Array 1 1923721-1924786 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP045766.1 Salmonella bongori CFSAN000510 strain SGSC 3100 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1923721 29 100.0 32 ............................. CGGCAACCGACCCATCTGGAGGTACTGAAAAT 1923782 29 100.0 32 ............................. GGCGGATACCGCTAATAAAATGCTAAAACAGC 1923843 29 100.0 32 ............................. GCCATTAACCGTGCGTTGCGTCAGGTTGATCC 1923904 29 100.0 32 ............................. TCTAATCAGTATAATGAAGAGACTTTAATTAA 1923965 29 100.0 32 ............................. ACAATTCAGGACGTGCTGATTTCTGGGCTGGT 1924026 29 100.0 32 ............................. TTATTCCTGAAAATCCTAATCTTCTATTTGTA 1924087 29 100.0 32 ............................. AGTCATAAAATTCGGCGCATACGATAACTTTT 1924148 29 100.0 32 ............................. AGCGAGTTCATTATAAATATCATGGTTGCCGC 1924209 29 100.0 32 ............................. TACCCACGCGCAGCACGCCAATTTACGTAGTT 1924270 29 100.0 32 ............................. GTTCGCCCTCGGCCAGCGTGTAAAACTTGATT 1924331 29 100.0 32 ............................. CCAATAATTAAACGTTGCATTTGTTGCTTCGG 1924392 29 100.0 32 ............................. TTTTTTTTGTTTTATCAGGGCTACGCTATAAA 1924453 29 100.0 32 ............................. GAATATCACATGAAATGTCAGGAACGCCTTTT 1924514 29 100.0 32 ............................. ATGTACGCCAAATTTTCGCAAGTCATCGATCA 1924575 29 100.0 32 ............................. GAAACAGTTACGCATCCGCTGTTTCCTGCTGG 1924636 29 100.0 32 ............................. CTTCCGGATCATCCTTTGGTAACGGCTCTGAC 1924697 29 100.0 32 ............................. GCAGATGAAAAATACTGCGGTTGGGTGCCCTC 1924758 29 96.6 0 ..........................T.. | ========== ====== ====== ====== ============================= ================================ ================== 18 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GCGAATGAAATCAAGCATCCGGTTGGACGAGTACGTGATATTGAGGCGCTGGATGAGTTGTTAGCCACGTTGAGCGACGATAAACCGAGAGTGATTGCTTTGCAGCCTATCAGCCAAAAAGAAGACGCGACGCGTCTGTGTATTGATACGTGCATTGCGCGTAACTGGCGGCTGTCTATGCAAACGCATAAGTATTTAAATATCGCCTGATATGCTGTCCGTTCTACGGATGGCCTGTCGTCGTGTGTAATTTACCTATCATCTTGCGTTCGCTATTTCTCCAAAAAATTCGAGGAATGTATAAAGTAGCTGAATAATTTTCCATAGCGAGACATGGATCACACTATTCTGGTGAGTTTAAAGAAAAAATCGTTCACTGAATTTTTTTGTATCAAAATCAGCTGATTAGATGTTCTTTAAGAATTTAAATTTGTTGCAATTATGTTGGTAGGATGTGGCGTTGATAAAAAACACTGAATAAACAATTAGGTATATTTAGT # Right flank : GTTCCATAACCATAATCTGCGTACCAGTAATCGTTCGTACCAAACAGTAAAGTAAAAAGAACCGTGTTTTGTGGGGGATAAAGGAGAGGGTGATGGCGTTAACGATTAAGGTATTGCTCGAAAATCATAAAGCCGCTGGTGTGGATAACGCTTTGAAGGCCAGGCCAGGATTAAGCTTATTAGTTCAGGATGAATCTACTTCGATATTATTCGATACCGGACCTGACGACAGTTTTCTACAAAATGCGTCGACAATGAGGATCGACCTGTCTGATATATCTGCGGTGGTGCTTTCACATGGACATTATGATCACTGCGGCGGCGTACCGTGGCTTCCTGATAATAGCCGAATCATCTGTCATCCAGAAATGGCGCGTGAACGTTATGCGGCAATAACGCTTCCTGGTATGACCCGCAAAATAAAAAAATTATCGCGAGAAGGGGACTATTCACGTTACCGAATGGTGTACACGCGCGACCCCATGCCAATTAGCGACAAA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 1940768-1942017 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP045766.1 Salmonella bongori CFSAN000510 strain SGSC 3100 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1940768 29 100.0 32 ............................. AGACATCAGACCACCGCGAGCCAGGAACACGG 1940829 29 96.6 32 ............................C GGGTATACGTTACACCGGGCAAATGTGGTACA 1940890 29 100.0 32 ............................. GGGGGATGGAGGTGCTAGACCCACAGTTTTAG 1940951 29 100.0 32 ............................. TTGGGCGACTCCAACGTTATAAAAATCAAAAA 1941012 29 100.0 32 ............................. AATAATAGATTTATTAAGTGCGGGAGAAATTA 1941073 29 100.0 32 ............................. TAATTCCTGTTTCCGTCATTAGCTGGCATAGA 1941134 29 100.0 32 ............................. CATATAGTCATCTTACGCTAACAACTTGTTAA 1941195 29 100.0 32 ............................. GATATATTCAGCGATATACTAACGGAATTAAT 1941256 29 100.0 32 ............................. CGTTTCTCAATGGTGGGATGGCGCAAATGAAC 1941317 29 100.0 32 ............................. CGGCAAACAAAATAGCGATTCACGGTAATACG 1941378 29 100.0 32 ............................. GGAGTTGCAGCTACAATTGTTGGTAGCAAGGA 1941439 29 100.0 32 ............................. GACATAACCGGGTTTTGCCGACACAAGGGGTT 1941500 29 100.0 32 ............................. TTACGCTGTGTAAAATACGGGGTGCATTCTAG 1941561 29 96.6 32 ............G................ TACAGGTTGCCATCGGCCCCCATTCCAGCCAA 1941622 29 100.0 32 ............................. GAATCCAGTTGCCGTTTAAATCAATTCGCGCC 1941683 29 100.0 32 ............................. CACTACCCGTCTGAGGCCTGGACGATTATCCA 1941744 29 100.0 32 ............................. AATTCAATACGGAGGGGTGTCAATGGATATCA 1941805 29 100.0 32 ............................. CGTATGGAGAGATTGGCAAAGATTTAGGGTAG 1941866 29 96.6 32 ................A............ GTCAGAATGACGAATTTCCCTGAATTATCAGA 1941927 29 100.0 32 ............................. CAATGACCTCCCACCATAGTACCAATACCAGC 1941988 29 86.2 0 .....................C.TT..T. | T [1942013] ========== ====== ====== ====== ============================= ================================ ================== 21 29 98.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTGGCCGCCGGAGAAATTGAACCGCCTCAACCCGCGCCGGATATGCTGCCGCCCGCGATACCGGAGCCGGAATCTCTGGGTGACAGTGGGCATCGGGGGCATAGTTAATGAGCATGATGGTGGTGGCAACTGAAAACGTACCGCCGCGTCTGCGAGGGCGGCTTGCCATATGGTTACTGGAGATTCGTGCGGGCGTTTATGTTGGCGATACCTCAAAACGCATTCGGGAGATGATCTGGCAACAGATAACACAATTGGGTGGAGAGGGAAACGTAGTAATGGCCTGGGCAACAAATACGGAGTCTGGTTTTGAATTTCAGACCTGGGGGGAAAACCGCCGTATTCCGGTAGATGTAGATGGGCTCAGGCTGGTTTCCTTTCTTCCTATTCAAAATCAATAAGTTGAAGGCTCTTTAATAATAAGGAATTGTTGCTTTAGCGTTGGTAGGTTGTTATTAAGCCAAAAAACGTTTTTAGAACAATTACATAGATTTAGA # Right flank : GGATGTTCTGACACGTGGAGTGGTGAAATTGACTATCTGTCAATAAGACAACACGATGGACCATAATCATGGCTGCCGTCCGTATTGCTGAAATATCTCTTTATATACTGCGGGGCGCAGATACGTCCCGCGCCAGTATGACTATTTGGGTTGGATGGGCGCCGCCTTTGCCAACTCTTTTACCAGTGGCAGCATTATCCGCACCACGTCGCGGCTACGGCGCTCAATTCGCCCAGGTAAGGCTTTATCGATATGCTGTTGATTATCCAGCCGTACATTGTGCCAGCTATTGCCATCCGGAAAAGAGGCATTTTTCGCTCTTTGCTGGTATCCATCTTTTTTACCCAGACTCCAGTTCGTCGCTTCAACGGAAAGCACAGAAATCCCGGCGTCATCGAAAACTTCCGCATCATTACAGCAGCCAGTTCCTTTAGGATACGCCGGATTGAGTCCCGGATTCGTGCTGGCGGCGATACCATGTTGACGCGCGATGGCTAATG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //