Array 1 789-39 **** Predicted by CRISPRDetect 2.4 *** >NZ_RYEQ01000009.1 Moraxella catarrhalis strain 173P31B1 m173P31B1.contig.8_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 788 28 100.0 32 ............................ ACTGATCCTCCCAGCGAAACTCAAAGCGAGCC 728 28 100.0 32 ............................ ATAGTGCCTGTGGGTTGACAAATCTTTGCCAA 668 28 100.0 32 ............................ TTGATGTACTAAAGTCGTGTTAATAACATAAT 608 28 100.0 32 ............................ TTACCTGATGATACCATTTCCAATTTAACTTC 548 28 100.0 32 ............................ CTGCCACCTCACACAGTGGCAGAGTTTACCCA 488 28 100.0 32 ............................ AAGCATTAATAAAATTCCAAGCATTGAAAGTG 428 28 100.0 32 ............................ GATGTCGTGCCAGATACCCAGTCTATCCAGGC 368 28 100.0 33 ............................ TTACACTTGTAATCGTCGAAATGCTTCTTGTGT 307 28 100.0 32 ............................ ACCACAAAAGTAAGGTGGGGATTTACTGCGAT 247 28 100.0 32 ............................ GATGTCGTGCCAGATACCCAGTCTATCCAGGC 187 28 100.0 32 ............................ GATGTCGTGCCAGATACCCAGTCTATCCAGGC 127 28 100.0 33 ............................ TTACACTTGTAATCGTCGAAATGCTTCTTGTGT 66 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 13 28 100.0 32 CTTCACGACCGCACAGGTCGCTTAGAAA # Left flank : TGCCTGTGCCAAGTAAAATGACCGTCGTGTTGGCGATCGGAATATTATAATAGTGGTTTTGGTATTTCGTTTCGGTCAGGTATAAGATACGCCCATCTTTTTGCATGACTCGGCAATGCTCAAGATAAAATAAATTCGCCCGTTTGGAGTGTAAAATTGCTTTCAAATCGGTCGGTTTGAGCGTATTCATAATAATACAAATCCATGTTTAATGATTCAATTTTATCCTAACAATTTTCAACATCATTTAATATGATTTTATTGGATTATAAACTAAAAATAAATTTATACCAATCATTTTTTAATTGTATTTAGCGATTAAAATGTTTTAAGATAACCCAACCAGAAGATGGAAAAATAACTGATTGACCCTTTATTTTTTTACTATTTAAAAACTTGAATATTTTCAATAAGTTATAACATGAAGATTTTTGATTGGGTTTTTGACAAATTTTATCATAATGACTTGTTATTTCTTATTATTTTGGTTTATACTAACT # Right flank : AACCACAAAAGTAAGGTGGGGATTTACTGCGATCTTCAC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACGACCGCACAGGTCGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTTCACGACCGCACAGGTCGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.10,-7.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [35.0-81.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 40-1150 **** Predicted by CRISPRDetect 2.4 *** >NZ_RYEQ01000015.1 Moraxella catarrhalis strain 173P31B1 m173P31B1.contig.14_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 40 28 100.0 32 ............................ ACCACAAAAGTAAGGTGGGGATTTACTGCGAT 100 28 100.0 32 ............................ TAACAACCCCAGTGGGCGCAAACTTTTAAGGA 160 28 100.0 32 ............................ ACAATACCGCAGAAGGCATTTCTTTTGATAAA 220 28 100.0 32 ............................ TACCTGAAATCAGACACGATCAAATTAAATTA 280 28 100.0 32 ............................ CCAAAGACACCACACATCAGCTACTGCAAACC 340 28 100.0 32 ............................ ATAACAGCAACAGGTACAACCGCCGATAAGAT 400 28 100.0 32 ............................ TTGCAGGTGCTGAGAGCATTAGCGATAACTTG 460 28 100.0 32 ............................ GTTGTTAAGCTTTGATTAAGTGTGTTAATACT 520 28 100.0 32 ............................ TTGATTAGTTGAGTTTATATTTGCCCAATTGG 580 28 100.0 33 ............................ ATTCATCTCATCAGCCATCATTTCGCATTCAGG 641 28 100.0 32 ............................ GCTTTGGCGGTTTTATTCGGCTCACTTGGCGT 701 28 100.0 32 ............................ TTGCAGGTGCTGAGAGCATTAGCGATAACTTG 761 28 100.0 32 ............................ GTTGTTAAGCTTTGATTAAGTGTGTTAATACT 821 28 100.0 32 ............................ TTGATTAGTTGAGTTTATATTTGCCCAATTGG 881 28 100.0 33 ............................ ATTCATCTCATCAGCCATCATTTCGCATTCAGG 942 28 100.0 32 ............................ GCTTTGGCGGTTTTATTCGGCTCACTTGGCGT 1002 28 100.0 33 ............................ AACCGCTTTAAATGCAACAGATAAGGCATCTGT 1063 28 96.4 32 ...................A........ TGGGGAAGTTAGGCATTTAAAATGGCAGGATA 1123 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 19 28 99.8 32 CTTCACGACCGCACAGGTCGCTTAGAAA # Left flank : TAGAAATTACACTTGTAATCGTCGAAATGCTTCTTGTGTC # Right flank : ATTTTGTTCTATGGCTACGCTGATTATTTAAAATTTTTGTGCCAATCCCTTGAAAATTTTATCCTTAACCATTATGAAGATGGGGAATTTATATTAACTTTTTTGGGGCAATTTATGACCGAGCAAACCACCGAACAAACCACTATGGAAGAGATTACAGCTGAGACGACAACCGAGCAAGTCGAAGCACTTCATAGCCAAATCCAAGCGCTAGAAAATGAAGTCAAAGAAGCCAAAGAGACTGCCGCGCGCGCCAATGCCGAAAGCTATAATGCCCAACGCCGCATGGAACAAGAAACCGACAAAGCCAAAAAATTTGCACTACAAAAGTTTGCCAAAGAGCTTTTGGAGGTGGTTGACAACCTAGAGCGTGCCATTAAAGATGCTGAAGAGACAGGTGCAGATGACGCATCACTTGAAGGTATTCGCCTAACACATAAAGTACTGCTTAGCGTTCTTGAAAAAAATGGCGTCGTGGCCGTGGGTAATGTCGGTGATAC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACGACCGCACAGGTCGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTTCACGACCGCACAGGTCGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.40,-7.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0.27 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //