Array 1 105456-104841 **** Predicted by CRISPRDetect 2.4 *** >NZ_PJLK01000019.1 Akkermansia muciniphila strain GP09 scaf-19, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ================================== ================== 105455 31 100.0 34 ............................... CGGGTCTTCGTCATCGTCCAGCCCCCGGTCCGTC 105390 31 100.0 34 ............................... TCCTTTCCGTCGATGATAGCCTTTAATTCACCAA 105325 31 100.0 34 ............................... TGTGTCCTTCTCATCGTCCCCCTCTCCCGTGTCC 105260 31 100.0 34 ............................... CTGAAACAGGCGCGGGACGATAAAAACATCCCTG 105195 31 100.0 34 ............................... GATGTATTGGAGGTGGGCGTATCCATAAAACATG 105130 31 100.0 33 ............................... AGCAGGGATGGGCGTGTGTCCGATGTGCTGGAG 105066 31 100.0 34 ............................... GAGTTTGAAATGGATTATCGCGGCGACTACAACT 105001 31 100.0 34 ............................... CGTGCTTGCCGTGGGGAGGGCGCAAAAAACGGCT 104936 31 100.0 34 ............................... ACGTTGATTTCCCGGTCTGTCAACTACGACGGGA 104871 31 87.1 0 .........A......C............GT | ========== ====== ====== ====== =============================== ================================== ================== 10 31 98.7 34 GTCGCACCCTCACGGGTGCGTGAATTGAAAC # Left flank : GAGAGGCTGGATAGCCAGACGTCTTTATCGGGAGATGGATTGGACGCTCCTGGATGACCGCGCTCCGGAAGATTGGACGATTGGACGGGAGGTGTTGGCCAGGGTTCCGGCAACATTGTGCCGCATTGATGAGCCATGGCGCAAACGTTCCCCGTGGAGTGTATGGACGGCCTGGTGCTGGCCCAGCCGCACGGTAAGCGCCGAGAGTTACGCGGCCAGGTTTGCCGTGGTGATTACCGGCAGCCCCCGCATGCCCGATCAACCCGCCAGCGAGCGGGCCAGGGTGATGCACCTGCTGGCCGACGCCAGGGAGAGGATGCTCCGGGAGGGTGTGGTCAGGGAGGACGACGAGACGGTGGATTGGGGTGACCTGCTGGCCGCTTGTAAGGGGGAGGCAGAGTCGATGCAGACCCCCTGCACGGAGCTGGCAGACAGACAAGTTATATAAGATACTTGTCGTAGTTCTATCAGATGTCTTGGCGCGTTACACAGTAAACCCG # Right flank : TTTTATGTATGTTTGACATATTTAAATACGAATCGTTGTTTTATTAAGGGAGGGAGATATATTGAAATAAGGGTATTTGTTGCTGAAGAATGAAAGATGGATTTTTGTGTTTTTTGTTGAATGCAATATTTTGACGGAGGAAGTTGGTTTTTGGCTGATAGAGGAGAAATGACGGGAAGTATTATTGGACGAATATGAAAAGATATTGTCTGGTTTCCGGGTTATGTTTGTGCTTGTTCATGGGGATATTTTCATGTATTCCGGAAGCTCCGGAGCATAAGACGGAAAAAGATGCCTCAGCCATTGTTCTGGATGAGGATTCGGATATAATCTGGAGGAATTTTTCTTTGGGCCGCGTTTCATTCGATGATAAGGCTCCGCATAGTAAAGGTTCCCGCATTTTTCACCGATTGATTCCAGATACGGAGGTTTATATCCATCAGTTGTCCCGTATTGTTCTCCATACGTTGTATGAGAGTCCTGAAGAATGTATTGTTCCT # Questionable array : NO Score: 9.20 # Score Detail : 1:0, 2:3, 3:3, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCTCACGGGTGCGTGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCCTCACGGGTGCGTGGATTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.60,-6.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,10.15 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 139193-138706 **** Predicted by CRISPRDetect 2.4 *** >NZ_PJLK01000019.1 Akkermansia muciniphila strain GP09 scaf-19, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== =================================== ================== 139192 31 100.0 34 ............................... CTGGCACAACGACGCCTCCCTTGTCGTCAAGGAC 139127 31 100.0 35 ............................... CGTAATGCCCCCGTCGCTGCTCTGGGTGGTGGTCT 139061 31 100.0 35 ............................... TTTTTATTCTTTGTGCCTGATGCAGATTCCTCCCC 138995 31 100.0 34 ............................... CTGGGCTTGGTCAATGGATTCCAGCAGCGCTTCC 138930 31 100.0 34 ............................... TTCAATTCCGCGATACGTGTGAGCCTTTCGTTTT 138865 31 100.0 34 ............................... ATTTACATTTACCGTTCCGCTCGTAACGACAAAA 138800 31 100.0 33 ............................... TATATTCGGCCCATGCTTCGGCAATGGTTTCTT 138736 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== =================================== ================== 8 31 100.0 34 GTCGCACCCTCACGGGTGCGTGAATTGAAAC # Left flank : ACTGCCCTGTAAGAGCGAGGCAAGCTTCTTCTATTGAGCCTTAAACAGGAACCGTCCGTAAGGGCGGCTCCTGTTGCATGGCGGCGCAAGAGGAAGACAGGTCAGTTGACTGCCGTTAGGGTGGCAGCAAGGCATGTATATAGATCCGGATATTCCTGTTTTCCGGTAGGTGAATTACTGGTTTTGTGAAGGAATGAGGAAGATGTTTCTGGACGCAGTAAAAAAGAACGGTTAGCATCAATGAGCCAAATTGAGTGCAAGCTGGCTCGGACGTGAAGTAACTGAGGTTTTCTAAGATGATGCCACATCGGATGCTGCGCTTGCGCCAACCTCAAGCTCACAGAAAATTGCCGGGAATCCGGCGCATGCTGTAAGCGATTGAGAAATGTAGCTTGACAGAAAAATTCCCTTTGATCAGGCCTGGCCGCATCCGGTTCTTGCATCAGGTTGGCGCAAGACCTTTGTTGCATGTTTGATACTCAAACCGTATTCGTCAGGCC # Right flank : AAGGTATGTTCCATGCGACGCACAGTTGAGGAATGACAGGAGAGTTGATATAAGTTGAATCAGGGTTGAAATCCGTTGGAACCCTAGAAAACACGGGAGTTAAGTAGGAACAGGCCAGATACGAGCTATCTTATAAAAGTCGGAGCTAAAAAGAGGGCAGATGACAGGTATCTGATATAAGTACACAAGCTATGCAGGGATGCTGCACAAGAGCTGCAAAGGGTAGGTGATAGAGAAAACGACAAGGTAAAAAATCATGATAGGATGTCCCGCATGTGTACACCTGCATATTGCATCCCCTTGTATGGCTCCATGACAGTTATCTCGCCCGAAGACCGAAAGAAAAAGAATCCGCAAATTTATCATCTCCATGATACCGCTGTCGTGTTGATGTGGACAACTCGTGAAAGAAGTAAGACGACATGCTGGGTGCGGGATGTACTCGACAATGTGTGGATTGTGATCAGGAACGAAAGAGAAGATGATTGAAAAGAAAAAGG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCTCACGGGTGCGTGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCCTCACGGGTGCGTGGATTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.60,-6.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [58.3-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.74 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 268580-268279 **** Predicted by CRISPRDetect 2.4 *** >NZ_PJLK01000018.1 Akkermansia muciniphila strain GP09 scaf-18, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================= ================== 268579 37 100.0 29 ..................................... TAAATTCCCTGATCCGCTCATGCTGAACA 268513 37 100.0 29 ..................................... GAAAAGCTTTCACAGTTTGCGGGCCACAG 268447 37 100.0 29 ..................................... AAGCAATTTTTATACGGTCAATCATCAGG 268381 37 97.3 29 ....................................T TTCGGCGCGCTGGACAAGGGGTTCAATCG 268315 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ============================= ================== 5 37 99.5 29 ATTGTACTGTGCCTTATTTTGGATTCAAGGCAAAACA # Left flank : CTGTCATGTACCGGGATAAACAGCTGCCGTTGAAAGCGGCGGTAGAGGCCGTTTGCCGCAGTTTCCGCAAAGCAGTTCTTGCCGGACAATCCGGACCGTATGAACCATGGCTTATGACAACTATAAAATGGGCTGGCTAGTTGTGTTCTTTGATCTTCCCACAACCACGCCGGAAGATAAAAAAAACTATCAATATTTCCGTAAGGCTCTTTTAGAAGACGGCTATACGATGATTCAGTATAGCGTCTATGCCCGCGCGTGCGTTACTCAGGAAAGAATGGCTACCCACTCCCGCAGAATCCAGAAAATGATACCGCCTGATGGTTCTGTCCGCTGTCTTTTCGTTACGAATATCCAGTGGGATAAGATGTTCGTTTTTCATGGCAGGTCTTGTCCCCGACAGGAGGTTTCCCTGCCTCAGCAGATGCTCCTCTGGTAAAAATATCGGACGCCGTATTTTTTTATAAGTCGCTGAACATAAAAATAAGGCACAGTATCTA # Right flank : AATGCGCCTCCGGTCTGATGGCGCAGGGGATTGCTCCGCCTTTGGCCACGCAATTCCAGACGGATTTTTGTCAGTCTTCCTTTAACGGAGCGGGAGAAACAAAGCTGTGCGTCCAGAACATGGCGCCGGTTGCGGAGGTGATGCCCTCCATATTAAGATAGCGGGCCAGCAGCAGGGAGGGGGAGGAGTGTCCCATCTCCTTCTGGAGAAGGTTTTGATTGCAGAAATGGGCCAGGTGGTAGGAGGCGTAGGTATGCCTCAGCACGTCCTGAACCCATCCGCTTTTTTTCAGGATGCCGGACCGGCGCCTTACTTCCCTCCATTTCTTTTCCCAGTTGGGCGGGCAGACGGAACGGGCGGGGGAACCGGCGGAAGACATCCGGCTGAGGATGGAACCCAGCACGGGAAGGATGGAAACATGGCGGCTCCCTCCCGTTTTGGTATGGGTGGGCGCCAGTGAAACTAGGCCGGATTTCAGATTGATATGCTTCCACGTCAGC # Questionable array : NO Score: 6.03 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGTACTGTGCCTTATTTTGGATTCAAGGCAAAACA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.30,-5.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [38.3-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.68 Confidence: LOW] # Array family : NA // Array 2 339249-336657 **** Predicted by CRISPRDetect 2.4 *** >NZ_PJLK01000018.1 Akkermansia muciniphila strain GP09 scaf-18, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 339248 33 100.0 35 ................................. CGGCCATAAACGTATTGCCGCCCTCAAAAACGTTA 339180 33 100.0 34 ................................. TCATCAGTGCCAGCAACGATGAAACCCCCCTCAT 339113 33 100.0 34 ................................. AATGATACTGTGCGCGTGGAAACCGGGAAAATCG 339046 33 100.0 34 ................................. CCGGTCAGTCCGGGCTTGTCACGCCAGTAGTCCG 338979 33 100.0 35 ................................. CGGCTTCATCGACGATAATCGGAACCTTGAAGCCG 338911 33 100.0 36 ................................. TACAATGCGGTATCTTACAGCAATCCGGTGGTATTT 338842 33 100.0 35 ................................. GTTTTTTTTGTTTGGTATATCTTTTTGCTTGGTTA 338774 33 100.0 34 ................................. TTTTTCTCTGACAAAATGAGGTCGGAGAACGGCT 338707 33 100.0 35 ................................. TGTGTTCAAACCTCGTTGCTTTACCCAAGCCTAAT 338639 33 100.0 35 ................................. TCCTTACGTTGTTTTACGAGGTATCATCCTCTCAG 338571 33 100.0 35 ................................. AACGTCCAGTTCATCGTAACAATCCTGTTGTGCTA 338503 33 100.0 34 ................................. TGCATGGCGATCTTCATTGCTTCCAAGCGGGAAA 338436 33 100.0 34 ................................. ACGAACCATAGCAAATCTTCCATTGACGATTGGA 338369 33 100.0 34 ................................. CTTTTCTAATTTGCAACGATTGCAAATTTTTTTC 338302 33 100.0 34 ................................. TTTTTCTGCGCCTGCGCCGCCCGCTGGACTTCCA 338235 33 100.0 34 ................................. ATCGTCTATGCCGTCTTTATAGGAGGCGGCGACT 338168 33 100.0 34 ................................. CTTTGAAAGCGCGCTCTATGCGCTGCCCAGGAAA 338101 33 100.0 34 ................................. CGGTCATCCCTCGCAGCATCATCCTGCATTTCTG 338034 33 100.0 35 ................................. GCCGCCTCCTTCCTGTTCTTCTCCTTCCGGGTATT 337966 33 100.0 34 ................................. CCGTTGGGCGGGTAACAATCGCAATATCCTATTA 337899 33 100.0 35 ................................. CTTTTGCCAGTACGGAGGAATGCAAGGCCCTTCTT 337831 33 100.0 34 ................................. AATAACTCTACACGATATTGGAGGGGTAGCTCGT 337764 33 100.0 34 ................................. CGTTTTTCCCCTCGAAAAGTATTTACAGTTTTCA 337697 33 100.0 34 ................................. CACATACTTGCGCCCCGCCCGGACAGCTCCAAGC 337630 33 100.0 34 ................................. ATAAACTTTTGTTTTTTGGATGTACAGCAGCACG 337563 33 100.0 34 ................................. TTACTCTTCCGCAAAATTGTACCAGCGCATCTAC 337496 33 100.0 34 ................................. CGGAGAGTGGGCACGGCTAAGGCCCGTGAAATTG 337429 33 100.0 34 ................................. TCCATTGCCGCCCTGCATGCTTCCCCGCATTCTT 337362 33 100.0 35 ................................. TTAGTTGCCGCCAGGGCCTCTTCCGTCAGCCAGCC 337294 33 100.0 34 ................................. AATAAACCCGTACAGTTCCAGCGTGCCGGAAGGG 337227 33 100.0 35 ................................. CTCAGCATTGCTAATCCTGATAACGTCAACCAGAA 337159 33 100.0 34 ................................. TCCCGGTGCTGCCCGGTTCATGGCTGCCACCCTT 337092 33 100.0 35 ................................. ACACGTTTGCAGGGCCTGCCGGGCAATGGAATTAT 337024 33 100.0 34 ................................. GACCTCAAAAGCGGCCAAATCCGCAACTACTGGG 336957 33 100.0 34 ................................. CGCCGAAAACGTCCCGCAAAAACAGCTCGCAGAG 336890 33 97.0 33 ............G.................... GACCATATCCCCCCAAGGGAATTTTAGAAAGGA 336824 33 100.0 35 ................................. CACAGCCTCCGGGCGACCGCCGTGACCGTCCTGCG 336756 33 100.0 34 ................................. TCCATGATGTCCCGGTCGGAAAATCCAAGGTCGC 336689 33 93.9 0 .....................A....C...... | ========== ====== ====== ====== ================================= ==================================== ================== 39 33 99.8 34 GTCGCACTCCGCAAGGAGTGCGTGGATTGAAAC # Left flank : CTGTTGTCATGTATATTCTCATTACGTATGATGTAGCTACGGATGACAAGGCCGGGCAGCGGCGGTTGCGGCAAGTTGCCCGAGCCTGTGAAAATGTCGGACAGAGAGTGCAGAATTCCGTATTTGAATGTGAATTGCCTCCTGCTCAATTGGTTGACATTAGGAACAAGCTGCTTAAGATTATTGATAGCGAGAGTGACAGCCTCAGAATTTATCATATGGGGTCCAATTGGCATCATAAAATAGAACAATTGGGTAAGGAGAAAAGCTATGACATCTCCGGTCCCTTGATTATTTAAAGACTGTTGAACATGGCCTGTGCGCCAACCTCAAGCTCACACGAATTCCCCGGCAGGTCGGCGATTGGTGTAATGCATTGGGAATAGAAGATTGACAGATAAATACTCAGAAAGAGCAACCGTGCAATGACGGTCTTTTTAGGGAGGTTGGCGCAAAGTATGATTTGCTCTGTTGAGTAGCAATGTATAAGGTCGGGCGCA # Right flank : ATGACGAGTGCAAGCTTCGAGAAGATGCCACCCGCCGTACTCTCCAGGGAGTACGTAACTTATCTGGAAAAGAAAAAGCTCTCCGAACTTGTTTGGTCTAGAGAGCTTTTTTTGTTCCATCATCTTGTTAAGTTGTCAGGAAGAGGGGTGATTATTGAGATTGAGTTCTGCCGGGGGGAGGGACTGGAGCAGAGCCAAGATGGGGTCCTGCGGTTCGGCGCCCATTTCCCGCTGGCGTTTGAATTCCTCCTCTTCCTGCTGCAGGGCTGCCAGTTTGGTGTCTTCCACCAGCGCTTTGAATTTGTCCGCCTGAGAGTATTCTCCGTCCTCGTCCCGGAAAACGCGGGCCAACCAGCGGCGTTTTTCTTCCGTACTGAGCAGGGGATTTTTCATGTGCCGGGGAATGTATTTTTGTCCAGCAGGTTTCCGGCAAGCTGTTCTCCATCCGCAGTGGGCCGGTAAACATAAGGGCGACCGTCTCCAATACGGTTGACATATCC # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCCGCAAGGAGTGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCTCTCCGCAAGGAGGGCGTGGATTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.90,-7.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,10.15 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 3 348016-347720 **** Predicted by CRISPRDetect 2.4 *** >NZ_PJLK01000018.1 Akkermansia muciniphila strain GP09 scaf-18, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ======================================= ================== 348015 31 100.0 34 ............................... TTTTAAATCAGTTCCGGTCTAAAATCGGCGTCAT 347950 31 100.0 34 ............................... GTCCTGTCAAAATCCGAATTTGCAGAACATTCCC 347885 31 100.0 39 ............................... ATGGGTGGACTGCATCAGGCTTCTTGGAGACGACATGGA 347815 31 100.0 34 ............................... CGGGTGGTCGGTCCGCGTGGCTCCCTTTCCGGCT 347750 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== ======================================= ================== 5 31 100.0 36 GTCGCACTCTCATGAGTGCGTGGATTTAGAT # Left flank : GCCGTGAAAATTCCGTTGATGGCCTGTCTGGCCTCCGCTGTCTCCGCGGCGTTGGTATGGCTGTTGAGCCTGAACAGGTGGACGCGCAAAAGCATCATGTAAACCGCGGATATTTTCCGCAGGGCGCTTCGGGACCACGGCTATCCCGGGGCGCCTCTTCTTTTGTGGAAAACAAAATAAAACGGTTTCCGGGGAGAGGCCTACAAAATTCTGGACGGGAAAGAGGGAACAGGTTAGGATGTTTCCGCATCGTGCACAGGCTCTGGTTGCCGGAGATGCGGGCTTTTTAACGCATGAAAAGCTCCTCTCCCGGTCTTCCTTCCGCCGACCCCAAGCTCACAGGAAATTTCCGGAATACCGGCGATTTTCGTAATCCGTTGGGGTTCTGATCTTGACAACTATCATCTCTTTTTACGACCTGGAATCTTTGTACCTCCCATGGGAGGTTGGCGCAAAACGCCCGTTGCACTGTTGGTAATCAGTGCCATAGACGCCCAGGA # Right flank : GTCGTAGATTGAACGACCTAATATCCCTAGAATGAGAAGGAGCAGTTGGCTATAACGCTCATTAAAAACACCCTTCATTTTTAGCGAAGGGTGTTTTGACATTCGTGAAAAGAAACAGCTCAGAAGCCTTCAATCATTTCCGGGGTTAATCCCGGTAGATCATATTTCTTTACAATATTTCCATCCTCGGAGATTTCAATGGAGTGGTGGACTTTCGCAGAAGAGTATTGACCACTTTTACAGTTATGCTCCCACCAAATGACTTTTTGAATAGACATGCTGCCTTCCGGTCGAGCAGAGGAGGCGTCTCCTTCAAACATCTGAGGAAGCACTTGTTTGAAAATGGAGGCATCTTCATCCGAGAAGCCTGTGAGTTCTGCCAGCTGTGGATTGATTGCTCCAAAGAAGACATAGGTTCCCTTGTCCACCCTGTGCTTCATGCCCATGGTGTCGGAAGATTTTTTGCTGCCGTCTCCGTCATTGCTGACACTTTTCGTAAT # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTCATGAGTGCGTGGATTTAGAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.61%AT] # Reference repeat match prediction: R [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.70,-3.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [55.0-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.87 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //