Array 1 252945-254924 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYEI01000001.1 Salmonella enterica subsp. enterica serovar Albany strain BCW_2634 NODE_1_length_379509_cov_1.93999, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 252945 29 100.0 32 ............................. GATATGGGGCTTGATCTTGATTTATTTAATAC 253006 29 100.0 32 ............................. ACAAAAAAGACGAAACCAAAATCGACGCCGCG 253067 29 100.0 32 ............................. CCGTCATGGCGGATATTCGTCTGATTGGCGAC 253128 29 100.0 32 ............................. GGGATTGCGGGAATTAGTATTAAATCCGGCGT 253189 29 100.0 32 ............................. GAATTGCGGGAATTAATATTAAATCTGGCGTC 253250 29 100.0 32 ............................. ATAATCAGGTCGTTAATATTTTTGGTCGCCGC 253311 29 100.0 32 ............................. CCCACGCGGCACAGCTGGCAGAGGACGAAATG 253372 29 100.0 32 ............................. CGCTGGTGTACGACATCGCCGACATGATCAAA 253433 29 100.0 32 ............................. CGCCTCGCAAAACTGGTCGGGGTTTTTCCCCA 253494 29 100.0 32 ............................. TTGCGTCAGGTCGTCGTTTTTTGAGAACGCCA 253555 29 100.0 32 ............................. CTAAATAAAACCTGTAATTGCTCCCAATCGTA 253616 29 100.0 32 ............................. AGGGGCAGCTCCTGGTCGATGAGGTTCTTGAG 253677 29 100.0 32 ............................. CCGTCGGCCTGACAGCCACAGCAGTCAATACA 253738 29 96.6 32 ............................A TGCTGGTCACGCCCGGTTTAGCGGGTAAATTC 253799 29 100.0 32 ............................. TCACGGGGTCCGACGCGGATGTAATGAGTTAT 253860 29 100.0 32 ............................. GCGTTGGCGTCGCCCAACACCATCGCCGGGGC 253921 29 100.0 32 ............................. TTACTGGAACTGTCACTATACGTGGAACGTCG 253982 29 100.0 32 ............................. ACAACCGTCGTTTTCTCCACGACGTCGAGAAG 254043 29 100.0 32 ............................. ATCTCCGGCACGTGCGATAACGGGTCTGATTA 254104 29 100.0 32 ............................. CGACCCAGCGTTACGCGGTAATATTTCGCACC 254165 29 100.0 32 ............................. GACGTTGATTTACACGGCAAAGATACGGAATC 254226 29 100.0 32 ............................. GTACTGGCCTATTCCACATACAGTGGCACGCG 254287 29 100.0 32 ............................. TAGCTTAATCACGGTGCGTCCCTCCTCCGTTC 254348 29 96.6 32 ...C......................... ACCTGATTGAGGTAATCATGAAAAAAATATTA 254409 29 100.0 32 ............................. GCTGGAGCGCAACTGCCAGTGACTACAGAAGC 254470 29 96.6 32 ............T................ AGCACGCCACAGCGCGTAACTGTCGCAATAGA 254531 29 100.0 32 ............................. CGTCTTATCAGGATACCTGCAAACAGATGTTG 254592 29 100.0 32 ............................. ACCCCCCATTTACTGTTATTGTAGGGATAGCC 254653 29 100.0 32 ............................. CGAGCGCGGAATGATTTTTAACGCTGAGATGG 254714 29 100.0 32 ............................. GCTGGAATGGTACGGCTTACCAACTTCCCTGA 254775 29 100.0 32 ............................. TGTTTGCCATTCTCTCGCGTGCTGAGGGAGAC 254836 29 100.0 32 ............................. ATTTGCGTCAGACTACCGACAGGGGCTGGTAT 254897 28 93.1 0 .......................-.G... | ========== ====== ====== ====== ============================= ================================ ================== 33 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTACAGCCTATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCTCTATCAATTTTACGGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGATGATAAAAAATAGTTTATAAACAACAATATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCATGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 271482-274380 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYEI01000001.1 Salmonella enterica subsp. enterica serovar Albany strain BCW_2634 NODE_1_length_379509_cov_1.93999, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 271482 29 100.0 32 ............................. CGAACACTGGCTTAAGTGCCATTGCTGGAAGT 271543 29 100.0 32 ............................. CGTCATCATACCAACTGCTGGTCGATACGATT 271604 29 100.0 32 ............................. ATAACAGCGGCCACAATATAAACAATGGTTAA 271665 29 100.0 32 ............................. CATTCTGACTAACGCCACCACAATTGCCGCTA 271726 29 100.0 32 ............................. ATGTCAGCGCAGGAGATGGCGGCGACTGCTGG 271787 29 100.0 32 ............................. CGCCGCCCCCATCACAGCACCCCGGCCAGCTT 271848 29 100.0 32 ............................. GTCTTGAGCAGTGGGCGCAAGAGTCTGGTTAT 271909 29 100.0 32 ............................. GAATCGCGGGAATTAATATTAAATCTGGCGTC 271970 29 100.0 32 ............................. CGGGCATTTGCCCGCTTTTCATTACAGTGATT 272031 29 100.0 32 ............................. TTCTGGCAATGGTCTTATTTTTTGAGGTTTAG 272092 29 100.0 32 ............................. GTCACGTGCGGTTATCCTGCAATTTCTGACGA 272153 29 100.0 32 ............................. GTTTACAGCCTGAGCAATGCCGGAATGAATGA 272214 29 100.0 32 ............................. TATTTCAATATTCATTCATTGCAGGCGTAGGA 272275 29 100.0 32 ............................. ACGCGAGCGCCGGTAGTCAGCACATCATTAAA 272336 29 100.0 32 ............................. CATAACCATAACCAAATTGGGTTAATGGCGCC 272397 29 100.0 32 ............................. CCAGCCTCTTCAACGAGTTCGAGAAACGCGGT 272458 29 100.0 32 ............................. TCTGGTCGTCCGAGGCTGAGGCCGAGTGGCTG 272519 29 100.0 32 ............................. CGCACCTGCCGGGACATGACCCTGCCGGAGCT 272580 29 100.0 32 ............................. GCGTTTAAACGCTTTTTTGATATCGGCTTCAG 272641 29 100.0 32 ............................. TTAGAGTTGAAATTGATGGCATTGAACTTGGC 272702 29 100.0 32 ............................. TACCAAAGATACCGCCGCGCTGCTTTCTGGTA 272763 29 100.0 32 ............................. GCATTGCCTGGCTGAGTCCGTCGCTAACTGCG 272824 29 100.0 32 ............................. TAGCTTCTTTGTTCGTGCGGGGCGGATTATGC 272885 29 100.0 32 ............................. CATAATTTACGCGGCCCTTTTTTGGTCACCCA 272946 29 100.0 32 ............................. CGAATAAACAGGCCTGTAACGCGCTCCAGCGT 273007 29 100.0 32 ............................. GCTCCGCCTTGAAAATAACATCTGACATTGTG 273068 29 100.0 32 ............................. TGCCGGGGTTCTGCAGTCTCTATTTTCCTCGC 273129 29 100.0 32 ............................. GAGCTGATAGAGGCCAACCCGGACGCAAAAAT 273190 29 100.0 32 ............................. TGCACATACATCCTCACTTACTGGGTCTGACA 273251 29 100.0 32 ............................. AGCTGTTCGGCGTGGCGGCGTAGCGCCTCGGG 273312 29 100.0 32 ............................. CTGCTGATGTAATGGCCGACGCAGATGCTGTG 273373 29 100.0 32 ............................. AAAGTTGACACAATAGCGAAATCAATTACTGA 273434 29 100.0 33 ............................. TTGTTGCAGGCGGGAGAACGCAGCGCGTACCCC 273496 29 100.0 32 ............................. GCGACCTGCTCGACAGCATTCAGTTTGTTGTT 273557 29 100.0 32 ............................. TGATCCAGCCACTTAAACAAAATGATCCACAT 273618 29 100.0 32 ............................. GGCCACACCGACAACCGCAACGGATACAAACA 273679 29 100.0 32 ............................. CAGCCGGAACGACAGCAGCGACAGCGACGTGG 273740 29 100.0 32 ............................. ATATTATAAAAAAAATAATAACCTCTCAGAAA 273801 29 100.0 32 ............................. GTTTGGTTCATCCTGAACGGCGTTCGTGGGGA 273862 29 100.0 32 ............................. CGCCCGCATGATGGCGCGGTTACTTAATGTCA 273923 29 100.0 33 ............................. CGGTATGCTATTGACAGGAGTGAGATTTTAGAT 273985 29 100.0 32 ............................. AATCTTCAGAGGACTCAGATCCTGATTACGTT 274046 29 96.6 32 ............T................ TTGATTACAGTAAAATTTACGTTTATTCAGTC 274107 29 100.0 32 ............................. AAATCTCCACCGTGGATATTTCGGTTATTGGT 274168 29 100.0 32 ............................. ATGTGCGCATTATTGCTAACCATAGAGACTCA 274229 29 100.0 32 ............................. ATATTTTGGCAACTCGTCGTACATTATCGCCA 274290 29 100.0 32 ............................. TCGCACAACGCCTGGATATCCGCCCATCGGCC 274351 29 100.0 0 ............................. | A [274378] ========== ====== ====== ====== ============================= ================================= ================== 48 29 99.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGCACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTAGAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCTCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //