Array 1 22501-22933 **** Predicted by CRISPRDetect 2.4 *** >NZ_PRBL01000021.1 Campylobacter jejuni strain CB334 21, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ================================================================================================ ================== 22501 35 80.6 96 A............A..........-T...A.TG... ATTCTTTTACTTAAAAAAATATTATATTTTTAAATAATACTTTATTAAATATTTGCATGAAAAAATAAATATAAAATATTATGGAATATGTTTGAA AA,T [22529,22535] 22635 36 88.9 30 ........................GT...A..G... GGCATTTTTTTGAATAAAATCAAGCAAAAT 22701 36 100.0 30 .................................... TATTAATTTAATATATATTTTGAGTATGCT 22767 36 100.0 29 .................................... TAGTATTCTTTTCTTGGGCGACCTTTTGT 22832 36 94.4 30 .............A...........T.......... AGGAATAGAAATAACTTCTGAGGTTTCGGA 22898 36 94.4 0 .............A...........T.......... | ========== ====== ====== ====== ==================================== ================================================================================================ ================== 6 36 93.0 43 GTTTTAGCCTATTGTTAATTGTTTACATGGTAAAAT # Left flank : ATTTGGTGATAAATTCTGGCTAATACGAGATAATTTAGCAGTTTGTGAAAATGGCAGAATTTTTGATTATGATGATTTAGGAAAATTGATAGAAACTCAATATGAGTGCATTTTAGATAATGTTTCCAAAGTAAGTTCTAAAAAAATTCTAGCAAATATAATAGATTTGAAAAATATCATCATTGATAATTATTTTATTAATTTGATAGAACATACTATAGATGGTAATAAATTTGAATTTAGCCATGATATGAATTTAATCAAATATAAAGGCTATGTAGCAAATTTAAACACTTTAGAGATTGCAGGACTACCGCAAGAGATGGAAAAGGTAGGAGATGAACTGATTTTGCCTGATTTTCCAAAAAGGCTAGATGAAAATCTTATAAGAGAGTTTCAAGCCCTGATAAAGTTAGCCTTTAGAAAGGATTGTAATAAAATTAAATTATAGAAAACGCACTTTTTAACGAATAAACGCTCAGGTGAAGTGCTAAACCTTT # Right flank : AGACTTATCTCAAAAGCCTATTTTATCAATGTTTTTTTCTTATTTTTTGAGCAAAAACCTACGCATACCCTTTTTTCATTTTTTGTTTCTTTAACCTCTCAAAAAAAATTTGTGCCTCATTAAAACTTGGAAATACATTATTTTTTCTTCCTGTGCAACTTTTAAAACGCACATTTCCG # Questionable array : NO Score: 2.76 # Score Detail : 1:0, 2:0, 3:0, 4:0.78, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGCCTATTGTTAATTGTTTACATGGTAAAAT # Alternate repeat : GTTTTAGCCTATTATTAATTGTTTATATGGTAAAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.60,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [86.7-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0.41 Confidence: LOW] # Array family : NA // Array 1 22778-22221 **** Predicted by CRISPRDetect 2.4 *** >NZ_PRBL01000018.1 Campylobacter jejuni strain CB334 18, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 22777 30 93.3 36 .CT........................... GGCTAAAACTCTTGACCTAGCTTTTCAAGCCAAAGT 22711 30 100.0 36 .............................. GGCTAAAACTCTTGACCTAGCTTTTCAAGCCAAAGT 22645 30 100.0 36 .............................. GGCTAAAACTCTTGACCTAGCTTTTCAAGCCAAAGT 22579 30 100.0 36 .............................. GGCTAAAACTCTTGACCTAGCTTTTCAAGCCAAAGT 22513 30 100.0 36 .............................. GGCTAAAACTATTCTACCCAAATACGCATTAAACTC 22447 30 86.7 36 A.C..........GC............... GGCTAAAACCAAATCCAAAGAGTGTGAAATGGAAAA 22381 30 93.3 35 ..A..........G................ GGCTAAAACATCTTAGCACCATAAATCGCTAGCTA 22316 30 90.0 36 .A.......T...G................ GGCTAAAACCTTTCAAAATCAATTTTGCAAACTTTA 22250 30 76.7 0 AAA......T.....GG.T........... | ========== ====== ====== ====== ============================== ==================================== ================== 9 30 93.3 36 TTGATTTTACCATATAAACAATTAATAATA # Left flank : TTAGTAAGAACTGATTTATTTGTAGATAAAGAAAATAAATTCCATGCAGTGTCTATTTATAAAGCAGATTTTTCTACAAAAAAACTTCCAAATAAAACCCCTGCAACTACATCAAATGGAGAAACCAAAGAAGGCATTGAAATGAATGAAAATTATAACTTTTGCATGTCATTGTATAAAAATACTCCAATTAGCGTAAAAATAAAGGGCATGAAAGAGCCTATCATTTGTTATTATCATGGTTTTAATACTTCAGGAAGTAAAATAACTTATAAAAAACACGACAACAATTATCACAACCTTAGTGAAGATGAAATGGTTGTTTTTAGAAAAAATGATAAAGAATCTATAGTGGTAGGAAAAATACTTGAAATTAAAAAATACAGTATAAGTCCTTCAGGTGAATTAAGTTTAATTGAAAACGAAGAGCGTAAATGGTTTTAGATATTTTTGCTCAAAAAATAAGAAAAAACATTGATAAAATAGGCTTTTTAGATAAG # Right flank : GGCTAAAAATAGCTTTTAAATATTTAAATTCATAAGAAAATATTTCTTAATCTACTTTCATCACAACTTTTCAAAAAATCATAGATTTTCTTTCTATAAGTTGATTTATCCTTTTTCCAAGTATTTAGCGTTGGCAATGGAATCGTTGTAATTTTGGCAATTTTAGAATCGCTTAAACCTGTATTAGAAGAATTAATAGAATTTGAAAATATTTCTTTTAATTCTTCTTGATTAGTGTTTTTTAAAAAAAGATATATTTTTTCCCTCCAATTATCTTTTTTTTGTTTCCAGTCTCTAATAGTGAAATAAGGGATATTAGTAATTTGTGAAATTTGGACATCATTGTTCATCAGGCTTGAAACCACTATCTAAAATTATTTTTGTCATTACACCCTTAAGTTTATCAAAATGATTTAAAGCTTGCACATTGCTAACTCTAAGCAATCTTATTTTCCCATCTTTTTTATAAAACACCTGAAAAACTTCATCGCTTTGTTTGC # Questionable array : NO Score: 2.81 # Score Detail : 1:0, 2:0, 3:0, 4:0.77, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.98, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TTGATTTTACCATATAAACAATTAATAATA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:86.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [9-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [78.3-80.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA //