Array 1 180675-181251 **** Predicted by CRISPRDetect 2.4 *** >NZ_JOFE01000013.1 Streptomyces griseus subsp. rhodochrous strain NRRL B-2931 contig13.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 180675 29 100.0 32 ............................. TGCGGGATCGGGATACTCTGTTTGGACACGAT 180736 29 100.0 32 ............................. CATCTACGAAGGCCGCGGATGGGACCGCCAGG 180797 29 100.0 32 ............................. AGGCCGACCAGCGGGCGGGTCTCCAGCGCGAG 180858 29 100.0 32 ............................. ACCCACTGGAGTGCCGACTTCACCGTGGACAC 180919 29 96.6 32 .................T........... TGGAGTGGAAGGCAGCCACCGTTCGTCAGTTC 180980 29 100.0 33 ............................. ATCCCGGTGAGGACGCAGGCGCAGACAGCGCCG 181042 29 100.0 32 ............................. GTATCGCGCGTGAAACGGGCGCGCCATCCGGT 181103 29 100.0 32 ............................. GGAATTGCCACTCGTATGCTCGTGGATTACGA 181164 29 100.0 32 ............................. GCCGCCGCCCTGCGGATGCTGCTCCAGGACGG 181225 27 82.8 0 ........--.....A.....T...C... | ========== ====== ====== ====== ============================= ================================= ================== 10 29 97.9 32 GTGCTCCCCGCGCGTGCGGGGGTGGTCCC # Left flank : CGAGCGCGGGCATGCGTGATGGCTCCTGTGACGGACACGGGGACGGCCGACGACCGGGGAGGGGAGAGCCCTGCGCGAGCGAGCGCCGGCGGTGCCCGCGCGATGACCGCGGGCCCCCGGCTGCCGGGTGGCCGAAGTTGACGCGTCGAAGTCTCGCCGCGCACCACCCACGGGGTCGTCCCCCCAGCAGCCGAACCACGCCCTGCCCGAAAGTGCCACACCCCGCCGACCGACACCCCTCGGAAGTGCTACCGCCGGGCATCCTTCTTCTGGCCGATCCTGGCGACCCGGGGGGCGACGGGCTGCCGCCAACAGTCCGGGGTACGACCGAAGCACGGGACAGGGCGCTGGGTGAACTGGCAGGCTGGGAAGCAGATCCCGGGGGGTGCTGACCTCGGCCTACCTGGCAGCCCATTCGAAACTTGAGGCCACATATGCCCGACTCTCAGGAAGTTCCCCAAAACGACCCCTCGGCCGGATAAACCCGCAGACCACGAAGG # Right flank : CTCCACACCCCCGCCCGACTCCACCCAGCCGGGCCCCCTCCCCAGTCGCGATACGTACCCCCACAGCCCCCGTCCACCCGGCAACACCGCAGGTCGCGTGCCCTATGGTCTCCGTTCATGAGCCGAACCACGCCGCCCCGCCCGGTGAACATCGAGGCGCTCTTCCCGAAGCTGGGCGCGTTCCGCGGTACGACGACGCGGCTGCACCCGCGGCCCGGCCGTCCGGACGCGGCGGCCAGTTCGGTCGGCGGCCCCGTGCTGTGGCCGGCCGACGAACCCTGGCCGGTCTGCACCGAGCCGCACAAGCGCAGCAGCGGGTACCGCATCGCGGACGTACGACGTGAGCGCCAGGTGCTCGCGGACGCCTGGGCCCGGGACCGCCCCACCGATGAGGAGCGGGACCTGCTCAAGGAGCTGGGCCGCAGGCACCGGCAGCGCGAGATCGCCGACACCGATCCGATCCCGCTGGTCGGCCTGGCCCAGTTGTATCGGCGGGACGT # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCGTGCGGGGGTGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [0,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCGTGCGGGGCTGGTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [40.0-25.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 185540-186728 **** Predicted by CRISPRDetect 2.4 *** >NZ_JOFE01000013.1 Streptomyces griseus subsp. rhodochrous strain NRRL B-2931 contig13.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ================================ ================== 185540 30 100.0 31 .............................. AGGGGTGGGGCGACGCAGCGTGACCCCCGCT 185601 30 100.0 31 .............................. CTCGGGCAGGGACGACACGTGCATAGCGATG 185662 30 100.0 31 .............................. GGTACATCACCGTCACCGCGGCCGGCCTCTG 185723 30 96.7 31 .............................G TCTGGCTGATCTCCCCGGTCATGTCGCCGTT 185784 30 100.0 31 .............................. GGATCCGCACCAGCATCACCGTGCAGATCCA 185845 30 96.7 31 .............................G CGGCGGGTACCGGACGGCGGCGGCGGAGGAG 185906 30 100.0 31 .............................. CGAGCAGCCCGTATGCCCCGTGGGTGCGGCG 185967 30 93.3 31 ............................AG ACTCGGCCGTTGCGAAAGCCGGAAAGTAAAT 186028 30 96.7 31 .............................G GCCTACACAGCTACATGGCGGGTCACGAGGA 186089 30 96.7 31 .............................A CTCGTAGGGTTCACCTCCTATATTCCCCCTA 186150 30 93.3 31 ...........G.................A TGGATGTGGCGACGGGCCCGGAGGGGTGGGA 186211 30 96.7 31 ...........G.................. AGCTGGCCCGGCCGGCACGAGCCGATGGTTG 186272 30 93.3 32 .T.........G.................. CTTGCTCCAGCTCACCACCGCAGACGACTTCG 186334 30 90.0 31 .T.........G................A. CCCGGACCCGGAGGTGGCGCCCGTCCCGTAG 186395 30 90.0 31 .T.........G.................T GAATGGACACTGCCTACACACCCCCGGCGCG 186456 30 86.7 31 .T......T..G.................A CCGCCCACACCTCGGCGCAGAGCGGGGCGGA 186517 30 90.0 31 .T.........G.................G TTCCGTCGCCGTTCGTGAAGCACTCGCCGCC 186578 30 83.3 31 .T.........G.......A........TG ACCTCGGCCTTGTAGAAGCAATCCTGTTGAA 186639 30 86.7 31 .T.........G......A..........G CTCTCGGCCTCGGTGAGCAGCACGGCCAACA 186700 29 86.7 0 .T.........G.............-...A | ========== ====== ====== ====== ============================== ================================ ================== 20 30 93.8 31 GCGGTCCCCGCACACGCGGGGGTGGTCCCC # Left flank : ACCGACAAAATCCCACCCCACATCCCCAGGGCGACAGAATCCCGATCGCCGGACGCCACGGAACCAACCCACGAAGCGCTACTGGTCGAATGCACCAACTGCCGCCGCCCAGGACCACCGCAAGCCCTCCCCGACGGCCTCTGCCGCCCCTGCCACCACGCACACACCCACGGCGGCGAGCCCACCACCCCCACCCCGGATGAGGTCGCCGCCGTCAAAGCCCACATCGCCAACCTCCGCAACCTCCTCAAACCCGTCTAACCCCCAGGCGATGGGTCGTTGTTGGGCAGGACGGCCACACCGCACCCCGGGGCCGACTCCACGGAAGACAGAGCCACGCCCCTTCCACCGAAGCCGGGACAATGACACCAGTGGTGCGCAGAATGGCATCAGCCGAACCACACACGTGACCACTTTGCGCCAGAAGGTGAGATATGCCGGTTTCCCAACAACATGGTAAAAACCGCCTCCCCGTCACCTAAACCCCCAGGTCACGAAGG # Right flank : ACGCGCCATCGCTTACGTGAGATCACGGCCTCGAAGCCTGGAAGGGCGGCACCTACGGCCCCTGCTCCGGCGGGTTCCGTGACCATCCGAGCCCCTGCCCGCCGGCCCCGATCCGGCGCTCCGGAAGGCCATAGATTCCGAAAGGCGGGAACAGGTCGACGCGGCGCGGGTAGCCGCCCTCCACGCACGCCCGACACAACAGATCACGGCCCCGATCGGTGTGCCGCACGGCAGTCACCGGAGCGCGCCAACATGCCTCGCACGTGCGGACATCCGTGGTCGACAGATCGGGGCTCATCCAGCACCCTCAAGCGCAGTGGCCCCCTCGTGACACGGACAGGCGCACGTCGGCAGACGGCACAGGGCGTGCACACCGGCCAGGTCTGTCACCAACGCGCTGCGACACACCACGCTGCACGGCCCGTCCGCACCGGCCGTCAACGCGTCCAGCGCTACAACCGGCTCCCCGGCCTCATCGCCCCCGGTGATCGGATCACCTC # Questionable array : NO Score: 5.31 # Score Detail : 1:0, 2:3, 3:0, 4:0.69, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.36, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCGGTCCCCGCACACGCGGGGGTGGTCCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCACGCGGGGGTGGTCCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-22] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [45.0-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 190013-191020 **** Predicted by CRISPRDetect 2.4 *** >NZ_JOFE01000013.1 Streptomyces griseus subsp. rhodochrous strain NRRL B-2931 contig13.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ================================ ================== 190013 30 93.3 31 .......T.....................G ATGCGTTGCTCGGTGACGACGCGGTTCGTCG 190074 30 93.3 32 .......T.....................G ACCCCGACGACACCCTCACCAACCAGAGAGAC 190136 30 96.7 31 .............................A TGGTCCGCGACGCCAACCGGTCACTGAACAA 190197 30 100.0 31 .............................. GCTCCTGCTCGCTCTCCTCGCCCAGCGGGCC 190258 30 96.7 31 .........................C.... CGCCGCAGGCCGCCGCGCACACCTTCCGCAT 190319 30 96.7 31 .............................T GCGACACGGGGCTCCCGGCCGCCGACCCGGA 190380 30 100.0 31 .............................. AGCGGGCGCACTTCGAGCAGCGCCAGGCCGA 190441 30 93.3 31 ...............C.............T ACGACGTGCCCGGCGATGACCTCCCGGACTA 190502 30 96.7 31 .............................T TCGCGGCCTCTTCGATCCACACGATCATGTA 190563 30 96.7 31 .............................T TCGCGGCCTCTTCGATCCACACGATCATGTA 190624 30 96.7 31 .............................A CCGGGATGATCATCCCGAGGATTTCCGGGAG 190685 30 96.7 31 .............................G GCACGTTGCCGACGGTCAGGTCGAAGGTGCC 190746 30 96.7 31 .............................G GGTCGAGCGGGACCGCCAGCTCACGGCGATG 190807 30 100.0 31 .............................. ACTTCATGACCTCGCGGACGGTGGCGCCCTC 190868 30 96.7 31 .............................A CGCTCACCATCGGGGAAATGGCCCGGCATCT 190929 30 86.7 31 ............AT...........C...G GCGGCAGTGATCGGCGTACCTGTACGACGGT 190990 30 80.0 0 ...........C.GT...C..C.......A | G [191003] ========== ====== ====== ====== ============================== ================================ ================== 17 30 95.1 31 GTGGTCCCCGCGCACGCGGGGGTGGTCCCC # Left flank : TGCGTCGAGCGCGGGTTGAGCTTCGACCGTGGCGCCGGGAGGACTTCGTCGCCGACCTGGACGATCACTTGATGGACATCCTCGGGGCCTGACGACGGGCATCGCTCACTGCTTCCTGGCTAGTCCCTGGCAGGAACGACGAGTTCCTTGAGCCGCCGAACCTCCGACCAGGAGTCGCGGGCACGCGGGCCCTGGGGGCGCGGGCCGAGCCGGTCGGCTCAAGGCACCGGTAGTGGTCGTCGTAGTCGAAGACCTCACTGATGTCGGCCACCAACGTGTTCGCACAGCGAGCCCAGAACACAACGCCCCTGGCCGACACCTGCGGAGGGCCGGTCCGCTTCACTTCCACCGAAGCCCGGCCGACGAGATCGACGGCGGGCAGAATGACATCAGCCAAGCCATGCACATAAACCCTTTGCGACAGAAGGTCGGATATGCCGGTTTCCCAAGAAGTGAGTAAAAACCGCCACCCCGCCACCTAAACCCCCAGGTCACGAAGG # Right flank : ACGGATGTTCGCGGTGCCGCTTCGGCCGTCCCGTGTTCCGTAGCCGCCCCCGGGCACTCGGCGCGACACCGGGCCGCCCTCCCAGTGCCCTACGGAGAGGCTCCCCGACCGCTCAGCCCAGCCCCTCCTCCACCAGGGTCGCCCACTGCGCCACCACCCGGGCCCGGCGGGCCGTGTCGTCGGTGAGGAGGTTGGCGAGGCCCAGGCCGCGGGCCATGTCCAGGAGGCCCTGGACCGTTTCGCGGGCGCCGGGGCGGGACTCGTCCGCGCCCAGGAGTTCGACCGCGATGCGGTGCGTCTCGCGGCCCACCCGCGCCTCCAGTTCCGTGACGCGTGGGCGGAGCTGGGGCTCGTTGGAGGCGGCCACCCAGAGGTGGAGCGCGGCCCGGAAGAGGGGGCCGGTGTAGAGGTCGACCAGGGCCGCGACCACCTCCGCGCGGCCCTGGACGGGGAGCGCGCGCAGGGCCGCCGAGCGTTCCTCCGCGACATACTCCACCGCC # Questionable array : NO Score: 5.28 # Score Detail : 1:0, 2:3, 3:0, 4:0.75, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.27, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCACGCGGGGGTGGTCCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCACGCGGGGGTGGTCCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [43.3-26.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 4558-4831 **** Predicted by CRISPRDetect 2.4 *** >NZ_JOFE01000003.1 Streptomyces griseus subsp. rhodochrous strain NRRL B-2931 contig3.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 4558 30 100.0 31 .............................. CCGCGCGCCTGCATCCGAAGACGGCTGAGCG 4619 30 100.0 31 .............................. CCAGCTCGACCAGGATCAGCCGCTCGACCAG 4680 30 96.7 31 .............................C AGGTCACGGGGGTTGTGCTCCTGTCGGGGAT 4741 30 96.7 31 .............................A GGTCCTGCCAGTCGGTGAGGGGCCGGACTTG 4802 30 76.7 0 .....................TCAACAG.. | ========== ====== ====== ====== ============================== =============================== ================== 5 30 94.0 31 GTGGTCCCCGCGCACGCGGGGGTGGTCCCG # Left flank : CAACCGGGAGGTGTACTACCCGAACTGGGCAACCGCCGAGCCGGGCGAGCACGTGGCCGACGTCGCCATCCCCTTCCGCAGCGTCTCGATGCCCGACCTCTGAAAGTCAACCGACGACGGGCGACACACACCGCAGGTTGCAACCGCCGCCCTGCGCAAGCACCTCGGGAGACCGCCATACCGGCCCCGAAGGAATAGCCGCGCCCCAAGCGCACACCATCAGCCTCCGCCACCCCCTCAACCCGTCGAACCCGTCGAACCCCAACCACGAAGCCCCTCCCGAAACGGGGTAGGCACACCGCACACCGGGGCCCAAAGCCACGAAAGACAGAGCCGCACCTCTTCCATCGAAGCCGGGCCGATGAGACCGGATGGTGGGCAGAATGGCATCAGCCGAACCACACGTGTGACCACCTTGCCCCGGAGAGCGAGATATGCAGGTTTCTCAACAAGTTAGCAAAAACCGCCTCCCCGCCACCTAAAACCGCAGGTCACGAACA # Right flank : GCGAATGGTCGCGCGGCTCGCACCGCTGCCTGGACGAGGAACAGCCCAACCGGTCAGTACGTTTGGTCGTCTCCATCGTCATCCCTTGCGCGTTGGGCGTTGTGTCGGATGTGTGCGTGGTGGGCGTCGCGGAGGGGGTCGGTGATGTGGAAGCTGTGGTTGCCGGGGTGGTCCTCGTACAGTCCGCAGGTGGCCGCCCGCACTCGTCGCCCACAGGAACCACAGGCTCGCGGGTGGTTCGGTCTCCGCGGTCCACAGGCGGGACGCGTGCTCGGCGGTCTCGTCATGCTCGCCCAACTCGCATAAGACATAGGGCTTGTCTTCGAGGAGGTCTTCGGCGTCGTCGGGGCCGTCGTCCATGGCGAGCAGGGCGGGGAGTGCTTCGTCGGGCGGGAGGTTGGTGATGGCGGTGCATTGCAGCACGGGGGCGAAGGTCCCTCTCGTGGAAGTCCGTGGAGGCCGGGTCGGATCGTGCGAAGTCCCGCCCGCACGCGCACAGG # Questionable array : NO Score: 5.68 # Score Detail : 1:0, 2:3, 3:0, 4:0.70, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCACGCGGGGGTGGTCCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCACGCGGGGGTGGTCCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 8244-8395 **** Predicted by CRISPRDetect 2.4 *** >NZ_JOFE01000003.1 Streptomyces griseus subsp. rhodochrous strain NRRL B-2931 contig3.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 8244 30 96.7 31 .............................G ACACCGAGCTACGCAAGAGCATCACGACGCA 8305 30 100.0 31 .............................. ACGGCAACTGCGTCGAACTCGCCCAGCTCCC 8366 30 93.3 0 .CA........................... | ========== ====== ====== ====== ============================== =============================== ================== 3 30 96.7 32 GTGGTCCCCGCGCACGCGGGGGTGGTCCCA # Left flank : CTACGGGGCGCCCGCAGTCGAAGGCCGGGAGTGGTGGCGCGAGAGCCTGGATACGCCGCCGGAAAGGTCTCGGACCTTCTCCTACTCCGAACTGGCCGTCCACCCCGAGAAGCGGAAGCAGGGGCTGGCGGATGCCCTCTCACGGGCTCTCCTGGCCGGGCGGCCCGAGGATCTCGCAGTCCTCCTGGTGGACGTCAAGCACCCCCGCGTGCAGTCCCTGTACGAGGGCTGGGGCTTCCGGAAGGTAGGGGAGCGTCAGCCCTTCCCGGACTCGCCGGTCTACGCCGTGATGCTGGCCGACCTCCCGCTTGACGAGAGCCACGGAAGGTAGAGCCGCGCCTCTCCCATCGAAGCCGGGCCGATGAGACCGGATGGTGGGCAGAATGGCATCAGCCGAACCACACCTGTGACCACTTTGCCCCGAAGAGCGAGATATGCCGGTTTCTCAACAAGTTAGTAAAAACCGCCTCCCCGCCACCTAAACCCGCAGGTCACGAACA # Right flank : AAGTCGACGCACTGGAAGTAGCTGGGGTACGTCGTGGCCCCCCAGCACGCGGGTTCCCCCGCCACAGCGGACGGCCGCAGGCAGGGCAGGCACCGCCGTACGCGGTGGAGGCTGCCCCTCGCCGCCGCCTACGAACGGGACCGGCGGTCGCCCGTACGTCACCGCGCCCAGCGGACTACGTCGCAGGTACCGGTTGGTCACCGTCTTCCGCCTGATACGCCCCCGGGGCCCGCTGGCTAGCGTCGTCCTCATGCGTATCGGACTGCTCGGCACCGGAAATGTCGCCCGCGCCCTGGCCCACGGCTGGCGCGCCGCAGGGCATGACGTCCTCCTCGGATCGCGCCACCCGCAGGAGCGGGGTAACCTCGGTCTGCCCGTCGCGGGGCTCGGCGAGACCGCCGCTCGCGCGGACGTCCTGGTCAACGCCACCCCCGGTGGCGTCTCTCTGGACCTGCTCCGCTCCATCGGAGCGCCGGTCCTGGCCGGCACCCTGCTGATCG # Questionable array : NO Score: 4.01 # Score Detail : 1:0, 2:3, 3:0, 4:0.84, 5:-1.5, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCACGCGGGGGTGGTCCCA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCACGCGGGGGTGGTCCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.40,-2.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [46.7-28.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.41 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 32180-32586 **** Predicted by CRISPRDetect 2.4 *** >NZ_JOFE01000003.1 Streptomyces griseus subsp. rhodochrous strain NRRL B-2931 contig3.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ========================================== ================== 32180 30 93.3 31 ............................CG TCACCCGGCCGGGAAGCGCGGTGATGAACCT 32241 30 100.0 31 .............................. CGGGGATGCCGTATACGGATATCTCGCGGGC 32302 30 93.3 31 ............................CA CCTGCTGGATGCGGGCCCGCAGCTCGGGCAC 32363 30 96.7 31 ............................C. CGGCGACGGTGCGCCCCTGGTGGTTGGTCAC 32424 30 90.0 42 ................T...........CG GGTTCGCCGTGCCGTAGTCGACCCCGACCCAGTGCCGGCGCA 32496 30 100.0 31 .............................. CTCCGTGGCAACCTGACCCCACTCACGGCCT 32557 30 86.7 0 ...........T...A.........C..C. | ========== ====== ====== ====== ============================== ========================================== ================== 7 30 94.3 33 GTGGTCCCCGCGCACGCGGGGGTGGTCCTT # Left flank : CACCGACAAGATCCCGCCCCGCCTCCCCGGGGCGGTGGAAGTCCGTTCGCCGGGCGCCACGGAACCGATCTACAAAGCCCTCGTCGAATGCACCAACTGCCGCCGCCCAGGCCCACCACAAGCCCTCCCCGACGGCCTCTGCCGCCCCTGCCACCACGCACACACTCACGGCGGCGAGCCAACCGCACCCACCCCGGACGAGATCGCCGCCGTCAAAGCCCACATCGCCAACCTCCGCAACCTCCTCAAACCCGTCTAACCCCTGCCCCAAGAACCCCCGTTAGGCAGGACGGACACACCGCATCCCCAGCACCAGCCCCACAGAGAGCAGAACCGCAGCCCACCCGCCGAAGCCAGGCCCAGACAGGACCGGCGGCGGGCAGAATGAGCATCAGCCGAACCACACGTGACCACTTTGCGACAGAAGGCGATATATGCCGGTTCCTCAAGAAGTAAGCAAAAACCGCATTCCCGCCACCTAAACCCCCAGGTCACGAAGG # Right flank : TGCGCCCCGAGCGAAGTGGCAGGTCACACCCCGCGCGGGTACTCCCCCTTCCCCGTCCCGATGATCCCGCCCGGGTCCCGCAACCACACCTGCTGACCCCGGTCGGTCACCGTCAACCCGAACTCCTCCGCACCAGGGCGACCGGCCGACTCGTACTCCCACCAGGTCTGCTCGATCTCCTCCCACAACAGCCCGATCCCGTACTGCCACACCTCCTCTCCCGAAGCCGTCGAAGCGCCACCGACCTCGCTCGTCACCCACACGCGCACCCCGCCACCGGCGACACTCTGGTGAACCATCCGCACACCGGGCAGTCGCGCCCCCGCGAACAACGCGAACCCGAGGTCCAGCAACCGGGCCGGGTCCAGACCGGCCGCCCGCGCTCGCCCCCTCCCCCGTACCTCATGCAGATCGGGCACGCGGTGCGAGCGCATCGGCATGTACGTGGCCCCGCCGCAGAACGGCCCGACCGCGCTGCCGTCCCCCTGAACCCGTAGCCG # Questionable array : NO Score: 5.53 # Score Detail : 1:0, 2:3, 3:0, 4:0.71, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.56, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCACGCGGGGGTGGTCCTT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCACGCGGGGGTGGTCCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [46.7-25.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 4 37872-38023 **** Predicted by CRISPRDetect 2.4 *** >NZ_JOFE01000003.1 Streptomyces griseus subsp. rhodochrous strain NRRL B-2931 contig3.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 37872 30 100.0 31 .............................. TGCACCGTCGCCAGGCGAGCGCGCAGGACGA 37933 30 93.3 31 .........................C...G AGCGCGCGGTATCGTAACAGGGCTCGGCCGA 37994 30 90.0 0 ........C...................GT | ========== ====== ====== ====== ============================== =============================== ================== 3 30 94.4 32 GTGGTCCCTGCGCACGCGGGGGTGGTCCCC # Left flank : ACGTCACGGAGTTGGGCAAGCTGGGCGGGGTCGGTCACTCGCTCGCCCTGAACGAGCACGTCGGTGGAGCCCTCAACCTCGTAGAGGGTGGGGCCATCCCCGTCGTCACTGGTGGTGCCGAGAAACCTGAGAACCGTCATGACGCCCTCCGCGTGCACTGAGTGGAAGTCCAAGATGTGATGGATGGTGAGGGGGTGCCGCCGGATCGCGGATGGAATTGCAGATCGCTCAGGTGGCCCGGGAGTTGAGCGCGGCCAGCAAGGGCGGCCCGGACAAGCGTAAGCAGAAGGGCTACCACGCACACGCCAGGTACAACGCATACGGAGCACGGCGCCCCAGCTCTCACGCTCAAGCCGGACCGGCCGAATCAGCGCCAGGCACAATGACACCAGCCGCACCGCACATGCGTGAACGCTTCACACGAAAGGCGAGAAATGCCGGTTTTCCAAGAAGTAAGCAAAAACCGCCGGTCCGCCACCTAAACCACCAGGTCACGAAGG # Right flank : TCGAGCGACCCGCCGCACCTGCCCCCGGCCCGGGAGCGTCCAGGCGCGGCCCGCCCGAGGCCGCCGCCCTCGCCCCCGGAGCACCGCCCCTACGCTTCCGACGTCCCCGACACCGCCACCCGGAACCCCACCCCGATCGCCGCCAGGTCCTCCTCGTACGCGCCGTGGCGGCGGGCGCAGCGGGCCAGGTCTCGGTCGTGGCGGAAGGCGCCGCCGCGGGTGATGTGGGGGTCGAAGGCCCAGTCCTCGGTCTCCGGGACCCTGGCGGGCGCGCCCGGGTACGGGGCGTAGAGCGTGGACGTCCACTCGTCGGCGTTGCCCGCCATGTCCAGGACGCCGAACGGGCTCGCGCCCTCCGGGAACGAGCCGACCGGCGTCGTCGTGCCGACGCCCAGGTCCACCAGGTTGGCCAGGCCCGTGCGGTACTCCTCACCCCACGGGAACTCCCTGCCGTCGTCGCCGCGCGCGGCACGTTCCCACTCGTCCTCGGTGGGCAGGCG # Questionable array : NO Score: 3.89 # Score Detail : 1:0, 2:3, 3:0, 4:0.72, 5:-1.5, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCTGCGCACGCGGGGGTGGTCCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCACGCGGGGGTGGTCCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-10.80,-6.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [46.7-15.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 5 616797-616581 **** Predicted by CRISPRDetect 2.4 *** >NZ_JOFE01000003.1 Streptomyces griseus subsp. rhodochrous strain NRRL B-2931 contig3.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 616796 30 93.3 31 ...........T.................G TCCGGATCACGGCGGCGGGCCGCCGCCGGGC 616735 30 96.7 31 ...C.......................... TTCCCGGGCGTGAGCGCTGGACCCGGCAGGC 616674 30 100.0 31 .............................. ACAGCGTGAAGACCGAGCGGTAGCCCGTCGC 616613 30 83.3 0 ..A.........TGT.......G....... | G,GG [616585,616587] ========== ====== ====== ====== ============================== =============================== ================== 4 30 93.3 31 GTGGTCCCCGCGCACGCGGGGGTGGTCCCC # Left flank : CCGACAAAATCCCACCCCACCTCCCCACGACGACAGAAGCCCGATCGCCGGACACCAAGGAACCAACCCACGAAGCGCTACTGGTCGAATGCACCAACTGCCGCCGCCCAGGCCCACCACAAGCCCTCCCCGACGGCCTCTGCCACCCCTGCCACCACGCCCACACTCACGACGGCGACCCCACCACCCCCACTCCGGACGAGGTCGCCGCCGTCAAAGCCCACATCGCCAACCTCCGCAACCTCCTCAAGCCCGTCTAACCCCTGCCCCACGGCTCCCGGTTGGGCAGGGCAGAAACGCCGCATCCCCAGGACCAGCCCCACAGAGAGCAGAACCGCAGCCCACCCGCCGAAGCCAGGCCCAGATAGGACCGGCGGCGGACAGAATGAGCATCAGCCGAACCACACCTGACCACTTTGCGACGGAAGGCGAGATATGCCGGTTCCTCAAGAAGTAAGCAAAAACCGCCTTCCCGCCACCTAAACCCCCAGGGCACGAAG # Right flank : GAGCGGCCCGGGGTCCACTTGGCCCTGACACTGCGCGCCTGCTGTTCGCGCGACCCTCCCCCGGCCCGCAGGCATCTGCCGCCTGCCGAACGGCAGAGCGCCCGGTCGCCGTACGAGGGGTACGGCGACCGGGCGCTCCGGTTCCACGGGTCAGGTCGGGGGAAGCGGCATCGGGGGGACAAGCCGCTTCCCCCGGTGGGAACAGCGCCTGCGGTCGGTCGTCGCGGTCAGGGGGAATCGCGCGGCGGGCCGACCCCACAGAGAGGCCCTGTTCCGGCCTTCCGGGTCCTGCCAGGTCCCGTCGGGCTCGGTATCCATGCTGCCGGGCGGGACGGCTCGGCGGGGCGGGCGAAAGGCCCCGATGGCCGGGTCGTAGGTCCTTAAAAGGTGCATCAGTGATCGAAAACAGCCATCAAATGCGGTCATGCGTACGGATAGAATCGCCCGACCGCACATGGGGCCGACGGGGAGGCAGGATTGTGGCCAAGGCAAAGACGATC # Questionable array : NO Score: 3.71 # Score Detail : 1:0, 2:3, 3:0, 4:0.66, 5:-1.5, 6:0.25, 7:0.01, 8:0.6, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCACGCGGGGGTGGTCCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCACGCGGGGGTGGTCCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [25.0-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //