Array 1 122480-123432 **** Predicted by CRISPRDetect 2.4 *** >NZ_LFLM01000001.1 Campylobacter fetus subsp. testudinum strain 12S02842-30 contig00001, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 122480 30 100.0 36 .............................. AGCCGCTAAGCTCTGTTACCACTGTAAGCGTTCCTG 122546 30 100.0 36 .............................. ACTCCTAGCTCTTTTAACTTACTCATTTTATCTCCT 122612 30 100.0 36 .............................. CTAGTTTCTCGCTTTGTTGTTGCTCAAGATTACCTA 122678 30 100.0 36 .............................. TCTCTAGAATCTCTATTTTAAAATCTTCATTTTCTT 122744 30 100.0 36 .............................. AGATAAATTTAGACCTCGCAGCTGAAATTTATAAAA 122810 30 100.0 36 .............................. ACTTATAAAAACTCTTAGCCCGTTTAGCGCTAGTTA 122876 30 100.0 35 .............................. TCAACCCCCCCCATTCATATACTCCACAGCCCTTG 122941 30 100.0 36 .............................. ATTGTAAGCTTTTAAGGCTTGTGTTGCATTATCATA 123007 30 100.0 36 .............................. GAATAGCGCAGCAGGGTTATTTACAGGGCTATTAGG 123073 30 100.0 35 .............................. AGTGGCGTGAGTGTGGATCTAAAGCCTTTGCAAAA 123138 30 100.0 36 .............................. AGCCTATTACGAGGTTATCGGTAACATCTATGAAAA 123204 30 100.0 37 .............................. CTAGCTCTACTATAGTATCAAATGTTCAATTATTAGC 123271 30 100.0 36 .............................. TAAACTTTTAAGATCGGAAAAAGATTGGACTCAATA 123337 30 100.0 36 .............................. TGGAAAAGAAATTAATGGAAATGACAGAAAGCGACT 123403 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ===================================== ================== 15 30 100.0 36 GTTTCAACACAAATATTGTCATTAGCAAAC # Left flank : CTCTTTGAAATATCTTGATATATCCTTGCGTCGGCTTAAAAGCTGTTATTAGCCTGTCGCCGTCAAATGTTAAACAGTCTTTGAAACTTGATTAAAGGTATCTTTTATATATTCTAAAGCGTCTATAAAAGTACCTGTGAATTTATGATTAGTTTGCGGTACTTCAAAATCGCAGATCTCATAGAATTCTTTATACTCTTTTGCTTCATTTATGTATTCAGTTTCCGGGGCAAAGATATCAAATATACGAGCTATTCTTTTATCTCTTATCTTTGTAATAGGTCGAATTATATCTAATTGGCTATCGCCATTATCTATGTGAGATTGAAGATCTATAAACCACTCTATTTCATAAAATTCTATAGTAAATTTGCGATTTTCCATTTTATCACCTCTTTTTTATCATATATTGAAGCATTTTTAAAGTAACCAAATGCCTCTTTTTTATTTTGGCTAGGCTTATAACAAGTCACTATCTCATTTGCATTAAAAAAGAAATT # Right flank : TATTAGAGTTTGCTACTAAAATATTAGGTCTATACCA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAACACAAATATTGTCATTAGCAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [75.0-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.27,0 Confidence: MEDIUM] # Array family : NA // Array 1 52-1133 **** Predicted by CRISPRDetect 2.4 *** >NZ_LFLM01000031.1 Campylobacter fetus subsp. testudinum strain 12S02842-30 contig00031, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 52 30 96.7 36 ...............G.............. TATTCACCAATCAATCCAGAATAATCACCAGAACCT 118 30 96.7 36 ...............G.............. GTTATAAACAAACTTGAGCAGGAAAATACCAGCTTA 184 30 100.0 36 .............................. ATTACCGTAAAACTTTTTTTCCACGCTTCAAAATCA 250 30 100.0 36 .............................. TGAACAATGGGATAAAAGTCCAAAAGAGCACACAGA 316 30 100.0 36 .............................. TAAACACTCTCAACGCCAAATCTTGGCATATTATCT 382 30 100.0 36 .............................. GGCTTTCATCTATCATTTCAAATTTCCTTTTTTTCT 448 30 96.7 33 .............................T TGTTTCTATTGATAATAAAATCTCCAGGTGTAT 511 30 100.0 36 .............................. TTTATTAGTTTGTTTATCACGATAGAAACTATGGCA 577 30 100.0 36 .............................. CGTTTAAGTGATAAAAAATCTGATGATAAATATACT 643 30 100.0 35 .............................. GCAGATAGAAAAACAAGAGCTGGATTTAAAACAAG 708 30 100.0 35 .............................. TTCCATCGCCGTCGCTGTCTGCTTCGTTTGTGGTA 773 30 100.0 36 .............................. AGTATAAACTCGTTCAGAAATTTGTGTATTTCCACC 839 30 100.0 36 .............................. ACGGAAATTTCGTTAAAAGTCTTTGAAGTTTTAACG 905 30 100.0 37 .............................. AAATTATCATAAGCTATTTCTGCGCCTATGGAATACC 972 30 100.0 36 .............................. CTTATAAGACTTTTAATATATTCTACTGATACATTT 1038 30 100.0 37 .............................. CTAAGACTTACACCTGTTTTTGATACATTAGAAAACA 1105 29 73.3 0 ..........C....AGC.C..-..A...T | ========== ====== ====== ====== ============================== ===================================== ================== 17 30 97.8 36 GTTTGCTAATGACAATATTTGTGTTGAAAC # Left flank : GATTTGTGTTGAAACATATGATTAATACCACTTAGAACAAGGATATCTCCTG # Right flank : TCACATAGAGCTCCAAAGTAGCAACATTCAAAACGCTAAGAGTATAAATGAGAAAAAAGCAGCTTCTGCGTGGAGAAGTGAGCCTTTTTATGGTAAAATACTTCCAGCAAACTTTGGGCTTCCGCCGTATCATTTTCGTTGTAGAACTGAGCTAGTACCAGTATGGATAGATGAAGAAGAGATCGACGGTGTAAAGATGAAAAATACAAGCCCATTAAACAAAGATGAAGCAGTTAAGCACATAGACAAAACTGGAGTGGAAAGAGTGCTTAGTAAGCAAAACTATTTTGGTGAGAATAACCACTCTAAACCATTGTACAAAAGAGTTCCTAAAAGCGATGTTGTAAAGGCTTTAAACTCTATAAATACAATGGCTAAAAATAAGGATAATAAATATATAAACGCCTTTAGTGACAATGGGTATTTTATAGTTTTTAATGGCAATGAGATAGTGACTTGTTATAAACATAAAGATGGTAATAAAGCTACTTTTAATTATT # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGCTAATGACAATATTTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 1 6104-4500 **** Predicted by CRISPRDetect 2.4 *** >NZ_LFLM01000034.1 Campylobacter fetus subsp. testudinum strain 12S02842-30 contig00034, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 6103 30 100.0 36 .............................. TTTATTTCGTTTTCAGGGTTAGCGTAAATCTTAGCT 6037 30 100.0 35 .............................. TCCGGGCTTCTGCCATAAAGCTTTTTAATAGCATC 5972 30 100.0 35 .............................. TGCTAAGCGCGTTATTAAAGCTTTCTGCGCTTGTT 5907 30 96.7 35 ...............G.............. TTTTCTTTTGCTGATTTTAATAGTGATGTTATTAA 5842 30 100.0 36 .............................. TAGGATATACTTTTGTATTTAATAAACTTTTCTTCT 5776 30 100.0 35 .............................. TTTTTGGTATGCGCTCACCCTCTTTTAAAAACTCC 5711 30 100.0 37 .............................. AATATGGAATTTAAAAAAAGACTAAAGGAGTTAAAAT 5644 30 100.0 35 .............................. AAAAAAGGTGCTTTTTGAAAGCGAAGCAAGATTCC 5579 30 100.0 36 .............................. AAAATACTATCTGTGTAATCCTCTATTGTTCCGCCC 5513 30 100.0 36 .............................. GAATGTAGCAAGTAAAACAGGATTATTTAGTGGAAA 5447 30 100.0 36 .............................. AGTCCTCCATAAATGAAAACGAAATGGCTACATATA 5381 30 100.0 37 .............................. TTCTCGATACAGGCAGATCGAAAAATTTAACAAATTT 5314 30 100.0 36 .............................. CACGTTTGTTTTTTTATCCTAACCATTTATTTTGCT 5248 30 100.0 36 .............................. ACTACAGGTACATTTATAACATCTGTTAAAAAAAGA 5182 30 100.0 36 .............................. TAAAATCCAACGTAATAAGGTAGCTTTGTTTCTACC 5116 30 100.0 36 .............................. GATATCAAAACAAGATTATTGAAAAAGGAAATAGAA 5050 30 100.0 35 .............................. TCTGATCCTATTATTTTTGACGATTATAAAATTTC 4985 30 96.7 35 .............................T AACAAATAGATTGGTTTTGCCGGTTGATATCGTAT 4920 30 96.7 36 .............................T ATCTTGTGCAAAAAGGTTAAATAAGTTGCTAAAATC 4854 30 93.3 35 ............................TT TTGCCTAAATGTTCGGTTGCTACTCATCGCATCTA 4789 30 100.0 36 .............................. ATGACTACAAGTGATTTTCCATTGTTGCTTAAAAGT 4723 30 100.0 35 .............................. GATATATAAAAATCTTGTTCTTTATCGCTTAATTT 4658 30 100.0 34 .............................. TCTCTTCGATTACCATTAATTTTTATTTTATAAA 4594 30 100.0 35 .............................. AACTTAAGGAGATAACTGATGACAACAGAAAAAAT 4529 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ===================================== ================== 25 30 99.3 36 GTTTGCTAATGACAATATTTGTGTTGAAAC # Left flank : CTTATTAAATAAAAAGGTGCTTATAGTAGGTAGTAA # Right flank : TTGTCGAACGCCTATTCTACCACTTCTAAATAACCAACTTGAAAATACACTTTATAAAAAAGCTGAAATTTATTAAACTATTTTTCAAATGGTAAATTAAAATAGTAAAAAATATAATTTTGAAAACTTAGGCAAGAGGTTATTTATATAAGATATATATAAGTATATATAGTATATAATAAAATAAAAAGGATAAACTATGAAAAGTTACTGCTTGAAGTTAGATGATGACACATTTGCACAATTAAATCAAATCGTAAAAAATAGCAAAACAACTATGGCTGAATTTATCAGAAATGCATTAGATCAAAAATTAAAAGAAACCAAAGGTTCGCTATCATACAGGCTAACTACGCTTAGTTACTGCGATAAAAAAGAGAGCGACGAGATACTAGATAGTCTAAAACATCTAAACGACGACGAGTTAAAGATAGCCAAAAAAGAAACCATAAACTTATGAAGCTAGAAATCAACTATACCAAAGTTTCTATAAAGTTTTT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGCTAATGACAATATTTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA //