Array 1 135706-134457 **** Predicted by CRISPRDetect 2.4 *** >NZ_AJMP01000054.1 Pseudoalteromonas flavipulchra JG1 contig_54, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 135705 29 100.0 32 ............................. TTAAGGCCAGAACTTTGATCGACTCAATTAAA 135644 29 100.0 32 ............................. CCGACTACATGCGCATGCAACTGGGGTTACAA 135583 29 100.0 32 ............................. ATATTAATGAGGCTACTGGCACTCAAATGTGC 135522 29 100.0 32 ............................. TAATTGCCAGTTCTCGAGCGCCTCGACGTGAC 135461 29 100.0 32 ............................. TTGGCGATATTGATCACACAGGCACACAAATC 135400 29 100.0 32 ............................. CCAACAAGTAACCGACGCGAACGCGAAGACCT 135339 29 100.0 32 ............................. GTGCTATTCACACCGCTGCGGTTGATATTGAC 135278 29 100.0 32 ............................. GTTGCTCAATTCCCGTTGATTTATATGCGTTA 135217 29 100.0 32 ............................. TTAGGTTAGATTGGCAACGTGATGATGATATT 135156 29 100.0 32 ............................. CTTAGCTGAATGCCTTGGGAAGTCCTTAGGTG 135095 29 100.0 32 ............................. GTGTTTAGGTTTGATGACCCCATTTGGCAAAC 135034 29 100.0 32 ............................. TCAATTTTGCGCTGGGGCTTATTCGTGCTCTA 134973 29 100.0 32 ............................. TCAGTTAACTCAGCAGTTCGCTTCCCTTGGGG 134912 29 100.0 32 ............................. TAACTGCCAATGTATGGATTAACGAGCATCAA 134851 29 100.0 32 ............................. TAGAATCATTACTGTCGAAAAACGGTTTACAT 134790 29 100.0 32 ............................. TGAACAAACGACGCGAACCGAGACATCTTCGA 134729 29 100.0 32 ............................. GCACTTTAATTTCACATGTATTCCACACAATT 134668 29 100.0 32 ............................. CCATGAATGCCGCCGCTCAAATTGGTGAGCAG 134607 29 96.6 32 ............T................ GCCTCGTGATTTCAATTCCGCAACATTCAATC 134546 29 96.6 32 ............T................ GGTTGCCACCATCGAGGATTTCTACCAATCCC 134485 29 93.1 0 ..........................T.T | ========== ====== ====== ====== ============================= ================================ ================== 21 29 99.3 32 GTGTTCCCCGTACGCACGGGGCTAAACCG # Left flank : ATAGGCGACGAGGGCCATCGCAGCGGAGGGTCACTATGAGTATGTGCATGGTTGTTACTGAGGCGGTGCCACCGAGGTTAAGAGGTCGTCTGGCGGTGTGGCTGCTGGAGATCCGCGCCGGTGTGTATGTAGGTGATGTGAGCAAGCGCATTCGTGAAATGATCTGGTTTCAGGTCAGTGAGCTGGCGGAAGACGGCAATGCGGTTATGGCTTGGGCAACTAATACCGAGTCGGGTTTTGATTTTATCACTTACGGCGAAAACGCCAGAATGCCTGTCGATTTTCAGGGCCTGAGATTGGTGAAGTATACGCCCAGAGCAAATGATAATCCGGGAGCTGGTTAGCGAACTCCCCTCGTTTTTTTAATTCGATTTAATGCTCTTTAACAAGTTGGTGATTAAGATTTATACCTCATAATGAGAGGTGCTTTTGTACCGAAAATCTTCGGTAACTTTTACTAGATGATTTTTCTTTATTAAAAACAAGTATATAATTTTAGA # Right flank : GAGCGACTCAGGTCTGGACCATGTGCTGGAATTCGTCCGTGAAGCAGCACCAGATGCTCACCTCATTGAGCGGTGAAACAGCGGCGATTCTAGGTCCGCCAGTAATCTCGGGATTAAGTTATAGCCATCATTGTTAGCTAGTTATTTATCCACATGACCTAAATCACGCTCAGGATCTAACAAATCTCTCACCCTTCTTTTGAGCACTTTGGCTTCAGGAAAACCTTCATCCGCCTTTCGGCACCAAATTAACGTATTGTTATAGTAAATTTTGAATACGCCTTTACTTGCTGGCACTAACGCGACTTGTTGTAAATCGTCAGAGAAAGTTGAAAGTAACTCTTGTGCAAGCCAAGTTGCTCGCAACATCCATTGGCAAAGTACGCAGTAATGGATAGTGATGGTCGGTTTTTGCATGAATTTACGTTTTTTTGAAGGCTGTGATGGGATTCTAGCACTGTGATTTATCATATGGCTAGCTTGAAAAAACGGGGGTCGCC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGTACGCACGGGGCTAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGTACGCACGGGGCTAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-10.30,-9.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-80.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.18 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 148540-146302 **** Predicted by CRISPRDetect 2.4 *** >NZ_AJMP01000054.1 Pseudoalteromonas flavipulchra JG1 contig_54, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================================================== ================== 148539 29 93.1 32 .............G.............G. TACTTGGTTTGATTGGGGAGCTGGGATTATTA 148478 29 93.1 32 .............G.............G. TGACTTGCCAGCCTCTTTCGCTTCATGCTTAT 148417 29 93.1 32 .............G.............G. CCATAGACGTTTATTTTACACGCATTGTGTAA 148356 29 93.1 32 .............G.............G. TAAGCACCTGGCTAAAGCTAGTAAGGAATTTA 148295 29 93.1 32 .............G.............G. GATATGAGCGACAGATAATGAATCGACGAAAA 148234 29 89.7 32 .............G.............GC TACGTTAGTGCTGGACAAAACGCACCGCAGAG 148173 29 93.1 32 .............G.............G. ATTTGGGTGATGCTGTTATAGCTTTACACCGA 148112 29 89.7 31 .............G.............GA CTGGCGATAACATGCATAAATGCTCGATGGA 148052 29 96.6 32 .............G............... CCCCTCATTTCGCGGGGCTTTTTTGATCTAAA 147991 29 100.0 32 ............................. TGATAAGTCGGTTTGTAAACGGAGCCCTATTG 147930 29 100.0 32 ............................. CCACGCAACGAGTGAACAGAGTCTTACCGTTA 147869 29 100.0 32 ............................. CATTTGTATATAACGTAGAAACAAACGAAATT 147808 29 100.0 32 ............................. GTTGACTGCCCTGATAGTGCTATCGCAATCAA 147747 29 100.0 32 ............................. ACCAGAAATAACAAACGACACTTCTGTATTGC 147686 29 100.0 32 ............................. CTGGCGCTTAATTTAATTAATGGAGATTTGAA 147625 29 100.0 32 ............................. CGCCAACAGATCAAAGCTTGACAGCTTGTCTT 147564 29 100.0 32 ............................. CCATGGCAATTCTGTGTACCTTCCTAACCAAG 147503 29 100.0 32 ............................. GTTAATTCTTCCCACTCTTTCATTAGTCTAAA 147442 29 100.0 32 ............................. TAACGCAGCACCGCCTATCAGCGCTGCACTGC 147381 29 100.0 32 ............................. CTAGTGAAATATTTTGACTTATGGCGCGTGTT 147320 29 100.0 32 ............................. GTTACATGAAAGACGGCAAGGGCAACTTAGTC 147259 29 100.0 32 ............................. GTTCGAAAGACGAAAAGTTCGCGTTACAAGTT 147198 29 100.0 32 ............................. GCGTTACGTCACCTTCAATCGTCCTGACGTGG 147137 29 100.0 32 ............................. TTGAAATCGAACGCATTGCAGAGCATTTTGGC 147076 29 100.0 32 ............................. ACGTCCTGGTTAGCGAGTATGATCGCTCATCT 147015 29 100.0 32 ............................. AGAGGACGCAGCTAAAATAATTGCAGAACAAT 146954 29 100.0 33 ............................. TGATCTTGTGCGCCAAAAACTTTCTCTATGCTC 146892 29 100.0 32 ............................. AGATTGATTGTGATCACGAACCTAGAATATGT 146831 29 100.0 32 ............................. GTATTGCTGTTTAACAGGTGTTGAGTTCAATT 146770 29 96.6 32 .............G............... CTATTAAACGGCTCATACTAAGGTATTTTCCT 146709 29 96.6 32 .............G............... TCAGTGGTGCGTCCTGCGCCAAGCGGAATAGG 146648 29 93.1 32 .............G.G............. CGAGGAACCCGCGCAACTGAAGATGCAACAAA 146587 29 96.6 32 .............G............... TAAACAGCTGATGTTACGGCGAACCCTGAAAT 146526 29 93.1 32 ............TG............... CGTAGCGTGTTCAAAATCCAGTATCTCGACCA 146465 29 93.1 106 ..............T.............T GAGTTATTCAGGTCTGAATCATGTGCTGTATTCGTCCGTGAAGCAGCATCCCTCACGCATCCATGCGCTCACCTTAGCAGGCTGCGAAACTGTGTTTTGGTCCTAC 146330 29 75.9 0 T.CGC........G...........C.A. | ========== ====== ====== ====== ============================= ========================================================================================================== ================== 36 29 96.7 34 GTGTTCCCCGTACACACGGGGCTAAACCG # Left flank : AGAAGCCAGAGCACACAGCGTTATTTGTGAACTAGATGGCGAAGCAATCGGGTTTGCAGTGTATTTCTTTAATTATTCTACTTGGCTTGGCAAGCACGGTCTTTATCTTGAAGACTTATATGTATCACAAGATAAGCGCGGTGTTGGTGCAGGTAAAGGGATCATGAAATATCTCGCAAGACTTGCACTACAAAAGGATTGCGGTCGCTTTGAGTGGGTGGTACTTGACTGGAACAAACCATCAATCGACTTTTATGAAAGCATCGGTGCTAAAGCACAAAACGAGTGGATTATTTATCGCCTAACAGGACAGGAACTCATCGATTTTGCTGAGCAAGTATAGTGAAGTTTATTAGTCTGTTGGCTATACATTATTTCAAGAGAAACCCCCGATCTTTAACAATTTAGCCGAGTAAACATACGTAGAATTTGTACCCAATATTTTTGGTGAAAATTGCAATGGTGATTTTTGTTAATAGAAACAGTGATATATCTTTAGA # Right flank : TAGAACATTTTAGTAGGAAAGAGGCGGTGGACAGCTTGGCTGGAAGTGGTGGCAGGGTGAGACTCGAACTCACATCATATATAAACTGCATATAACCGTTACCCATTGGAAACACTGCCGCCATAGTTGATTATTAATCTATCATCAAAAAAATGCTAGCGTGATCTCTCTGTCAGTTTGTCTCAGGTCAATGACTTACTTTGTTTGTTCTGATACATTTATTTTACGAAAATTTTACCAGAGTGTTTTATGCAGGCTAAGGAAGAGCTGTATTTTAGATATATTGAAGCGGTATTGTTTTGGCAGGGAGAAATCCAGACCGGTACTTTCCAGAGCAAATTTAAGCTTTCAAGGCCCAGCGCACGGCGTTATGTCACCGACTTTATTGAGCGTTATCAGATTGCCGCAAGCTATAATGAGTCTGAGAAAGCCTATGTGCTGGCAAGCCCCTTTACACCTAATTATATCTCTCAGGATTTTACTGAGTATACTAGTCTCAC # Questionable array : NO Score: 5.81 # Score Detail : 1:0, 2:3, 3:0, 4:0.84, 5:0, 6:0.25, 7:-0.16, 8:1, 9:0.88, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGTACACACGGGGCTAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGTACGCACGGGGCTAAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-10.30,-9.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [14-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [48.3-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 84047-81766 **** Predicted by CRISPRDetect 2.4 *** >NZ_AJMP01000045.1 Pseudoalteromonas flavipulchra JG1 contig_45, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 84046 32 100.0 35 ................................ AAGAAGCGACAGATATCACCTATCAAGCACACTTT 83979 32 100.0 35 ................................ CACAAAATCAGTTTTAATCTAACCTATAAAATAAC 83912 32 100.0 34 ................................ AATAAAGGCAGGAAACCAATGACACTAAACCAAA 83846 32 100.0 35 ................................ TTTTACCTGTCCAGCTTTGAAGGTGTCCGAGTCTT 83779 32 100.0 35 ................................ TGGTGTAATCATTATGATACCCTCCTAACAGTTAA 83712 32 100.0 35 ................................ TGGTGTAATCATTATGATACCCTACTAACAGTTAA 83645 32 100.0 32 ................................ CTTGCTTGGAAATTCAGGCGAGTAGAAAACAA 83581 32 100.0 34 ................................ CCGTCCACTTTGGCTTCCAGCACCGTTGAGGCGG 83515 32 100.0 34 ................................ TTTTTAGACCCTGATAAACTGGATGACTCACTCA 83449 32 100.0 34 ................................ CGCCGCTACGGGTGACCAAAAGCAGCATATCGGT 83383 32 100.0 34 ................................ CGCCGCTACGGGTGACCAAAAGCAGCATATCGGT 83317 32 100.0 34 ................................ TGTGTAAAGTGGTGGTGATACGCCACGGGTTGAT 83251 32 100.0 34 ................................ ATCGCATCTAGATCTGATTTTGCCGTGATCAATT 83185 32 100.0 35 ................................ CATTGACCAAACAAATCAGACTAGATATCCGATAG 83118 32 100.0 34 ................................ ACCGATAGTTTTAGTTACTCGGTCTTTTACAATA 83052 32 100.0 33 ................................ ACGCTCCAACATCATGCGCTTTAGTTTGCCTAT 82987 32 100.0 37 ................................ CGACGGCATTTCAAAATTACAAACAAAAGTGTTTTCA 82918 32 100.0 34 ................................ CGATACATAGAGGCAGTTCAAATTTTCAGTGCCT 82852 32 100.0 33 ................................ ATACCCATAGATAGTAAATAATAATAATAATAA 82787 32 100.0 34 ................................ TAGCGCGTTATTGTATGTTATGTTACTTTCTGAA 82721 32 100.0 34 ................................ GGTTTCCCGTCGACCTGAAAGCTTGGACATTTAA 82655 32 100.0 34 ................................ AAAATCACCACTTTCAGCTACACAAAAGCTGGAA 82589 32 100.0 34 ................................ TTGCTCTTACGCTAATACCAAGAACAGCTAAAGC 82523 32 100.0 33 ................................ TTGTATGCGCTGCAATAGCTCGACTGTATCTTT 82458 32 100.0 33 ................................ TAACCATTCAACTTTATCTAAACCTATTTTTTC 82393 32 100.0 34 ................................ CATAAGGGCTTGACTATAACCAACAATTCTATAC 82327 32 100.0 34 ................................ TGGATCTCTTTCATGCTAGAACCCCATGTTTTGT 82261 32 100.0 33 ................................ AAACTCTTTAAACTTTAAATCTCTAGCCTCTTT 82196 32 100.0 35 ................................ AATACAGCGGATAGTCACGCCACGGTCGAGCCTAA 82129 32 100.0 35 ................................ TTTGTGCACTGGCTTCATCTGTTGCGCCCTGGACG 82062 32 100.0 34 ................................ CCCGAGATAATGAAATGTTATCCACAGCCTCTAT 81996 32 100.0 35 ................................ CCCTCTAGAACTATTCCAATATCCCCCCTTTACAA 81929 32 100.0 34 ................................ ACTTTGGCTATGTAGGCCAAGGTCTGCGTGTAAA 81863 32 96.9 34 ...........T.................... TGAGGAAAGAGAAATGAGCGCAACTGATACTGCC 81797 32 90.6 0 ............A......T..........G. | ========== ====== ====== ====== ================================ ===================================== ================== 35 32 99.6 34 GTCGCGCCTCCCGCAGGCGCGTGGATTGAAAC # Left flank : TTTGTCATTAAAAAATAAGGAGTTTTATCAATGATGGTATTAGTAACATACGATGTATCATTTACTAGTGAAGATGGACAAAAGCGACTTCGACAATTGGCTAAAGTATGTCTAGATTATGGTATGCGTGTGCAGTATTCAGTATTTGAATGTGAGATAGACTCAACGCAATGGCTGATTTTTAAAGACAAACTTTTGTCTATTTATGACCCTAAAGTAGACAGTTTACGCTTCTATAAGCTTGGCAGAAACTGGCAAAACAAAGTTGAGCACCATGGTGCTAAAGTTGCCCTTGATATATTCAGAGATACCTTAATTTTATAATCGCTAGGGTGTAGTTCTCATGAAAACCCCAGTGATCTAGCGATTTTATAAGTTCTTTAAAAATATAGATAAATTTACTTTTTGACTAAGTATTGCAAGCGAACGGCTTTTGTTTGCACAAAGTTAGCGGGAAATAATGCATTATGTTAGTGTAAGCGTGCCTTTGAAATAAGGCA # Right flank : TGAGAATGACGTGATACCAATCCCAGCAATAACGTCGAACCTCCTCGTAGGAGCTGGTTTACCCAGCGATCTTTTTAAAACGCCGGCTGCGGATTACTCAGGGCTATGAGGGGCATACCCTCAATAAGGTTTGTCTTTAAAGAGAGGTTAAACGTGAAAAACGATGAAAATGTTTTAAATTACGTAAAGTTGGTGAAGTATTGAGTGCTTTATTGTTTTTTCATTGCAATTTATCGAGAGAAGCTTGTCTTTATATTTAACTAAATGTAATGTTTGGGTTAATTTCAAGGGAGCTAACGTAAAACAATGGTGGACAGATGCAAACGCCAGAGGAATATGAGGTAAGCCAGCGGATAGGCAGGTTAATACTTGGGTTAAAGCGTACCAGAGGTATGACCCGAGAAGATGTCTGTAAACGTTTAGGTATAGGCTCGCGCACGTTAGACAATTACTTAAACGGAGTGAGCTCATTTAAACTTGGGACATTGTTAAAGTTTGCG # Questionable array : NO Score: 9.24 # Score Detail : 1:0, 2:3, 3:3, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGCCTCCCGCAGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.20,-7.20] Score: 0/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.18 Confidence: HIGH] # Array family : NA //