Array 1 17820-16998 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAGOC010000029.1 Escherichia coli strain 59/2017 NODE_29_length_61198_cov_19.894565, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 17819 29 100.0 32 ............................. CAATTCCCGCAGCGCCTGCCGCAGTATTCACC 17758 29 100.0 32 ............................. TTGAACGATTTTGACCTGCGCCGTTTTGAGTC 17697 29 100.0 32 ............................. CTGACGCAACGATTGACCGTGCCGCCGGGTTG 17636 29 100.0 32 ............................. CTGACGCAACGATTGACCGTGCCGCCGGGTTG 17575 29 100.0 32 ............................. CCGCCGTTATATGGAGCGATTCCGGTTTGGTA 17514 29 100.0 32 ............................. CGAATTTTGCACACTACGTCGCTGAGGGTAAA 17453 29 100.0 32 ............................. CATTGCCTTTGCAGCGTCTTTCCGATCATTCA 17392 29 100.0 32 ............................. AACGTGAGATACGCCTCCCAGCGGCGCTCGGT 17331 29 100.0 32 ............................. CCGTCAAACAGTATCACCGCGTTAACGCCCGC 17270 29 100.0 32 ............................. CCACACACGTCGAGCTGGTGGGGGTTAATGCT 17209 29 100.0 32 ............................. ACACCTCTACTGACGTTCCTGAACAAGAAGAT 17148 29 100.0 32 ............................. CTGGGCGAGGGAGAAACGCCAGCGGAGCAGTA 17087 29 100.0 32 ............................. CCTCTCAATTTGTAACGTCTGCAATGTCAGGC 17026 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================ ================== 14 29 99.8 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTACA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATGTTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 96615-95060 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAGOC010000016.1 Escherichia coli strain 59/2017 NODE_16_length_105312_cov_19.417341, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 96614 29 100.0 32 ............................. TGGATATCTCCGATTCCCTGGCTAAATACGAG 96553 29 100.0 32 ............................. TCGCCCGGCGTCAGCAGATCAGCGGCCTGCCA 96492 29 100.0 32 ............................. CAGATCGCGCAGCGTCCCGACATCCTGCCGTA 96431 29 100.0 32 ............................. TCAAACATTTGCGCGTTACTGCGTGGATTTGC 96370 29 100.0 32 ............................. TCACGACGCCCGCCGCACGTTCGGCAGTGTGG 96309 29 96.6 33 ............................T GGCCTGGATTTTTTCGAACACCACCCGCTCGTT 96247 29 100.0 32 ............................. CAAATATATTTTGCGTTAATTATTCGAGGTAA 96186 29 100.0 32 ............................. GCAAAATATTCAATCACCCCACTGGGTAAACC 96125 29 100.0 32 ............................. GAATACCGATTCATAACGGCGGAAATGTGGAT 96064 29 100.0 32 ............................. CCTACGCCATGTGGATTAGTCCGGCGTTTCAT 96003 29 100.0 32 ............................. TACCGCTGTTCATGCCGGAAATTGACCGGACC 95942 29 100.0 32 ............................. CAGCTCGCAGCGCTCGGAACGTGGCGCTATAG 95881 29 100.0 32 ............................. GTTTCTCATATTTCGCGTCAATCTCCACCAGG 95820 29 100.0 32 ............................. GACACGGATAACAGCTACCTGCAAAATTTAAT 95759 29 100.0 32 ............................. TTCTCCAATCAGCAGTGCCCATCTGATATGCA 95698 29 100.0 32 ............................. TCAGGGGAATTGCGATATTCAGGCAGCGTAAC 95637 29 100.0 32 ............................. ACGAGGTACAGTGGTGCAAAAACAAATTATAG 95576 29 100.0 32 ............................. GCTCCGGTTTTAAAATAAACCCGGCAAAAACG 95515 29 100.0 32 ............................. TTAACGCGAAAGCGTCGGCGGTCAGTCGGCAG 95454 29 100.0 32 ............................. GAATATCGGGTGCCAGCCTGGACGCTGGCCGA 95393 29 100.0 32 ............................. ACGCGAATCGGCGGTTTTGAGCGGGTAGCAAA 95332 29 100.0 32 ............................. GCAAACAGCTAACCACCGCCGGGGCGGTTTCC 95271 29 100.0 32 ............................. GCGTCTCGAGCGCGGGACGATTCAAAACCAGC 95210 29 100.0 32 ............................. CCAAAGAAGAACAACGAGCCAACTGGTTTCAG 95149 29 100.0 32 ............................. CGGCTATGGAATTTATGGAGAAGTTTGGTTTT 95088 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 26 29 99.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTTGCCGCAGGTGAAATTGAACCGCCACAACCTGCGCCGGATATGTTACCGCCAGCCATCCCCGAACCTGAAACGTTGGGCGATAGCGGTCATCGAGGACGCGGCTGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCGCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCAGGTTGTGGAAATGTGGTCATGGCCTGGGCGACAAATACTGAGTCTGGTTTTGAGTTTCAGACCTGGGGCAAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //