCAGTCGCAGGAACCGGACCCG 209091 33 97.0 34 ................................T TGAAGTGGTCGCCCGCGTCCTTGCCCGTCTGCGC 209158 33 100.0 31 ................................. AATCGGTTGCCATGGTAATGACGCAGACCGC 209222 33 97.0 35 ................................G CCCGCGAACGTCTCGGCTGGTGGAACGATCAGGCC 209290 33 97.0 32 ................................C TTGTCGGAAGTCTTGGAACCATGCGTTGCGCG 209355 33 100.0 33 ................................. GTTCGCGGCCTAGGGCCACGACGAGCGGGAACC 209421 33 93.9 35 ............................G...C CGGCAGGTTGCGCGGCCTTGGCCCCATTTCGGCGG 209489 33 97.0 34 ..................A.............. TGGCTGATGGGCATACAAGCCCATATCTCCCACG 209556 33 97.0 32 ................................G CCATAGCCAACGCACCGCCGTTGTTGACAACG 209621 33 97.0 34 ................................T GGACCGGCCCGGCGTCTACGGCCAACGTGGTGAC 209688 33 100.0 34 ................................. TCAATGTACGCCGCATTGTCACGAACGCAGGACA 209755 33 97.0 34 ................................T TGCCACCCTCGCCCACGGTTCCAGCGCCGCCCTC 209822 33 100.0 33 ................................. ACGACCACCCCGAAAACACACCCGTATGGGACG 209888 33 97.0 34 ................................T GCGAGGTGACGGAACCGGAGTTTTTGAAACGTCA 209955 33 97.0 34 ................................T GGAACGGTTCAGGCAGGAGCGTCACCAGATCCGA 210022 33 97.0 33 ................................T CCGTGCCGGACGACTGGATAGCGAGATACCCCA 210088 33 97.0 35 ................................C AACAGGAGCGTTTGCATATCAAACATGAGATTATA 210156 33 100.0 34 ................................. TGACAGCCTCCAAACGTTTATCAGGCGCAATACC 210223 33 97.0 33 ................................T ATTGCCACCCTTGTGGGTAGTGTTGGTTTTCCG 210289 33 97.0 33 ................................C CGCCGTTGCCGCCTCCGTATGGGGGTGTTGCCG 210355 33 97.0 34 ................................C TGAGTGAGTGCGAACGCCTGTCGGGCGGTGTGCG 210422 33 97.0 35 ................................C ACTGGACTTGCCGACCGATTTGGCTCCGTCGAAAG 210490 33 97.0 34 ................................G GGTGAAACCGTTTGTTATGGTGGTGCCGGTACGA 210557 33 97.0 35 ................................C GGCCGTTGCGGATCTCCCGCAATCGCCGGACGGCG 210625 33 100.0 32 ................................. ACGCGCCTGCCGGACTTTGGTGATAGGCGCTC 210690 33 100.0 35 ................................. CGATCACCAATACAAGCAAGGACGAGGACGGGCAC 210758 33 97.0 32 ................................G CCGGGTCGGTGATGCTCGCCTTGTCGACGGTC 210823 33 100.0 34 ................................. ACATCTGTAAGCGGCGTCCGAAACTCCATTGCGC 210890 33 97.0 33 ................................C CGACCGTAGCGGTTGATGTAATCCTGTGGGATT 210956 33 93.9 34 .........T......................C TCCACGTGCATCTTTACCCGTGGCAGAAATGGCT 211023 33 93.9 32 ............A...................C GAATGGCATTACTCCGGCGCCATCTTCCCCGC 211088 33 97.0 32 ................................C AGGGCATCGGGAACGACATCATCGCCCACGAT 211153 33 97.0 33 ................................T CATGCTCACTGGGGTACCCGTATCCGCCGATAC 211219 33 97.0 34 ................................T ACCTTCAAAAGGTCTTCGGCATCATCGCTGTATG 211286 33 97.0 33 ................................C ACGCGAAGGTCGGCCGATGGCAGACGGCGAGCA 211352 33 100.0 33 ................................. TCCAACACAGGGTAGTAGTCCTTGATAATCATG 211418 33 100.0 32 ................................. AACATCGCTGGCGGGCCGCCGCGAGGGCGGTC 211483 33 100.0 34 ................................. CCCCATATCCTACACGGGGCGAAGCCATACCCGA 211550 33 97.0 0 ................................C | ========== ====== ====== ====== ================================= ==================================== ================== 130 33 98.1 33 GTCGCACCCCACTGGGGTGCGTGGATTGAAATA # Left flank : GACGAATCGCAAGATAGCCTGCGTTACTACAATTTAGGGGCGAAGTATTCTTCGAAGATTGAGCATCGCGGAAGACAGCGGCACCTGCCAATCGATGACGTGATGATGCTCTAATGTCGGTTCGTGTGACGGTTTTCCATGATGACTGGGCAATGCAAAACCTTACTGTGATGAAGACCAAGGCGGATAAAACGAGGTAGGACAGTATAGGACGATACGATTAAAATCGTGGCTGAGCATCGATGCTTGATGCTGCAGCCATGTGACCAGCGCGAACTCTGAGTTCTCATGAAATACTTGTTCTTTCGCACTGAGATTAATGAATGCTTGGAGACTGATTATGTTCTCCTCGTCGTTTGATAACTCAAAAGTGGATGGTCTGTTGATGTTTTTGGTTCGAGAATTTGTGTATTGAGCGATGTACATGGATTTTCGCGATAAAATCAGTTTTGAGAACAGACGGAGCTTCCATATTATGGAATGCTATGCCCATTCTCGCG # Right flank : CGGCATGGAATTGTCCCCGCTATAGACGTTGCCACTCATGGTGGCAGACGCGGAGAGATAACCGCGCGACGGCTAAACCGGACGTCTGGAATTGTATAATTGGGCTCACTGTAGCGAGTATGCGAGGTGAGCCATGAGTCTTAGGGAGTTAAGGCAGAAACGCGGGTTAACCCAGCGTCAACTAGCTGACAAGTCAGGCGTGCCGCATACACGAATCGCCACGACTGAAACCGGGTCAAGACCTATCGAGAACATGAGTCTTGGCATGGCTATCAAGCTGTGTGACGCGCTCAGGGTATCTAATCCGCGCAAGCTGTTAGAGGCTGATAAGCCGAAAGAAAGCGCCGCCAAGTAGGCGGGCGCGTGCCCTAATCAATTCTTCGCCCGACTGTAGGCGTTGTGTGCAGTCGGCCTAAACTCACTGGGTTCACCCCATAGTCTAGGCACTCATGGCGTGTCCCAAGGTGGACGGGATACGCTGAAGTCAATTTTGAAAGTGA # Questionable array : NO Score: 5.65 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.49, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCCACTGGGGTGCGTGGATTGAAATA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCCCTCGCGGGTGCGTGGATTGAAATA with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-7.00,-6.80] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [56.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.68,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //