Array 1 446-811 **** Predicted by CRISPRDetect 2.4 *** >NZ_MNOI01000356.1 Neisseria meningitidis strain S00-1280 13-124_contig666, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 446 36 97.2 30 ........G........................... GTTTCTTCCCATATACTGCTGTTCAAACCG 512 36 100.0 30 .................................... CTTCCGTGAGATACATTTCCCAATCTTCTT 578 36 100.0 30 .................................... TGATTTGCTCGACAGGTGAATAGCCATAAA 644 36 100.0 30 .................................... AATTTAATACGGCGACCATCTCGTGCCAAG 710 36 100.0 30 .................................... TCATCAATCGCCCACTCAAACCCAAGCATA 776 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 6 36 99.5 30 GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT # Left flank : GCTCATGAGAAATCCCCTAAATGTCTTGGTGGGAATTTAGGGGATTTTGGGGAATTTTGCAAAGGTCTCATTTTGCAAGATTTTAGTTTAATCATCAAACAGGGAACAGCAAAAATCCCCGCTGCAACGGGGATTTTTGTTCGGCTCTCGCCTGTGTGATTAACTTCACTAGGAGAAGCTAAAATGCTTAAATTCCTTATGCGTGGGAAAAAGTTGCTGCTGTCCGTTGAAGTGAACCACAAGTTCATTTTAGCGGTTGCTTTGCTGTTAAGTCAATGCAGTAGCTAACCCGACCACAATCAAAAAAACGCAAGTTTTCCGCCTACTCTGTGAGTGGGCGGTTTTTTCTTATTTCAAATCTGTGACACAATATCTGTCGCCTTTCTTGCCATAATTGCACTGTGTCTCAATGACTTTAACGCACGTTCGCTTATCGCAACGGCTGG # Right flank : ACGGCGGTGGAAACGGTTTTCATAAAATTTGTTG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: F [matched GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.40,-0.90] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [53.3-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0.41 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 1 35-994 **** Predicted by CRISPRDetect 2.4 *** >NZ_MNOI01000101.1 Neisseria meningitidis strain S00-1280 13-124_contig136, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 35 36 100.0 30 .................................... GCCTCACAAATATCGTCAATGCTTGCGCGA 101 36 100.0 30 .................................... TGCCACTTGATGTTTTAGCCATAGTGTTCT 167 36 100.0 30 .................................... TGCGAAGCGAACACCCTGAACAATGCCGAC 233 36 100.0 30 .................................... CCGCAAAGCAGCCGAAAAAGCCGACAGGAA 299 36 100.0 30 .................................... CATGCCGTCGGGCGGTGTTGTAAATTTTAA 365 36 100.0 30 .................................... TGACAAATAAAGCACGATTGTTGCAAAAGG 431 36 100.0 30 .................................... CCAACGGATAAAATTACGCCCAAGCACCTG 497 36 100.0 30 .................................... GTATTGAGCGTCAAGTACTCGCCATTCGAG 563 36 100.0 30 .................................... TGAAGGTTCGATAATTCGACCTGAAAAACG 629 36 100.0 30 .................................... TCACTCTAAAAATCCGATTCTACCACCGCT 695 36 100.0 30 .................................... TTGGCTCGTCTGCTGCCGTCAATCGTGCGC 761 36 100.0 30 .................................... TAGATTGCCTCATATACGCCGAGCGGGTAG 827 36 100.0 30 .................................... CATACAGTTCATCTTCACCTGCAATCAGGG 893 36 100.0 30 .................................... TGCTAAGGTTTAATTGGCATTTTCTTTTAA 959 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 15 36 100.0 30 GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT # Left flank : CAATACGGCGGTGGAAACGGTTTTCATAAAATTTG # Right flank : TACCCCAACGGGAAATCCTTATTCTATAAGGATTTCCCGTTTTATTTAGTCTGAAAAAATGGGCTTAAAATAACAATAATTGGTCTGAATTGACCTTTTTTTCTTGGGTTTTCAGCTCGCCCAACAGCAGTTTCATGGCGGCATATTGCTTTTCTGTTATCTCCAAACAGCGGATTGAGCCTTCTTGCGGAAGGTTTGCACATAGTCTATTGTGGTGTTTTTGCAACGAATCGCGGCCTTTGACGATACGGCTGTATACGGAAAGCTGGAGCATTTGGTATCCGTCTTTTAATAAAAACTGGCGGAATTGATTGGCGGCTTTGCGCTTTGCCGCCGTGATAACCGGTAGGTCGAAGAAGACGATAATCCTCATAAATTTGGCCTCACTCATATCGGTATTCTTTCAATGGTAGGATTTCAGGCAGTTTCAGTTGTTTGGCGTTTTTATCGGTTACACCGGCTTGAAATGACGAAACCATTTTGTCGATGGCAGCCAAGGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: F [matched GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.40,-0.90] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [35.0-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.27 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //