Array 1 14993-10535 **** Predicted by CRISPRDetect 2.4 *** >NZ_PGEJ01000011.1 Alicycliphilus denitrificans strain CD02 NODE_11_48.1109, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 14992 36 86.1 30 T...AAAT............................ AGGGTTGTTATCCAATCAAGGGCGCAACTG 14926 36 100.0 29 .................................... AACGCCCTCCACCGCGCGGGATGCCGCGC 14861 36 97.2 30 ......A............................. AACACACGGCGGCGTCGTTGGGCCACTCCG 14795 36 100.0 30 .................................... GGACGCCATCGGCAAGGGCTACGCCTGCCT 14729 36 100.0 30 .................................... GCAGGAAGGCATTGGCACGCTCCCACGTGT 14663 36 100.0 30 .................................... TCATCAATGCTGGATTGGTGGTGCTCTATG 14597 36 100.0 30 .................................... TCGTCATGTCGGCGCCCCCGGATGAGCCGC 14531 36 100.0 30 .................................... GGTGAGCGCGTCATCGTCGCTGCTAAGCAC 14465 36 100.0 30 .................................... TTCCAGGGCCTTCTTCCATGCGGCCTGGGT 14399 36 100.0 30 .................................... CAGCTCGTCGCGGGCTTGCAGGCGATGAAA 14333 36 100.0 30 .................................... GGTGGGTTGACGCATTTCAAGCGGGATGCT 14267 36 100.0 30 .................................... CAAGCTCAATCCGACCGAAGGCGATACCCA 14201 36 100.0 30 .................................... TCGCCGGGCGTGCGAGTCACAGTCAGCCAG 14135 36 100.0 31 .................................... CCTGTGGGGGCGGCGAGACTACAACCAGCAG 14068 36 100.0 30 .................................... TAGGATCATGTTCATTCCCCCATAAATCGT 14002 36 100.0 30 .................................... CGCGGCACGCGAGGCCATGAAGGCCGCGCA 13936 36 100.0 30 .................................... CCACAGGGCTCATGTCAATCATCATCCCCT 13870 36 100.0 30 .................................... CAGGTCACACCGTAGGATCTGCTTGCGCAT 13804 36 100.0 30 .................................... CAGCCGACGTCTGTCGGCACGTGTGGCCTT 13738 36 100.0 30 .................................... GGAGCACACATGGCCCTCTATCTCGCACCC 13672 36 100.0 30 .................................... CATGGCCACCTGGCGCCTGCACCTGGCCTA 13606 36 100.0 30 .................................... CTGCCGGGCTGGCGGGTCAACAGCTCGGCC 13540 36 100.0 31 .................................... TCAGGCTCAAGCGCAAGGAAACACCGCTCTA 13473 36 100.0 30 .................................... GGTCTTGGTGGGATGTGTGACATTCGCGCA 13407 36 100.0 30 .................................... CGTGTACTCGGCGGTCGAAGTGCGCATCGA 13341 36 100.0 30 .................................... CGATTTCCGCCGCCATCGCCTTTTGCGATG 13275 36 100.0 30 .................................... CGAGCGGGTTTTGTATGGCGTTGCCGCTGA 13209 36 100.0 30 .................................... CCTTGCTTCAAACATTGAGGATGGCTTCTA 13143 36 100.0 28 .................................... GCACGATATCGCGGGTGTGGGGTTTGAG 13079 36 100.0 30 .................................... GACCTGGTGGTGGCGAATAGTTGCCGCGCT 13013 36 100.0 30 .................................... AAATGCGGGCATTCGATGCGCTGCACTTCT 12947 36 100.0 30 .................................... CGTGACGTAGTGCGGGAAGCCCTGCATCCA 12881 36 100.0 30 .................................... CGAGCACCCCGCCGCGAAGCGGATGCGCGA 12815 36 100.0 30 .................................... GTCTAGCGAGAATGTAGTTCCGGCTGCGGT 12749 36 100.0 30 .................................... GACCGAGTCCGTCACGATTCACGTCAGTGA 12683 36 100.0 30 .................................... TGCCAGCGCGCACACAAGCGCGCAGGCGGT 12617 36 100.0 30 .................................... CTAAACAACCCGCCTGGAGCAGTCCATGGC 12551 36 100.0 30 .................................... GTGCCGGGGCTAACAGAGCAGCGGCCATAC 12485 36 100.0 30 .................................... GAGGCAAGAACGAGACACGCGCTTAGTGCG 12419 36 100.0 31 .................................... TGCTGACTTCGTTCAGCCATGCGTGCTCGGG 12352 36 100.0 30 .................................... TCTTCCAGGCGTCGATGGTGCGCCTCTTCT 12286 36 100.0 29 .................................... CACCGGGACGAATGGGAGCAGCGCAGGAC 12221 36 100.0 30 .................................... CGACCGTGATGGGTATACCAACGGCGCGAT 12155 36 100.0 30 .................................... CAGCCTGATTGCTCGGGCTGCTGCGGGCGA 12089 36 100.0 30 .................................... CCAGGGTTTGAGGGGCAGTGGCACGCCATT 12023 36 100.0 30 .................................... CGATGACACTGTGATCGACCGTCGCACCGG 11957 36 100.0 30 .................................... GCTTCAGAATGTTGTACATGCTCGACGCAT 11891 36 100.0 30 .................................... AGCGGCCTTTCTCGGGATTGGCACGTTCCT 11825 36 100.0 30 .................................... AGCGCACGTTGACGGGCAGCGTGCATTCCA 11759 36 100.0 30 .................................... CTCTGCAAACGTGAAGCCTTCGGCACCCGT 11693 36 100.0 30 .................................... CCCCTCACGGGGCGCATTCAAGCCGTACCA 11627 36 100.0 30 .................................... TCGACAGTGCGAATGCGCCCTACCTGGCCC 11561 36 100.0 30 .................................... CGCGCTCCTGCGCGGCTTCGAGAGCGGCAA 11495 36 100.0 30 .................................... GCTCGGTGCTCGCGTGCGGTGCGCATTTGC 11429 36 100.0 30 .................................... GATCCCGTGTAGCTGGCGAATGGGTGCAGT 11363 36 100.0 30 .................................... CAGTGCGGCGCTCATATGCCATTCGGGCCA 11297 36 100.0 30 .................................... GTTGAGCGCGTTGGTCTGCACATCCCGCAT 11231 36 100.0 30 .................................... CATGACCGCCCCCACCCTGCGCCCCGGCGA 11165 36 100.0 30 .................................... GGGCCTCTAAATTGACCACACGACGAGCTA 11099 36 100.0 30 .................................... TGTTGGTATGAGCATCGTCCTGCACGATGA 11033 36 100.0 30 .................................... CAGGTTCGCGCCGCCCAGGTTCGCGCCGCG 10967 36 100.0 30 .................................... TTCATTGATCTCGTTGAGCAGGTGGGCAAA 10901 36 100.0 30 .................................... TCCCTCAATCTTTGCAAAGCAGCAGCGCCT 10835 36 100.0 30 .................................... TTACGGTGGAGAGATCAACACGCCGCCTCT 10769 36 100.0 31 .................................... CTGAGCTGGAAATCACAAATCTGATCGAGGC 10702 36 100.0 30 .................................... TGTGCTGGACGGCTGGCAAAAGACCGCCGA 10636 36 100.0 30 .................................... CGCGTTCATGTACGCCGCGCGGCATTCCAT 10570 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 68 36 99.8 30 GTTCCGGCCAGTGCGCATATCCCAGTGATCTAGAAT # Left flank : GCCGACCCCCTGGCCCGCCTGCGCGAGCTCTACCGCGACCGCGACCCGCTGTACCGCGAGACCGCGCGCTACGTCATAGAGACCGGCCGGCCCACGGTGAACACGCTGGTCAACATGGCCATGATGCAGTTGGAGATGGCACCCGGCAAGCCAGACCTCAACACGTGAGGTACTTTCCGGCATATATCTGCCGCGCTGTGCCCAATGTGCGCCAGCGCCAGTTCCACAGGCACGATCAAGATACGGCAAATATGCATCTCACAGGCGTGCTGCAGTGCCTGCCGGTGGCGACCACACTGGCGCGCGTGGGAAAGTCGTGTATGTGAATGGGTCCGACAATGCAAGGTTCATCGCACAGCCTTTGGAAATTTCAGTAAATATATTTACAACCTATAATTTTAACAATCATACCCTCAATACCAACACCATCCCCAGGCGAATAAACCGCAAATATTTGAATCATTCAACTCCCTATTCACAGCTCGACATAGATCCAAACC # Right flank : GAGATCGCGCTAACCCCTTGATTTTTCAAGGGGTTTTGTGCTTCTAGGCACCAGAAAATAGGTTGCATGGTCAGAAAAGATCGAACTGATCGGGTGCTTTTTGGCCTGGTTGGCGACGCTGGCCATGGAAGGTGATGGCACGTTCGTACTGCTTGTCTGTGAATTGGAAGATATGGACTTTTCCGCCTGGCGGCAAGGCCGTTTCCACGTTGCGACACAGGGTGTCCACCTGTGTTTGGCTGGTACAGAACCGCATGTAGACGCTGAACTGGCTCATCTCGAAGCCCAAGTCCAGCAATGCGTTGCGAAAGCCCGTGGCCGCGCGCCGCTCAGACTTTTCCACCACGGGCAAATCGAACATCACCACCATCCACATGAGCCGGTATCCGGAAAGCATGCCTCTAACAGGTCGTTTGAATCAGTCCGACTCGGAACTTCCCGCCAAGGCCAAAGGCAAACCCTGTAGAGGTAAATCGAGTTTCGTGCGCTCGCCTAAGTAG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCCGGCCAGTGCGCATATCCCAGTGATCTAGAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCCGGCCAGTGCGCATATCCCAGTGATCTAGAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-1.20,-3.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,4.87 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //