Array 1 1315-1617 **** Predicted by CRISPRDetect 2.4 *** >NZ_CDOK01000122.1 Capnocytophaga canimorsus strain Cc11, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ================================= ================== 1315 36 100.0 30 .................................... ACTACTAAACCTGTATTACAATAGAAAATT 1381 36 97.2 30 ...G................................ ATTTCAAAGGACTGTATCGTTTCCCCATTA 1447 36 97.2 33 ...G................................ GTGGTAGCAGTTGAGCAGGGGCAACCAATACGG 1516 36 100.0 30 .................................... GTGATGGAGTACAAAAAAGTGGACTATCCC 1582 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ================================= ================== 5 36 98.9 31 GTTATGATTACCCTCCAAAATGAGAGCAGTTCCAAC # Left flank : CCAAAATTTTCTACTACTGCTTTAATTTTATCAGAGCCTACACGCAAATCAAAGACTATAACATTATAATCTTTGATGAGAGTGTACTCTCCACTTTCTAAGAGCTTTTCGATAATCATAAAATAAATTCCGTATCCCTCAGCACCCATATTCACCCGTACGGAGAGAAGTTTCTCATCGTTACGAGCATTTCCGTCGTGACTGAAATAGAAATTATTTTTACTCATATTTATTTTTTATTGTTTTTACCTCCCCCTCCTATGGGGAACTCTTCGGGGCGTCCCCCCTCAGAACTAGGCTTTTGAATTAAAAACTTCAATCCATATCTTACTCAATATGTTAAAAATCAAATAATTACAAATAAAATTCTTATTGATTTCCACACGTGTTGTCCCAATAATACAACCCAAAAACATAATTTGCAACACTTTTAACTCAAAAACAGAAAAATAAAGACCTCCCGATAAAGTACATCGGGAGGTTTTGCGTTAAAAACAGAC # Right flank : CCTCAATGCCAAAAAATGAGTGTATAAAACTGTCTATCAGGAGTGTAATATCATATATTTTACTTCATCAGTGCTTCTTTTTCCCTTTTAAATACTTCTACAAAGTACTCGGCATAGGTTTTTCCTTTTGCTATCTTGCCACATTCTTCTTGGCAATAGTCCCAAAATTTTTTAGGCAATTGGTTGTGTGCAAATTTATTACGAATATAGGTTAAAACAAAAGCTTTTTGTTCTAAATCGGTTGCTTTTTGTTTTAGTTGATTAATGTCCACATCTTCAGGTTTAGTATTTAAGTTGAATACCTTATAGCTCTCCACATCTTCTTTTTCTTTTTCTTTTTTAACTTGCTTTAAAAGTCCGTTGAGAATATAGTACTTGAAATTTTGATTATCCCCTTTTTTTAATATTTCCTTATCTTTTACCTTTTCCAAAATATACTCCTCTATAAGATGGACTTCCTTCAGCAGTTCTTCTCTTCTTACTTTTTCATATTGTTCTAT # Questionable array : NO Score: 6.01 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTATGATTACCCTCCAAAATGAGAGCAGTTCCAAC # Alternate repeat : GTTGTGATTACCCTCCAAAATGAGAGCAGTTCCAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: F [matched GTTGTGATTACCCTCCAAAATGAGAGCAGTTCCAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-1.40,-8.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [61.7-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.64 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 1 9808-10242 **** Predicted by CRISPRDetect 2.4 *** >NZ_CDOK01000164.1 Capnocytophaga canimorsus strain Cc11, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== ============================== ================== 9808 47 100.0 30 ............................................... CGGTGGGGCCGACGAGGGGATGGGACTGCG 9885 47 100.0 30 ............................................... CTGTCTTCGTAACACCAAGCGAATGAAGGT 9962 47 100.0 30 ............................................... ACAAGCGCGTTACTGCCTCAAATGAATTTC 10039 47 100.0 30 ............................................... TAACAACATATTCAACCAACATTCCTTTTT 10116 47 100.0 30 ............................................... GCCCTTACTAATGGTAAGGTCAGCTTTTCG 10193 47 87.2 0 ..................A...............T.TG..G...C.. | T,A,T [10227,10234,10239] ========== ====== ====== ====== =============================================== ============================== ================== 6 47 97.9 30 GTTGTAACTAATCACAAAGTTACGGAAAATTGAAAGCAATTTACAAC # Left flank : ACAAATGCTATACGGGCGAAAAAAGACAAATTTCTTATCCTAAAATGTTATGAATTCCGAACGATTTAACGCTTATAGAATTATGTGGGTAATGGTTTTATACGACTTGCCAACCGAGACCAAGGCAATGCAAAAAGCAGCCAATCTCTTCCGAAAACGCCTGGAAGATGATGGATTTTCTTTATTTCAGTTTTCTATCTATTTGAGGCACTGTCCGAGTAGAGAAAATGCAGAAGTACATAAAAAACGAGTAAAAATGATGCTTCCCAAATACGGGAAAGTAGCCGTAATGACGATTACAGATAAGCAGTTTGGTGATATGGAAATATTTCATTCTAAAGTACGCGAAGATCCGCCACCTACTTACCAGCAACTCGAGTTATTTTAGAAATAGAATGAAAAAAATGGATTTACTTAGCCCGATTTATTCTTTTTTTGCTCAATTTTTTATTTCTAAAAACAAAAATAATCCTCTGACAGACAGAGGATTATTTTTTGAG # Right flank : CTGAATACTATTGAAAAAAAATAAAAACTAATGAAGTAAAGCAATTTACAACTTAAAATTATTTGTACTATCTTTGCACCATAATCGCTTAAAATCCGAAAAAGATGAAAACAAGTATTTTAAAATTATCGTGTTTGTTTGCCGTTCTATTTCTAATCTCTTGCAGTGGTAGTGGTGGAGGAACCGCAGTAGCGGTGGCTCCAGAAAATCGAGAAAGTTTTACAGAAAATATGTATTTTAAATCTCTTGACCCAGAGAAAGAATATAATTTTGAAGGAGTTATCAATGAGGTTAAAAAAAAGGAATTCAAAACCCTAATAGAAGCCATAGCTTCTATTTCATCAGAAAGTAGGTACAATGAAATTCTAAAAAATCACAAAGATAACATTACAAAAGTCGAAAAAATTACCAAAAGCAAATTCTTTGTATATGACCATAGGCATATTTACTTTACTCCTATTGATACCAATGTTCTGAAAGGAAATATTACCAAAGGGTAT # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAACTAATCACAAAGTTACGGAAAATTGAAAGCAATTTACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.21%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.30,-1.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-80.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : NA //