Array 1 1425-4198 **** Predicted by CRISPRDetect 2.4 *** >NZ_VJZD01000282.1 Streptomyces adustus strain NBRC 109810 NODE_282_length_11721_cov_27.5708, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1425 29 100.0 32 ............................. CAGCTGAGTTCCCGGGCGAACGTCCAGTCCTT 1486 29 100.0 32 ............................. GAAGTTCCTGTTCAGAGGCCCAGAAGGGGCGT 1547 29 100.0 32 ............................. CGGGACAAGTCCAGCTACGCGGGTGACGGGCT 1608 29 100.0 32 ............................. TGGCCACGGCGTGGCAGTTGCAGACCGGTGGG 1669 29 100.0 32 ............................. CGAAGATGCCCGCGATTTGGGCTAAGCACTGG 1730 29 100.0 32 ............................. GAGCGTTATTGCCCGGCAGGCAACACCGGCTC 1791 29 100.0 32 ............................. CACAGGTCGAGATCTTCGAGCAACTGCTCAAC 1852 29 100.0 32 ............................. GCGGCCGTCACGATGACCGGCAACCTGCAGAC 1913 29 100.0 32 ............................. AGGGTGGGCTTGACCAGGGGAATCGCGGTCGC 1974 29 100.0 32 ............................. GACCTGGTGAAGATCACCGGCACGCTGGAGAC 2035 29 100.0 32 ............................. AAGCGGCAGATCGTCTCAGCGTCGGAGCCGGC 2096 29 100.0 32 ............................. GGCTTCGGTCGCGGTCGGCACTGTGCCGCAAG 2157 29 100.0 32 ............................. TGGAACTGGCCGAGCTGCAGCAGCGACTCGAC 2218 29 100.0 32 ............................. TTCCCCACAGCTTTCAGGTTCCTCACCTACAG 2279 29 100.0 32 ............................. CAGTCGATCTCGTGGATGGGGCGGTCGTCGCG 2340 29 100.0 33 ............................. ACGAAACTCTGCCCCGGCATGGACGCCGGGAGG 2402 29 100.0 32 ............................. GGCGCGACCAGTCGCCGCTGCTGACGCAACTC 2463 29 100.0 32 ............................. CACCAGGAGAAACCGCCGTCATGGGCATGTAC 2524 29 100.0 30 ............................. TGGGGCGGGAGCGTGGGCGCCGGTCGAGGG 2583 29 72.4 32 ACCA.......GGGT.............. GACGGAACGGAATGGGCCCTCGATTTCTACGC 2644 29 100.0 32 ............................. CACGGCGCGACGGGCTGGCGGCCTGCTCGTCC 2705 29 100.0 32 ............................. CACCACACGGCGGGCAGCAACTCGCTCAAGGC 2766 29 100.0 32 ............................. GTCGTCCACGCGGTGTCGCGGGTGACGACTCC 2827 29 100.0 32 ............................. GTCGTCCACGCGGTGTCGCGGGTGACGACTCC 2888 29 100.0 32 ............................. TGGCGGACCATGCGCACGTCGTCGGCCAGCTC 2949 29 96.6 32 ............................T CCCGTCCTGGACGTGGGCCGGCATCCACGCAG 3010 29 100.0 32 ............................. GACATCGAGCGCACCCGCATCGCCAACGAGAA 3071 29 100.0 32 ............................. CGCGAGGTCGAGAAGCGCGAGGACAAGAGGCC 3132 29 96.6 32 ............................T AGAACGGTTTTCAACGACCGCGCCATGGATTG 3193 29 100.0 32 ............................. CCGAACTCGCGCTCGTCGGACGGCGGTAACAC 3254 29 100.0 32 ............................. GCGCTCCAGTCTCAGCTGGAGGATCTCCAGCA 3315 29 100.0 32 ............................. AGCGGACTCACTTTCCGGGGCGGGATCGGGCT 3376 29 96.6 32 .....T....................... GCCCCGGAGACGGGGCGGGGCGGAGCATCCGC 3437 29 100.0 32 ............................. GACGTCCGGGTGATCGCCGAGGCTTTCAGCCC 3498 29 100.0 32 ............................. TGGTTCAGCGACAAGTGGACGTCTATCAAGAA 3559 29 100.0 32 ............................. GCCGCCACCCCCGGCCCATGGGGCACCTACGA 3620 29 100.0 33 ............................. GGGGCACCGGAGTCGGCGAGGTGGAGGACCGGC 3682 29 100.0 32 ............................. ACGAGCTGCGGCTTGGGGAATCCCTGGCTGAG 3743 29 100.0 32 ............................. CCGCGTGCATCGAGGTAGGCGGTGCCAGTGAA 3804 29 100.0 32 ............................. ACGACCCCCGCAGCCTGGCGTTCGCGCACGGC 3865 29 100.0 32 ............................. GCGGAGGCGCTGCGACTGCTGCGCCCGGGGAT 3926 29 100.0 32 ............................. GAAATGCGGCTGACGGCCGGTGAGAACGAGCT 3987 29 100.0 32 ............................. TCCCCCGAGCACGCCGCCGAGCACGAGCGCCT 4048 29 100.0 32 ............................. TCCCCCGAGCACGCCGCCGAGCACGAGCGCCT 4109 29 100.0 32 ............................. GAACCGCCGACGACCGCGAACAAGGTCCAGTT 4170 29 89.7 0 ........................C.T.T | ========== ====== ====== ====== ============================= ================================= ================== 46 29 99.0 32 CTGCTCCCCGCACCCGCGGGGATGGTCCC # Left flank : GACGGCCCCGACGACTACGGGGACGGACTCTGGTGACCGTCATCGTCCTCACCAACTGCCCCGCCGGCCTCCGCGGCTTCCTCACCCGCTGGCTCCTCGAAATCTCAGCAGGCGTGTTCGTCGGCAACCCCAACGCCCGCATCCGCGACATTCTCTGGAACGAAGTCCAGCAGTACGCCGACCAAGGCCGCGCCCTACTCGCCCACACCACCAACAACGAACAGGGCTTCACTTTCCGCACCCACGACCACGCCTGGCATCCAACCGACCACGAGGGCATCACCCTCATTCGCCGTCCTGACCCCAACGCGCCCCGTCCATCACCGGGCACCACCTCACCTGCAGGCGCCCAGAGCCCACCAACTGGCTGGAGCAAAGCATCCAAACGACGACGCTTCGGCAGAAGCTGACAAGGAGTGCCCGCTATGAACCTTTCGCCGGAAACTGAGAACGTGGTCAGAAAGCAGCGGCGACGACTGTAAAACTGCAGGTCATTCAGT # Right flank : TCCTGGGCGGCCGGAGTGTCCGTGTCGTCGACGGGGTGGGCTTCGAACAGAGTTGGGGTGGTGTGGAGTTCGTTCATCCGGCCCATTAGGTGGGGGAGGTAGGTGCCGTTCCAGCTGGTGCACTCGAATGCTTGCGCGATTCGCGGCCGTCGACGGGAGTTGACGCGACCCATGTGGACGGCCATGCCTCGCTCCTGCGGCCCTCAGGGCCAGGCGATGTGCGGCCGGCGAGGTCTTCCACCGGGTGGAGCCGCCAGGAACAGCACGTCGATCAAGTCCCAGGGGATGAGGTCGTGCTCGCTGGGAAAGCGGCCTGCGCTCTTGCCTCGGTCTGCGAGGATGGCGACGGCGGCCGATCCCACTAACGCTGGGGTCGGCCGCCGCCTTTCGTTTGCGGCCGTATCCCGAAACGGCCGGGGCTCAGGCCAGGTGATCGAAGGCGCCGGCCTTCGCTCCGGCCAGCATCGCGGCGATCTCGTCCCGGGTGTACACGAGCGGGG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCACCCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCACCCGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 6537-7419 **** Predicted by CRISPRDetect 2.4 *** >NZ_VJZD01000282.1 Streptomyces adustus strain NBRC 109810 NODE_282_length_11721_cov_27.5708, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================== ================== 6537 29 89.7 34 ..A.............A........C... CCCCACGAGGGGGTGTGGGCCCCGGCCGGGAGTC 6600 29 100.0 32 ............................. GGCGTGGAACTCCAGCAGATCACCCTCGCTCC 6661 29 96.6 32 .................A........... GCCCCGTACGCGCCGACCGCGCTCTTGGCGGC 6722 29 96.6 32 ................A............ GTCCGGATGGTCGCGTTGACCGTGTCGAGGCG 6783 29 100.0 32 ............................. GAGCCGCCTACGACCGAGAAGAGGTTCCACGA 6844 29 100.0 32 ............................. GGGTTCCGCTATCAGGCACTGACCCCGTCGAC 6905 29 93.1 32 ..............T..........C... TGCTGGAGCGTGAGCGCCAGCGTCTCGGTCCG 6966 29 93.1 32 ........T.....T.............. GTCTACGACCGGAACCGGACCACCCCGGCCTT 7027 29 93.1 32 ..........T.T................ TACTACCTCGCCACGCCCGAGGAGATGGGTTA 7088 29 100.0 32 ............................. GCGGTGGACGCTGGTACCGGCGACAACACGGT 7149 29 89.7 32 ...............AT......A..... AAGCCAGACATCTGGCCGGACCCCACGGACGG 7210 29 89.7 32 .....T....T..T............... CCGTTCCGCGAGCGGCTCGTGGTCAGCACGCA 7271 29 89.7 32 .............GT.............T CAGGAAGGTCCAGGGTCCCACGGCATCGCCGT 7332 27 93.1 32 .................--.......... GACTACCACCGCTTCGCTGGCGACCCGGCGGT 7391 28 79.3 0 .....-....G.T.T.....A....C... | T [7418] ========== ====== ====== ====== ============================= ================================== ================== 15 29 93.6 32 CTGCTCCCCGCACCCGCGGGGATGGTCCC # Left flank : AGCAGGCTAGACATCGCCTTGATGATCGCCTTGAAGGGCTGCCCCTGCCCAAGAAGGTCAGGACGCCCCGAGAATCCTCTTTCACTTTCTTCTTTGCGGACGTAAATTCTGACGTCGACCAGGACGTCATCTCTGTAACTGGCAATGCGGGCTGCCCGGCCTGCCGCAGGACGGCAATCGTGAAGGCGGCACCCGACCTGACGTCACCGGAGGCTCCTATGGCCGCTGTGGCTCTGAGCTGTACGTGGTGCCAGCTCCAACTAGAGGGAGCCGAGGAGATACGGGCGTCGGGCGTCGACTTGAGCGACGCCATGGAGGTCGCATCTCGCGTCATCTACGGTGGTGATCCCGACGACGTAGAGGCGAGCTGACGCCACCTCACCAAGAGCTCTGATCCCGGCCGGAGCTCACCTCAGGCAGCATCCGAGTCGGCGGTGGCCGCGGGCATGGGCAGGGTCACGAAGCGGCTGCCTTACAGGTGTCGCGCATCATGCCCAGAT # Right flank : CTCGAGGCCGTGCGTTACCTCGAGCCGCCTGGCCTGCTCCGGCCCGCACAGCGAGGTACGGGTCTACGACCCGGAGTTCGGGCGGCATCAGACGTATGGACCCGCCGAACGCATCGAGGTCCTGGCCGAGGTCGGCAGGCAACTGGGGTGGGCGGAAGCCGGGTGCGTCCTGTGGCCGGGCGACGGGCTGCTGGCCCCCGCCGATGCAGAAGAAGCCACGTGATGTCCAGGCTACGAGCCCAGCGCAATCCGAGCGGCCGCGAAGGTTCAGACACACGCCTGCCGCCCCGGGACCGGTGTCCTGGGGCGGCAGGCTGATCAACCGTTATCGCTCACGCCGGTGGCTCACAGATCCGTCCACGGGCGAGGCTTGCCGCCGGTCAGAGGTATCCACATGCTCTGGGCGGGGCCGTGCTGCTCCAGGTCTTCCAGCACGGCGGCTCCCAGGCGGACTTCGCGGGCGAGGCTCGCCACGAGCGGGTGCTGGGCCACCATCGCCT # Questionable array : NO Score: 5.35 # Score Detail : 1:0, 2:3, 3:0, 4:0.68, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.41, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCACCCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCACCCGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [5-17] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [35.0-26.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 3881-3303 **** Predicted by CRISPRDetect 2.4 *** >NZ_VJZD01000426.1 Streptomyces adustus strain NBRC 109810 NODE_426_length_4344_cov_26.2431, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 3880 29 100.0 32 ............................. TACACGGCCGTACTCATCGGCCTGTACCTGGG 3819 29 100.0 32 ............................. GCCGCTCAGGTGGTGCCGGGGGCCGGGGGTCT 3758 29 100.0 32 ............................. CCGCCGGCCATCGGCCGCGCGGCAGCAACGAC 3697 29 100.0 32 ............................. GCCGGATGGGACGGGATGGTCGACGGCATCGC 3636 29 100.0 32 ............................. GTCTGGGACAACGTCAAGAAGGCGATCGGTAC 3575 29 100.0 32 ............................. CCATGGCCTGGCCAACCTTGTTGTCGGACCAG 3514 29 100.0 32 ............................. GCTGCCGTGTCGAAACCCCACGCCAACGTGGT 3453 29 96.6 32 ........................A.... CCCAAGCCGCCGGCGGTGACCACCCCCAAGGC 3392 29 100.0 32 ............................. GCGTTCGGGTCGTCGTTTACGACGATCAACAC 3331 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 10 29 99.7 32 GTTCTCTCCGCGCGAGCGGAGGTGTCCCG # Left flank : CTCCCACCCGCCCCGACGACGAGGAACTTGACGAAGAACTGGTCGACCTCTGGGACCCCGTCACCGGCCCCGTCCCCGGCGGCACCAACCACGCTCCCGCAGACTGACGACGAAAGGCCCACCCCGCCGTGCCCGCCATGACCGTCATCTCCGCCACCGCTGTCCCCGATCACCTCCGCGGTGCTCTGACCCGCTGGCTCCTCGAAGTCACCCCCACCCTCTACATCGGCACGCTCTCCGCCCGCGTACGCACCGAACTCTGGAACAGCCTCACCTCCTGCCTCACCGACGGCAGCGCCGTCCTGGCCTACCCTGCAGCCAACGAACAGGGCTTCACCCTCCACACCGCTGGCCCCCAACGACGCGACCCCCTCGACTTCGACGGCCTCACCCTCATAGCCTTCCAACACGCCACCGCAAGTCAAGAAATCGCAAAGGGCCTATAGAACCGCAGGTCGCGAAG # Right flank : TACGGGCCGGTCGGGACCGCCGCGCTGGACACCGTGCACCCTGATGCCCCGCCGCCCAGCGGGCAGCCGTAGGCAGGTCTGGGTCGGACTCGGCTGTGGGGGTGTTGGTTTCGCAGCGTTCGCTGTCGTAGCGGTCCTGGCCGGCGCTGCCTGCACGCAGCGAACCCTGCCTGCCGCCTGTGCACCAGCGGCCCAGGTTGCGCCAGTTGCTGCGCGGTCTGCCTGAACGGTGAACGTTCAAGCTGCCGTAGGGCGCAGGCCGGTCCAGGCATCAGGCCGGAGTCTCGGCAGGCATGAAGAAGGGGCGCCCTGGGGGCGCCCCTTCTCGCGAACAGTGACGGTCGGTCCCGTACCAGGGGGACCGTGAGACGCGGATACCAAAGGGGTGTCAGCCCCTCTTGCCACTGGCCCGCATGGTGCCTCCCGCTCTCGATCGCTTGCCTCGGTGCCCGGTCCCTCTGGTGCAACTGACCTTGCCGCTCCGTGTCGGGTGGCCGCCT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCTCTCCGCGCGAGCGGAGGTGTCCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCTCTCCGCGCGAGCGGAGGTGGTCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.10,-11.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [21.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 24769-23108 **** Predicted by CRISPRDetect 2.4 *** >NZ_VJZD01000091.1 Streptomyces adustus strain NBRC 109810 NODE_91_length_33307_cov_39.4636, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 24768 29 86.2 21 ...........C.A.AT............ GATTCCAGGGGCATTATGACC Deletion [24719] 24718 29 93.1 30 .......................AA.... AGCCCCGCGCAATCCGGGGCTCTCGCAGGC T [24691] 24658 29 100.0 32 ............................. TGGCTGGGCGCGTTCGGGGTTCCGGTGGTGCT 24597 29 93.1 32 ........T..........C......... GACACGTGCCCGTACGCGTCCTCGTTGCGGGC 24536 29 100.0 32 ............................. GTCCTCGGCGATCCCGGTGGACGACAGGGGCA 24475 29 100.0 32 ............................. ACGCGGCGAGCGCGGATACTCCGGCGTGAAGG 24414 29 96.6 32 ..........................T.. GCGGGCCAACTGCCCGGGTCCTGGTGCGAGTT 24353 29 100.0 32 ............................. GACGAGGCCCGCGCCCGGCGCCCGGTCCGCCA 24292 29 100.0 32 ............................. ACGCGGCGAGCGCGGATACTCCGGCGTGAAGG 24231 29 96.6 32 ..........................T.. GCGGGCCAACTGCCCGGGTCCTGGTGCGAGTT 24170 29 100.0 32 ............................. GACGAGGCCCGCGCCCGGCGCCCGGTCCGCCA 24109 29 100.0 32 ............................. ACGCGGCGAGCGCGGATACTCCGGCGTGAAGG 24048 29 96.6 32 ..........................T.. GCGGGCCAACTGCCCGGGTCCTGGTGCGAGTT 23987 29 100.0 32 ............................. GACGAGGCCCGCGCCCGGCGCCCGGTCCGCCA 23926 29 100.0 32 ............................. CTTGGTGATGTACAGATCCAGACGGACCGATT 23865 29 100.0 32 ............................. CTGTTCTTCGCCGCCGATGGCGTGCACGTCCT 23804 29 100.0 32 ............................. CCCTTCGCCGCCGTGCTCCTGGGCGTGGGGAC 23743 29 100.0 32 ............................. GAGAACTAGGAGGTCACCCCGTGTCCGGAGAA 23682 29 100.0 32 ............................. GGCGGTGCCGTCGGCGGTGAGGGTCGGCCGGA 23621 29 100.0 32 ............................. AGTGTCTCGCCGTTGAGTTCGATCCTGAGCAT 23560 29 96.6 32 .......G..................... CGGGTGTTCGGCGGGAACACCGACGGCCGTCA 23499 29 100.0 32 ............................. TCGACTCGGATTTCGTTCCAAGTACTCGTGGA 23438 29 100.0 32 ............................. TGGTCGCGCACCTTCTGCGAGGCGTAGCTGAT 23377 29 100.0 32 ............................. GACGAAGTGGTCCTGGCCGTACCGACCGGGTC 23316 29 96.6 32 ..................A.......... AGGTCGATGGTGTCGCCGCCCCGGGCCTCGTC 23255 29 100.0 32 ............................. AGGAACTGCAGGCGCAGGCCCTGCTCGATGAC 23194 29 86.2 29 .......................CCCA.. TTCAAGGACGCCTGATCACTATGGCTTAC 23136 29 69.0 0 G..G.T...A.T..T......GC.....G | ========== ====== ====== ====== ============================= ================================ ================== 28 29 96.8 31 CTGCTCCCCGCACCCGCGGGGATGGTCCC # Left flank : ATACAGCAAACACCGGCACAAAGTGGCCACTTCCGGCGTAATCGCCCGCCGCCACCCGCTGCATCCCGTCATGCGGACGCGCCGTAGCCCACCTGCGCGGCGCCAACTGCACTGTGTGCAGGCACGTTTGACACCACGAAGCCCATACCTCGATTATCGCCACCAACACAGCAACGATTCAAGGGGGAAAAGTGTCTGGGTGGATGCGATGGCTAGCCGTGGTCGCAGGAGTGATCGTCACCTTCTGGTCGGGTCTGGTGCTAGGCCGGTGGCTGCCCTTGGGGGGACCTGATGACGACGGAATCAGGTGGGGAATCGCCACAGCACTGGCAAGTGCCATTTCCGCCGTCGCCGTCCCGCCCCTGGTCCGCTGGGCTGAAACGAAACCCGACCCGTCAACAGAACCATGAATCCCGGGAGACCACCCGCTGCAACGATGACCGGCAACCCGGCTAAGCTCACTGACCAGCAGAACCTTCAACAACAATGAAACGCACACC # Right flank : GCATCTACCGCCGCAACAAGGCCTGTCAGCCCGTTACACCTGCACGCGCTTCAAGGTCGGCCACAAAGTGCTGTGCCAGTGCTTGAGGCCCGAGCGTGCTGAGGGCCCAGAGGCTGGTGGCGTGCTGAGCGCTGGGGCAGAGCGCGCCTGCCGCGTCTGTGGGCATTCGGAAGGGGACCACCGGGATGCCGTAGGCGTCGAACGGGCGGTGGTCGAGGTAGCGCATGCCACCTGTACCGCACAGATAGTGCGAACTGCCGGTGGCGGCTGCCAGATCGGCGAGGCGTTGAGATCGGCCCTGGCGTGCCAGAAGGTCGCTGCTGGCCACTGTCTGTCCTTGCCAGCCCAGCGCAGCAAGGAGGACCGTCGTCGATGCGGTGGCGATGCGGGCTACTTGGTCCGTGGTGTCGATCGTGTGCAGGACTGCCTCCAGGGCCGCGCGGATCGCGGTCCAGTGGTGGCTGCATCCGTAGTACTGGCGTACCAAGAGCTCGGCTGTG # Questionable array : NO Score: 6.07 # Score Detail : 1:0, 2:3, 3:0, 4:0.84, 5:0, 6:0.25, 7:-0.02, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCACCCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCACCCGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [15-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [36.7-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 38652-44538 **** Predicted by CRISPRDetect 2.4 *** >NZ_VJZD01000055.1 Streptomyces adustus strain NBRC 109810 NODE_55_length_44688_cov_37.412, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 38652 29 100.0 32 ............................. GTCAGGCCCTCGTCCCTCAGCACCTCAAGAGT 38713 29 100.0 32 ............................. GGGGGTCTCCACGGGGGCAAGACTGCCCGCAC 38774 29 96.6 32 .........................T... TCCTCCATCTCCGTCTCGCGGGCCTCGATGTA 38835 29 100.0 32 ............................. CCGTCCGCGAAGACATCAACCAGGGCCCAGCC 38896 29 100.0 32 ............................. GAGGGGCCGATGGGCGATCCGGCGCGCAGGAT 38957 29 96.6 32 ................C............ CCGGGCGACGAGGCGTTCATCCGGATCCGCGT 39018 29 100.0 32 ............................. GCTCGCGTGGTCATGGACCTCGACACCGACAG 39079 29 100.0 32 ............................. TATTCGCGGACCGTGTTCCCACCGTCCGCCGC 39140 29 100.0 32 ............................. GTGAAGATCGAGAGGCCGCAGGACACCGAGCG 39201 29 100.0 33 ............................. GGAACAAAGGACCGGCTTGAGGCCGGCTGTGGT 39263 29 100.0 32 ............................. GACGACGAGTTCGAGCAGGGCCGACAGGCCCC 39324 29 100.0 33 ............................. CTCGGACACGGTCCCCCCCAGTGACGGTTCTGG 39386 29 100.0 33 ............................. TCCGGTGGAGCGGAAGGAACCCTTGTCGACGGG 39448 29 100.0 32 ............................. ATCCGGAAGAGCAACGGCAACGAGGCGATCCT 39509 29 100.0 32 ............................. ATCCGGAAGAGCAACGGCAACGAGGCGATCCT 39570 29 100.0 32 ............................. GCTCAGGGACATCGACGCCACCGACATCAACG 39631 29 100.0 32 ............................. GCTCAGGGACATCGACGCCACCGACATCAACG 39692 29 100.0 32 ............................. ACGGGGGAGCTCGCCAAGGCGACGCTGGCCGA 39753 29 100.0 32 ............................. GTCGCCCATGGCCGCAGCTCCTAAGTTCAGGC 39814 29 100.0 32 ............................. ACCGACGACGCCTACCCCGAGGCCACGCAGAA 39875 29 100.0 32 ............................. TGGCGCTTGGGCTGCGCAGGCAGGTGCAGCGC 39936 29 100.0 32 ............................. AACTCGCGGTCCGCCACCAACACCCTGATGCG 39997 29 100.0 32 ............................. GGGAAGAACACCGCTTCGATCTGGAGCACGAC 40058 29 100.0 32 ............................. TCGGACTGGCATCCGATCGAATACACCCGGGC 40119 29 100.0 32 ............................. GGTACGGCGGCCAGTGGTGCGGGCTACAAGAG 40180 29 100.0 32 ............................. GCCAGGACCAGCGGCACGATCACGTACGCCTT 40241 29 100.0 32 ............................. ATGATGTCGCCCAGGACGCTGTCCCAGTCCGC 40302 29 96.6 32 .................T........... TTAGCGCACCGGGCCTTCGCTCGTTCTCAGTC 40363 29 100.0 32 ............................. TCCCGGCCGACTGGAACGGCAGCCGCATGGGG 40424 29 100.0 32 ............................. CAGTGGGTACGGGAAGACATCGTCACCCACAC 40485 29 100.0 32 ............................. GTGCCGAGCGTCGTCAGGCTCGCCCCGAGCCG 40546 29 100.0 32 ............................. GAGCGATCCTCCTCGACGGAGACGTGATCGAG 40607 29 100.0 32 ............................. CGAAGAAGGGAGCCCTGACCGTGGTCAGTGCT 40668 29 100.0 32 ............................. TCCAGCGTGACGGATCCGGTGGCCCCGTAGAT 40729 29 100.0 32 ............................. GGCTCGGACGAAGGCCTGCGCGCGGCGGACGG 40790 29 100.0 32 ............................. ATCGGCGGCACGCAGGTCGGCGGCGGCGTGCA 40851 29 100.0 32 ............................. TCCAGCTCCGAGTACGTCTGGTCGACGGACAG 40912 29 93.1 32 ...............G...........G. GGCCTGGACTCCCTGGCCGGGAAGATCTACGA 40973 29 100.0 32 ............................. ACGACGGCGACCGTGTACCGGGCACCCGAGCG 41034 29 100.0 32 ............................. CACGTGATCGAGGAGCGGCTGAAGCACTTGAC 41095 29 96.6 32 ............................T GCCACCTCGGTCGGCGCGATCCGCTCCGCCGA 41156 29 89.7 32 T..............T............T CCACAGGGCCGACAGCGGCGACCAGACGGCGG 41217 29 96.6 32 ...............T............. ATCGGCGGCACGCAGGTCGGCGGCGGCGTGCA 41278 29 100.0 32 ............................. GCCGGAGGCACCACCTACATCGGCCAGTGCAC 41339 29 96.6 32 ....................A........ TCGGTCAGCACTCCGTTCGTCTGGTGCGAAAT 41400 29 100.0 32 ............................. CTGCGTCTCAGGACGCCGGTCAGTAACGGGGT 41461 29 96.6 32 .....G....................... GTCAGGCCCACGATCAGGCCCTTGCCGATGTC 41522 29 100.0 32 ............................. AGGGCCATGTACTCCTGGGCCTGGCCGTAGTA 41583 29 96.6 32 ........T.................... GCGCTCATCATCGGCCCCGAGGGCAACGGGCC 41644 29 93.1 32 ................A........G... CCGTTCGCCAGCTGCGCCGTCGCGCCCAGGGC 41705 29 93.1 32 T.......T.................... CCCACCCCACATGCGCCAGAGGGCCGCTCCGA 41766 29 100.0 32 ............................. GGCTCCTCGTTCTGGAACACGACCCCGTTCTT 41827 29 100.0 32 ............................. GGCATCCAGCACCGGCCCACCAGCGACGCCGA 41888 29 100.0 32 ............................. CAGCGCACCGTCGGCCGGCGCGAGCTGCGTAA 41949 29 96.6 33 ......G...................... GATCTCCTCGGCCCGAGCGTAGAGCTCGGCACC 42011 29 96.6 32 .............T............... GGATGGACGCGCTGGCCGAGCAGCCGGATCGC 42072 29 96.6 32 ...T......................... AAGGACGCGCCGGCCACCGTCCGGGACTCCAG 42133 29 93.1 32 ....G.....T.................. TCGGCCGCCCAGGGCAGGAGGACGCGGAGCCG 42194 29 100.0 32 ............................. CCGGTCGGCACGACGATGACGACCACGGACAC 42255 29 96.6 32 ...........................G. AGGAGGATCTGCTCGAGCTCGCCGACCAGGTA 42316 29 96.6 32 .............T............... GTACTGGGGTCGATCTTCCCGCGCTGCCACTC 42377 29 96.6 32 ...........T................. CCGCTCACTACCGGCACGGTCACCGACAAGAC 42438 29 96.6 31 ...........T................. AGCGACGCTGTCAGGTGACGGCCTCGGTCGA 42498 29 100.0 32 ............................. GCGAGGGCCTCGACCTTCGCCGACACGGCGAG 42559 29 93.1 33 ................A.....G...... GGCGCCGGTGGAGAAGTGGCCGGTGACAGACAT 42621 29 100.0 32 ............................. ATGATCACCCCGTACCAGCCCGAGGACTTCAC 42682 29 100.0 32 ............................. GCTGCACCGCTTCTGGAAGACCGGGAACGCGT 42743 29 96.6 32 .............T............... GTGAAGATCCAGGACTCGGCCGACAATGTGAC 42804 29 96.6 32 ...T......................... AAGGCCTGGCGCGGCGCGATGGGCACCGACGC 42865 29 93.1 32 ...............G........T.... GACACCCGCGCGAGCCTCCCTGCCGCCATGTG 42926 29 96.6 32 ...................T......... CGGAACACCTGGCACTCGGCCTGGGCGCGGTC 42987 29 100.0 32 ............................. TCGTCGGGGAGTCGGGGCTTTCCACGGTCGGG 43048 27 89.7 32 .............--............G. TGCTTGCCCAGGTCGACCAGCGAGGCTGCCAT 43107 29 89.7 32 ...............T.........TT.. GGCGAGTTGTACGGGGACGCGGACGGCAGCAG 43168 29 100.0 32 ............................. TTCCCGGTCGTCGTCCGCCGGCCGCTCGAAGC 43229 29 96.6 32 ........T.................... GCGATCAACAACAACAACTCCAGCTACAGCTA 43290 29 100.0 32 ............................. CACGGAGGTGACATCAAGGCGCAGGCCGCCTA 43351 29 100.0 32 ............................. GCCACGGTCCTGTCGTAGCCCGCGTACACCAT 43412 29 100.0 32 ............................. AGTACGCCAAGTCCGAAGCCCTTGGCCGACTC 43473 29 100.0 32 ............................. ACCAGCCTCGACGCCGTCGCCAACGATGCCCG 43534 29 100.0 32 ............................. TGGGGCGCCTACCACTGGGGCGCCGACGACGA 43595 29 100.0 32 ............................. TCGAAGATCACGCTCCCGGCGATCCCCCTCAA 43656 29 100.0 32 ............................. CCGGCCGGCTCGATCGTCGTCTGTGGCTGCTG 43717 29 100.0 32 ............................. AAGAACTTGGACGTACCGCGCCGCATGTACTT 43778 29 100.0 32 ............................. GGCCGTTGCCCCAGTACCAGCGCAGCCGGGCC 43839 29 86.2 32 T............T..AT........... CAGGAGGAGCTCGAGCGGGACTGGCTCGACAG 43900 29 100.0 32 ............................. CATCTCGACGACGACCGGCTCGCCATTGCTGG 43961 29 96.6 32 ...A......................... TCCCGCTCCAGACCCTCGAGGATGTCCGGCCA 44022 29 89.7 32 .....G.......T..............T GGCAGATCGAAGACGACCGTGGTGTTGCCGTC 44083 29 100.0 32 ............................. TCGGGGATTGGGCGGGCCATGGTGCCGTCGTC 44144 29 96.6 32 ..................C.......... TCGACCGCTTCACCCCACGCCTGCGTGATCCG 44205 29 100.0 32 ............................. CGGTCAATCCGCGCGTTGGATCGGGCCGTCTC 44266 29 96.6 32 ........T.................... ATGCCGTTGTACTCGCCGATCCAACGCGTGAA 44327 29 100.0 32 ............................. GACCGCGGCGAAGCCGTCTGCGAGGAAGAGGA 44388 29 82.8 32 .................G......AGC.A GTGGCGTCACGCATGATCTGCGCGGCTGGATT 44449 29 86.2 32 ...AT...T................T... AGAGCCTTGGCGGTCGGTCCGGGGATCGGATC 44510 29 82.8 0 ....T...T......T........T...T | ========== ====== ====== ====== ============================= ================================= ================== 97 29 97.7 32 CGGGACACCTCCGCTCGCGCGGAGCCGAC # Left flank : GAAATTCGGATCGGAATCGTATCGGCAGATCAAGTGTATGCCGATGACGACACAATTAACGCGGGGAAGTTCCTCGAAATGGTCGTCAAGCGGCTCCGCCGCACCATCATCCTCGACCTCAACGGCCAGACCGTGAACATTTGTGCACCACTCGAGCCGTAGGTCACGGTCTCAGGCAGGGTTCGTCTTTTGCTGGTTCACCCCACAATCCGGGAAAGCGGTGAGGGCCAAGCTTTTGCGTCCAAACCTGTGACACGGAAGGTTCACCGAGTGGTCGGCGTGGACGAGTACGCCCAGCGCAAGGGCCGTGTCCACGGAGCCGTGCTCGTCGGGAGGCGGACATGCTTGCGGCCTGGCTCGCCGAGTGGCCCGGCATCGAGATCGTCTGCCGTGACTGTGCACCCCTCTTCGCCGAAGGTGCCAGCCGCGACGGAGGCGGGCTGGTCCAGTGGCTGTTGGCGGCGACGCTGGTCAATGGCATCGGCGGTCAGCTCGGTCGA # Right flank : GTGGTGGTCGAAGTCTCGCGGCTGGTCCGGCAGTTTGTCGGGGTTTTGTTGTCAAGGTGCGTGCGATGCGGGGCGCGCTGGTGGTGAGGTTACCGGTGTCGGGCGGGCTGTGTTTCTGTGTGGTGGTGCGGTCTTGGGGTTGTGTGGTGG # Questionable array : NO Score: 3.15 # Score Detail : 1:0, 2:0, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CGGGACACCTCCGCTCGCGCGGAGCCGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-10.10,-11.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [3-37] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [33.3-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.37 Confidence: MEDIUM] # Array family : NA //