Array 1 6759-8769 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJBRX010000052.1 [Ruminococcus] lactaris strain MSK.17.77 AOMHIIPG_52, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 6759 32 100.0 33 ................................ ATTGATGATCTGTTGGTTGAGATTTACAAATTT 6824 32 100.0 35 ................................ TCCGATAGAACAGCAAATTGATAATCACCAAATGG 6891 32 100.0 35 ................................ CAAGGTATACTGTGCAATCATTTCCTTCCCCCTTT 6958 32 100.0 33 ................................ AGAAAGGGAACAAGGTGATTATCTGGCCGATCA 7023 32 100.0 34 ................................ TCGTCACCAGTGATGACTTTATAAATCGGGTCTA 7089 32 100.0 34 ................................ CTCAAGATTCCATTGATCAGGCACGGAGCAAGTT 7155 32 100.0 32 ................................ TGTTCCTGGATCCGTCAGCAAAAGGGCTTGCG 7219 32 100.0 34 ................................ AGTAACTGGCTCTCTAGCTCATCCATGTCATATC 7285 32 100.0 33 ................................ TTAAACTCTTCGGTAGAAATAGCACTGTCTTTT 7350 32 100.0 34 ................................ TGATTTGCAATCCATCAGACTTTTTGCTCCCGTC 7416 32 100.0 35 ................................ ATGGAAATGAATCAGCTTATCGACTGCCGTGTCAA 7483 32 100.0 34 ................................ ATCCCGTAAAGACGGCAAAGACAGCGGCAGGAGA 7549 32 100.0 35 ................................ CTATTTCATCAGTTACTGATCGTTCTGTAAATACT 7616 32 100.0 33 ................................ TTGCATTATAACTATAACATACTCAAAATATAA 7681 32 100.0 32 ................................ TCGTTCTGCCCGTCCGTGTCTCCAAGCTCCTG 7745 32 100.0 35 ................................ ACCTCATCGAGAGCATTTGCATAGATTGATATTCC 7812 32 100.0 34 ................................ TTCCCAAAGCTTCCGGCATATCCATCCTGTCCAC 7878 32 100.0 33 ................................ ATGAATCCATCCCCTGCCGGAACTACATTGACC 7943 32 100.0 35 ................................ AGGCAAAAGAGAAGAAAGTCTACCATCTGCATTTC 8010 32 100.0 34 ................................ TCCAAGCGTCTGACTACGCTCGGAAATGACCATC 8076 32 100.0 33 ................................ TGCATCATGACTTGCCCTTTCGGCTTCCGCCAC 8141 32 100.0 34 ................................ ACGATCGGAACGAGGGCTGTAACCAATGGGGTCA 8207 32 100.0 34 ................................ CAGCTTTTTCCAGTGCAAAAAAGGAACGGGAGCG 8273 32 100.0 35 ................................ CTGCATGGATCGCCACCTTTTCGTTCAATAGGAGA 8340 32 100.0 34 ................................ TCGGAAAAATAATACCTTGTGGTCTCTCCGTTGT 8406 32 100.0 34 ................................ GGCACTTCCACGCTGATATGCTCCCGGATGTACG 8472 32 100.0 35 ................................ AGCATATTAACAACATCCAGTTCGGAGAAGGCAAG 8539 32 100.0 34 ................................ CAGTAACTGTCAACCTCGCTCCAATGCAGTCCGC 8605 32 100.0 34 ................................ CGAAAGAGACTGCCAAACCATCAGGAGGACACTA 8671 32 100.0 35 ................................ AGCATCAGGATACCTTTTACGGTGTATTCCTGACC 8738 32 96.9 0 ...........C.................... | ========== ====== ====== ====== ================================ =================================== ================== 31 32 99.9 34 GTCACTTCCCTTGCGGAAGTGTGGATTGAAAT # Left flank : CCTGTATTTCTGTGGAAATGAGGTGGAAATATGCTGTTGTTGATTACATATGATGTAAATACAGAAAATGAAGCCGGAAAAAAGCGACTTAGAAAAGTAGCCAAACAATGTCAAAACTATGGGAGAAGAGTACAGAACTCCGTATTTGAGTGCATTGTGGATCAGGCACAAAGTGTGACGTTAAAATCTTTGTTAACAGAGATTATTGATGATAAAGTAGATAGCTTGCGATTCTACTATCTTGGAAATAATTATAAGACCAAGATAGAGCATATAGGTGTAGAACGAGGAATTGCAGTCGATCAGCCTTTATTCTTATAATTTGCAGGTGCGAGTGTCTAGCATACATAAAATTACCGGGAGACTCGCACCTGTAAAAATAAACAAATTTGAATGTGCTTTTTGTATAGACAGAGTATTTCAATAGTATACGAAAGTAAATTCAAATATATTTATAGATATTTCATAAAAATAGACAGATGTTTTTGTGAAATATTGCA # Right flank : TATTGAGCCGTTCTACATATGGGAATCCGAGGAGTAAGTGCTATCATCATAAATATTATAAAGACTTACTGAAATCCTTGGATTTGCCTGATATTCATTTTCACCAGTTGAGAAATACCTATGCAACCATTTTGCTGAAGAATAGTTTTAATTCAAAAGGTGTTTCGCATTTGTAGGACATGCCAAGGAAATTATATCCGTAGATGTCTATGGAGATACACAGGAAATTATAGAAGACTGTCTGGACGTACTGGAACCATTTATTGAAGAAGTTATTCCAAAAGAGAGGAAAGATCAGTATTATGATTATTCAGAAATGATTGAAATAGACTTAATTCTGGAGGAATATTTCAACGCAGCATGATAAAAAATAGAATAGTAGTGATAGAAAAAAGTACAAATAAGAATCGAACGTTTGTACTTTTTTCTTGCGTTAATCTATATACTTTCAAAAATTTATTTGATATAATAGGGACTGTTACAAGAACAAACAGTAAAAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACTTCCCTTGCGGAAGTGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.80,-3.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [81.7-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.37 Confidence: HIGH] # Array family : NA // Array 1 31664-32957 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJBRX010000007.1 [Ruminococcus] lactaris strain MSK.17.77 AOMHIIPG_7, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =================================================== ================== 31664 29 100.0 35 ............................. AATTTATCCAATGGATATTTCTCCTCATATTCTCC 31728 29 100.0 47 ............................. TTGCGGTGCCTAGCCCCGCGTATAAAAGTCATCATTATCAGATTTTA 31804 29 100.0 42 ............................. AAACTCATATTCTTTCTCCTTCCAATTTTGAATGAAAAACAG 31875 29 100.0 43 ............................. TTTGCAAATTCACTATCCAATACAATTGCAAACTCTTTATCAA 31947 29 100.0 42 ............................. TTTCGGCAGCAGCAATCTCACTTGCCAGAGACTTTAAAAAGT 32018 29 100.0 49 ............................. TTGTTTGTCATTTCGTTTTGCATAATATGCCTCCTTATACTCTCCATAT 32096 29 100.0 41 ............................. CATCTGCAGGGAGAATGCATTACCAAGATAAATCATGGCAA 32166 29 100.0 51 ............................. ATATTATAAGTGGCCCATTCATCATCTTGAGCAGAGATGTTATCTCCATAA 32246 29 100.0 37 ............................. ACAGGTTATCGGATGTTCCAATCTGCATGTCTAATTC 32312 29 100.0 45 ............................. GATTGTCGGGAATCGTGAAAGTTAGTCCTTTTTCAATGAAGTGCG 32386 29 100.0 37 ............................. TCACCTAAGATTGTCATAATAGAATGTTTCATATTGT 32452 29 100.0 39 ............................. TATCCACACCATCCACAGCAAAGCCTTCATCAAGGATTT 32520 29 100.0 48 ............................. TAGCATACCCAAAACTTTTGGACTGTCCAATCAAGGTTGTCCAAGTAC 32597 29 100.0 34 ............................. ATTGTACACAAATCTGTCATTGAAGCGATCTGAT 32660 29 100.0 39 ............................. CAGTTTCTTCTTTGAGCTCTCTGACGGCACCATCGATTG 32728 29 100.0 45 ............................. ATGCTGTTTTCTCAGAAGTTGTTGCATCATCAGATACATCTTCTG 32802 29 100.0 32 ............................. ATTTCCCGATCATATATTTTTTTCATCATAAT Deletion [32863] 32863 29 96.6 37 .....................G....... TGAAAAATCAGCACACTTAGAAACATTCCAAGTTTCT 32929 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= =================================================== ================== 19 29 99.8 41 GTCGGACATTACCTATGAGGAATTGACAC # Left flank : TATATTACAGCATGGTATGGAATTTACAGACTTTGCGGTGAAAGAAAGTATCTTGATTTCCTGTATCAGACAGGTCTGGGAAGTAAAAATTCGCAAGGCTTTGGAATGTTTGAAATTTTGTGAGATGAAGGGAAAAGGAAGGTGCCTGAAACGGAGGCACTTTTCTTTGTGAAAAATAGTAAGAAAACTGATAAATACGAAAAAGTCTTAAAAAAGTCCGTCGACCTTAACTCCTTGGAAATACTGGGAATTTCAGCGGTGGAAAATGGAAAAACATCTATTTTAAACCTCAAAACACCACTTTTTAGAGGAAATGTGAAAAAAAGTCCGTCGACCTCAGGAAGAAAAATCGAGATATATAAAAAGGCTTAAAAAGTGTTGAATTTATAAGGAAAATCAGGATATGAAAAAACTGGTGTCGACGGACTTTTCGGCTGAAAATTGATTGATTTTAGGGAAAAAATGAAGTATGATGATAGCAACAGCTGATAAATACGGCT # Right flank : CGTGTACGGTATTAGAACTTTCCAATTTGTTTTATCGTCGGACATTACCTTTCCTACAAGGATTCCTTGTGCCAATACATAAGGCAAAGACATTATTTTTATTTGAAATCAATGAATGCACCGACCTGTTGATTGTAACTACTAACTTTCAACTTTATGACATGGAGAAACGGATATGAGTTTGTGTATTGAGGAAATACTGTCAGACAGTAATCTTGCGGCAGCTAGGGCATCATTTAAGGGAAAAAATGACAGCAGTGGGATGGATGGTGTACGGGTATCTGAATTGGGCGAATACTGGAATGTCAATGGTGATAAGATTAAAAAGACGATTTTGGAAGGCAAATACAGTCCGGGGCTGATCCGGCAGCAGGAAATTGTGAACCAAAAGGGAAAGAGACGGACGATCTCGCTGATGAATACAGTTGATCGTTTTATTTTTCGTGCAGTTTATCAGCAGATGGCAAAGCTGTGGGAAGGAGAATTCTCAGAGCATTCTT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:-0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGACATTACCTATGAGGAATTGACAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.17%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.60,-0.70] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA //