Array 1 4037-163 **** Predicted by CRISPRDetect 2.4 *** >NZ_RSCQ01000019.1 Bifidobacterium animalis subsp. lactis strain 2007B Contig_19, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================== ================== 4036 29 100.0 32 ............................. AACGGTGTCCAGGGCACAGCATTCATCATCGG 3975 29 100.0 32 ............................. AGCATGTCCCCACACGCAGAGCACTGGCGTGC 3914 29 100.0 32 ............................. AACTGGGGGAACACGTCGGACGCCGGGTCATT 3853 29 100.0 32 ............................. GCGGTCAAGGCTGAGACGGACAAGATCAAAGG 3792 29 100.0 32 ............................. TGCCGCCTCGGTCAGGCCCATATATATGGCAT 3731 29 100.0 32 ............................. GGGTTCCAGGATTACATGGGCTGGCAGAACAA 3670 29 100.0 32 ............................. TGTGGCACGCCAATGGCAATAGGCCATTACTG 3609 29 100.0 32 ............................. GCTACGGCAATGCCGAGGACATGCCGGATGGG 3548 29 100.0 32 ............................. AGCATCATGCGTGAGCTGGGAGGCGCACGATG 3487 29 100.0 32 ............................. ATCGTGCCGGACGAATACACGTCGGCGGCTTT 3426 29 100.0 32 ............................. GGGCGCCCCATCGACCGTGAATCCTACGGTGG 3365 29 100.0 32 ............................. GCGGCGGTCGGCTGTGTCTTGAGACGACGGTA 3304 29 100.0 32 ............................. GTGCCACCCGTGAAGACACCACCTTCGACCGA 3243 29 100.0 32 ............................. GGTAGCCGCTGATCGCACTGGTGGGCACACCG 3182 29 100.0 32 ............................. TTAGTCCCGGGCACCATCGTCCTACAGGAGGT 3121 29 100.0 32 ............................. CTGCTCATACGAGTATGGGACACCACGGCGAA 3060 29 100.0 32 ............................. GGCTGACCATACCCGAGCATGCCCCGCGCGCT 2999 29 100.0 32 ............................. TGCCCATCGACCTACCATACCTAGGGGAGTCG 2938 29 100.0 32 ............................. TCGCCGCCAGCGCTGGCCTCAGCACCGACGCC 2877 29 100.0 32 ............................. GATTTATCCCCGATGGTCATCTGCTGCAAACG 2816 29 100.0 32 ............................. TGTTGGCCGAATATCCGGTTCTGCCGGTCCGC 2755 29 100.0 32 ............................. ACCACAACCAAAAGCGACAAGCCTTCCACTGA 2694 29 100.0 32 ............................. TGGTCGAGCTTTTGCGCGTAGGCGCTCATGCT 2633 29 100.0 32 ............................. GGTTGAGTTGCGATTCGTTGAGCCCAGACGCT 2572 29 100.0 32 ............................. GGAGGAACCGGCGCGCCCGGCAATCAGACGAA 2511 29 100.0 32 ............................. ACAGGGTAGGCGCGGCTCGACCCAGCATTGGT 2450 29 100.0 32 ............................. GCTCGTATCGCATCAGACAGGCGTTTCGAGAA 2389 29 96.6 32 ............................T GCGCCGCAGGTCTGGAAGAATGTGCTGCTCAT 2328 29 100.0 32 ............................. GCCACCGGCATCAGTATCGAGCACGAGGGAGG 2267 29 100.0 32 ............................. GCCGACGACTGCTGCACGCTCGTCCACGACCA 2206 29 100.0 32 ............................. GCCACCACAAACGCGACGACATCGACCACACG 2145 29 100.0 32 ............................. ACGAGGAACGGCCAGGCGACGGTCAGCCATTC 2084 29 100.0 32 ............................. CGCAGGTATTTGCGCCGTTGGGTTATCTCGTC 2023 29 100.0 32 ............................. GGGAGGTTGAACAATTCATCCACGTTTTTGCC 1962 29 100.0 32 ............................. CCGTCACACCGGCCACCGGCTATGAAGTCGGA 1901 29 100.0 31 ............................. GCCACCGCACATACCGTCCGTCGGCCGTCAG 1841 29 100.0 32 ............................. AGCGGACGGATACTCCTCTATTGGGACGACGA 1780 29 100.0 32 ............................. AGGTCGAACCGCCGCGCCCATGCGTGCAGGTA 1719 29 100.0 32 ............................. TGACCGTGGATCATCTTGGCGCCGTGCACCGC 1658 29 100.0 32 ............................. CTGCACGCGGACGATGACGGCATGGTACGCTC 1597 29 100.0 32 ............................. GTTTTCGCCGCAGTCTCATCAATCTTCTGGTT 1536 29 100.0 32 ............................. TCACGCCACGAAGACGCGCCAAGCAAAAGAGT 1475 29 100.0 33 ............................. TTCTCCGTCTTCATCTGCGCGTTCTCCGCCTCG 1413 29 100.0 32 ............................. GCGAACTCGTCCACATGCCCGTCGGTGCGCCT 1352 29 100.0 32 ............................. AACAGGGGCAGATCGACGCGCAACAGCAACAG 1291 29 100.0 32 ............................. TGGCTGCCCACCGTCATCGCGGAATTGTCGGT 1230 29 100.0 32 ............................. GACAGCGAGTGGCGCTGCGCATTGGAGGACGA 1169 29 100.0 32 ............................. GCTATATGACCCTGCCCGCACGCCTGAAGTGC 1108 29 100.0 32 ............................. GCGAACGGCGGTGGTGGAGCGCCCGGCGCTCA 1047 29 100.0 32 ............................. GGTCAAGCGCCGAATGGTCTCAGGACAAGACA 986 29 100.0 32 ............................. TGTGGCACGCCAATGGCAATAGGCCATTACTG 925 29 100.0 32 ............................. TGAAGAGTGACTTGACTAGCGGGGTGTAGGTC 864 29 100.0 32 ............................. GCGTATCAGGCGTATATCAGGCCCATAGGCGG 803 29 100.0 32 ............................. ACCCTGGCCGATGTGCGCCGCCACGGGCCAAG 742 29 100.0 32 ............................. TGGGACGAGCTCGACACAATCGCACAGCACCT 681 29 100.0 32 ............................. GCCGGGCGCAACCGCACGCTCGCCCGCACACT 620 29 96.6 34 ............................G CGCTTTCCGCCTTGACCGCGTCTATCACGATCCG 557 29 100.0 32 ............................. TCGTCGCGCATGAGTGGAAAGTCGCCCATGGC 496 29 100.0 32 ............................. AGCTCGGGCGACTGTCACACCTTGCTCGCTTG 435 29 100.0 32 ............................. TGTTCGAGGTCTCGGTGACGGGAATCCCCGCC 374 29 100.0 32 ............................. AAGCCGTTCGCGAGATGATGGATCGCGTCTAC 313 29 100.0 32 ............................. ATGCGGTATTCACGTCCGAATGGCACGGCGAT 252 29 100.0 32 ............................. GGAGCCACCACCGCACTCACTGTGTTCAACCG 191 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================== ================== 64 29 99.9 32 GTGTTCCCCGCAAGCGCGGGGATGATCCC # Left flank : CGCTAGGGGACGAGTGGAATGAGGAACCATGGTAGTCATCGTTCTGACGGCATGCCCTGCAGGATTGCGCGGTGACGTGAGCAGATGGTTATTGGAGGTATCTCCCGGCGTCTTTGTGGGACGTATCAGTGCTCGCGTACGTGAGAAGTTGTGGGAGCGCATCGTCGACACCCTCAAAGACGGCAGGGCCATTATGGTATTCTCAGCTAGGAACGAGCAGCACCTTGATTTTCGCGTATTCAGATCCGATTGGCAGCCAGTGGATTGCGACGGATTGCAATTGATCAAGCATCCAAACGAGGAGAAACGCGAGACTTACGCGGGGACGAAGCGGCATGGGTGGAGCAACGCTGCTAAATACAGGCGTGCACGCAAATACCGTGGATAACAGCCGTGCGTTTCGGCAAGTGTTTCTTCTTTTAGACATTGTAGAAAAGAGAAGTGAATAAAAACAGACTTCCTTCTTTTCTGATATGTTGAGATTATTGGGATTTCTTAGT # Right flank : CTGACCTTAAATGGCTCTTCTCAGGTTAGTGTGTAGGGATGTCTTTGAGTTGGCTGCTGTGGATGAGGCATCGTTGGATGTAGCTGGTGGTGTTGGCGAAGCCCATGGCGTTGCCGCGCAGGGTCTCGAGCCTGCCGTTGATGGCTTCGGTGGGTCCGTTGCT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCAAGCGCGGGGATGATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCAAGCGCGGGGATGATCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 31349-29506 **** Predicted by CRISPRDetect 2.4 *** >NZ_RSCQ01000017.1 Bifidobacterium animalis subsp. lactis strain 2007B Contig_17, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================= ================== 31348 36 100.0 37 .................................... TTCGTCAGGTCTGACATGGTGTCGTTGGCGGTGCATG 31275 36 100.0 38 .................................... GAGGCAGGGCAGATACTCGACACGATGCCCGAATTCGT 31201 36 100.0 38 .................................... ATTAGCTGGGGCGAGCGCGTCGACTGTGACTTCGCCGA 31127 36 100.0 38 .................................... AGCTTCGATTTGAAGCTCGCGGACGTGCTGCTCAACGG 31053 36 100.0 37 .................................... TCGAATCAGCCCGCGTCGATGACAGTGACGGCCGACG 30980 36 100.0 37 .................................... GTGTACTCCAACAGGCAGGGACGTGTCTACGAGTGCG 30907 36 100.0 39 .................................... CTGCGTATCCGCGAACGGCACGAGACCGCGATACGCCAC 30832 36 100.0 36 .................................... TTATGGCCTTCGAGCCACACGTTGAAGCTCGTGATG 30760 36 100.0 33 .................................... TTCGTGCGAACGCCAGCACGGGCTTCCCGTTCT 30691 36 100.0 34 .................................... TCGCCATTGGAGACGCGACGCAGGATACTATCCG 30621 36 100.0 34 .................................... ACGACAAGCCGCCGCCACCGACATTCACCTGCGA 30551 36 100.0 38 .................................... GGCCGCTTCGGTGACGGGCTGGTTTTTCCACCACACGC 30477 36 100.0 35 .................................... ATTGAGATTGATACCCGTGGCGCCGCTGATGAGAC 30406 36 100.0 38 .................................... GGGTGTTATCCGGTATGCGGATACGGATCATGGTGTGC 30332 36 100.0 35 .................................... AAACAGGTCAATCAGCGGCGCAGGGAGGAGACGAA 30261 36 100.0 34 .................................... GCGATCGCCTACCACACCGCGCACCAGATCATGC 30191 36 100.0 36 .................................... GAGTGAACAACTCACTGTGCGAACCATCGAACCGTT 30119 36 100.0 38 .................................... CTTGCATCCAACGCGCACAGCATTGCATACGGGTATAG 30045 36 100.0 39 .................................... ATCATCCTCACGGAAATAGTGAGCATCCTCGAGAACCTG 29970 36 100.0 36 .................................... GGCCGCGATAGTCTACGAGGCGAACGAAGGCGTTGC 29898 36 100.0 36 .................................... ATCAACAACGCGGAAGTCGTGAACACGTTACGTATC 29826 36 100.0 35 .................................... TGCCACCACTGATCGCCGGCGTGGTGATTCCCGCG 29755 36 100.0 36 .................................... GCTCAAGACACTCACCGACCAGCTCAAGAAGACCGA 29683 36 100.0 35 .................................... GCGACACCGAACGCCGCCGCCACAGTCGGGATGGC 29612 36 97.2 35 ...................................A AGGGCCAGCAACGTCGTGGAGATCCATCAGGAGGC 29541 36 91.7 0 ...........T.T.....................A | ========== ====== ====== ====== ==================================== ======================================= ================== 26 36 99.6 36 ATCTCCGAAGTCTCGGCTTCGGAGCTTCATTGAGGG # Left flank : ACGCACTTCAACGATGTGCGCCTGAAGAACTTCATCGAGATGCGGCACTGGGACTCACTGCCAATCGAGCGCGCGGAACTGCTCACGCAGATCGTGAGCAACCTGTTCTACGATGTGGAGCGCCGCGGACGCCTCGAATCGTACTTCAGCGGACTGACCGGCGAAGACGTGCACGCCGCAAAAGCCGTGCTGCAGGCGCGCGGGGGAGACGCGAAGCCCTACGACCAGCCGATGGACTACTGGGCCGAAATGCTGGGCGTGGGGGATGCGCTCGCAGACGTGCCGGGCGACGCGAAGTGGCCGGAGGTGCGGCAGGGGTAGGAGCTATCCCGTGCGAGGGCTGCATCATGCAGCATAAAGCGGGGAATCTCTCGCATCAATACTTTGTAAGGATTTGTTGAGTTTGTGTAGATAAATCAGTCGTTTGTATCACGTCAATTTGTCTACCTCTCGCAAAAGCGCTTATCAGACTATGTGTATCAGTCTGTATTATGGCTACT # Right flank : ATGTACTCCGATTTTTATCTAAGCAAAAATGAAGTATGCTGAGAATAACGCAATGAAGCGAGGTGAAGGGTTGGAAGATACATTACCGATTAGTCTCATATGTGACTTTATCTTTTGTCCACGAAGGGCATGGTTAGAAATCCAAGGTGAGAAGATTGAGTCGTTACAGATGGAGCGCGGTTTTCATGACCATCGTGCAGTGGATGACGCCAACGGTGGCCGCGGGGATACTGACTATAGGGCAGTTAATGTGAATCATCAGGGGTGGGGACTGTCGGGGCGATTAGATGCGGTCCGGTTGAATGAAGACAACGGTGTGATTATCCGTGAATATAAAGCTACACCCGTGCGTAGGAGTATGGATGTGACACATGCCATGCGTATACAGCTCGCCTTGCAGGCTGCATGCATGGAGGATATGGGTTATCGAGTAGATGGGACTGAAATATTCTTTACCTCGCACCATCGGATTGTTCCTGTTGAACTAAGAAAATCCGATT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATCTCCGAAGTCTCGGCTTCGGAGCTTCATTGAGGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [10,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.10,-7.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA // Array 1 69492-68860 **** Predicted by CRISPRDetect 2.4 *** >NZ_RSCQ01000018.1 Bifidobacterium animalis subsp. lactis strain 2007B Contig_18, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================== ================== 69491 33 100.0 33 ................................. GCCGTCGAGGAGGGGTGGCTGCGTGATAATCCG 69425 33 100.0 34 ................................. CCAGACGCCGCGCACGATGCGGTCGATGTCAGAG 69358 33 100.0 34 ................................. CTTGACGATGCGACGGGTGGACAGCCAGACGCTG 69291 33 100.0 33 ................................. GCGTGACTGATGTGACGCCCGCGCAGGTGGAAT 69225 33 100.0 35 ................................. GCCTGGGTGGTCGCCGACGTCCGGGTCTCGCCTGT 69157 33 100.0 33 ................................. TGAAGAACATCATGATTCCTGTCGAATCGCTCT 69091 33 100.0 34 ................................. GTATCGCCAGTGTATTTCGGGGCGGCCTTGCCGA 69024 33 100.0 33 ................................. CGCCTGGTGTCCGCAGGTCGACGGCGCGCGTGT 68958 33 100.0 33 ................................. CTGCAGATCACCGACATTACGGCGTTCCATCCT 68892 33 93.9 0 .CT.............................. | ========== ====== ====== ====== ================================= =================================== ================== 10 33 99.4 34 GTCACCTCCCTTCGGGGAGGTGTGGATTGAAAT # Left flank : TCCAAGGAGGCTCATACCGAAGCGAACACGCACTCATGACCAAATAACCCAAAAACCAGCGCGCAGCGGCAATACCGCCGACCATGCGGAAAAGCCGCTGCTCACCCTGCTGAAAAACACTGCTCACAATGCGGAACGCAAATTGCTAAAACACAGCGGCGCACGCGCACCAGCAGATGCACCGCGTCGTCGCCGTAGGGCACATGCGCCAGCGTGCGCAGCCACGACGAACGCACCCTGGCATACGCGCCGCACGAGGGGCACCAGCGCGCGTCGTGCGAGTCCGGCTCGCACCTGATCTGCCTTAACCCCGGGCCGTCCGGCCTGCCAAGACGCCGCCACGAGAGCACACGAAGACCCATCTCATCCAAACCAAGGAAACGTTGGGGGTCGAACACGCTAAACTCGGGTTCAGGCCGTGTTTCCTCATTCAATTTCTCTATCACACAAGCAATGATGAAGCACGGCCCTTACACACTAACTTGAGAAGAGCCGGATAA # Right flank : GAGAGGTTTGAGTGGCAGTTTCGTCAGATAGTCGCCCGTTCTCGTTCTGTTGGCGGTGTGGATTCTCGTCGCCAATGCCAGACATACCGTTGTCTGGACGGGTTTGAGCTTCGGTGCCGGACGGTTCCTTGGTTGGTTCGCAAATGCGGAGGTGTGTTTGGTGGCCTTGGTGACCGTCTTAGCGATGCCTTCTCTGTCCGTTCCATGACATATCTGATTCGTCGCATGTATTTTGTCAAGTCGGTGTTTTGGTTTTGCGAGAAGTGCAAGAAAAGCATGAGCGCGGATGTTAGGAGACACCCAATCGGATTCAACAACCAGAAAGGGAGCTATGACAACCGAGTAGATTGCCATAGCTCCCTAATGTCACGCGATGACCCGTTTATGCTGTCTGAGGCGCGGCGCCCGTGGAGGGCACAGCGGTTTCCTTGATGAAACCATGTGATTCCGTCGTATCCGCTATATGATTCGCGCTGTCAATTTGCTGCTGCAGAGCCTTG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:0, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACCTCCCTTCGGGGAGGTGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [9,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.20,-8.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [45.0-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : NA //