Array 1 18-778 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYKW01000720.1 Salmonella enterica strain BCW_5096 NODE_720_length_796_cov_4.13618, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 18 29 100.0 32 ............................. CGTGTGGCAGTCTGGTCAAGTAATACGGTATA 79 29 100.0 32 ............................. CGCTCCCTGACGCCGCGTTTGTCCCCTGCAGC 140 29 100.0 32 ............................. TGCTGGCGGCAAAAGAACTCGCTAAATGGGAA 201 29 100.0 32 ............................. CAGTGCGGCAGCGCGCAATCGAGACACGCCAT 262 29 100.0 32 ............................. AAAATAACAACATTATCAGTGTGAAAAGTCTC 323 29 100.0 32 ............................. TAACCATGGCTAAGAAAAAAACTTACAGGACT 384 29 100.0 32 ............................. AGATATGAAAAACGTAAAAATTTACACCGCCA 445 29 100.0 32 ............................. CGTTGTCGTTGCTGGACAGAACTCCGGGGACG 506 29 100.0 32 ............................. TACGGGCATGGACGGCTCGTACAGTTTTGACG 567 29 100.0 32 ............................. TGCTCCGCTTCTGGTAGTGCTTCCAGACCCTC 628 29 100.0 32 ............................. CAATAGGACAGCCATTCGAGCGCCCAGAGTTT 689 29 100.0 32 ............................. GTCAGTATGCACTGCTTGATAAAGTCAGGCCA 750 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 13 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : AATGATATCCGTTTAGTG # Right flank : GTCAGTATGCACTGCTTG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [20.0-15.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.24,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 18-960 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYKW01000678.1 Salmonella enterica strain BCW_5096 NODE_678_length_979_cov_10.1727, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 18 29 100.0 32 ............................. CACATTTCCTCAGTGTGCTTCAGAGGGTGGTA 79 29 100.0 32 ............................. CCGATATCAAAAAAGCGTTTAAACGCCTTGCC 140 29 96.6 32 ............................T TCCTGCGCTTTGGCCAGTTTGGAACCCGCCGC 201 29 100.0 32 ............................. GCACAATTTGTGCTTTTGCAATTCACTTTGAA 262 29 100.0 32 ............................. TGATCACAGAACTGACCGGGTACACCATACCT 323 29 100.0 32 ............................. TGATCACAGAACTGACCGGGTACACCATACCT 384 29 100.0 32 ............................. TAACGCCGTTCTGCATACGCTCTACCGCGCGC 445 29 100.0 32 ............................. GGGAATGTATGGATTTAGAAGAAGAGCTGGCA 506 29 100.0 32 ............................. TGTTCGCGCTAAATAATGCAGTAGGCCGCGCT 567 29 100.0 32 ............................. CCAGAAATTTAAATGGCTATTCCTGGCTGTAG 628 29 100.0 32 ............................. GCGCAATTGCAGTTTGACGCGGTGCTGTCATT 689 29 100.0 32 ............................. TCGTTTGTGGCGTCAGTAATACTATTATCGGT 750 29 96.6 32 .............T............... TTTTTAAATCCGGACAGACCCTGTAACGGATC 811 29 100.0 32 ............................. ATCCGACTGTATGCCCAGCAGAACGAGGGCGC 872 29 96.6 32 .............T............... CACGAGTGGCAAATTGATTTCGACGAAAAACC 933 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 16 29 98.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : AATGATATACGTTTAGTG # Right flank : TTGCATAATCATAATCTGT # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [21.7-23.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 7-704 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYKW01000737.1 Salmonella enterica strain BCW_5096 NODE_737_length_723_cov_4.58728, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 7 29 100.0 32 ............................. AACTAACGTCTATAGCTAAATGTAGAGAAAAC 68 29 100.0 32 ............................. CAGTTTGGAGTCAATGTTATTTCTTCAGGTCA 129 29 100.0 32 ............................. CCTCAATTTTGTCTTCACCCAGCCATATTTGC 190 29 100.0 32 ............................. TCTCGCTGGTTGCTCCAACTCCTGATATGCCG 251 29 100.0 32 ............................. TAAAAATCTTCTTTCATATAACCGTAAGGGTT 312 29 100.0 32 ............................. GTAGTGCAACGCCGGTGATTTTACCAGTATCA 373 29 100.0 32 ............................. GTGCAACAGTTTCTTACCGCAAGCAGTTTGAA 434 29 100.0 32 ............................. ATCATCGGGATTCATTTTGTTGTCCGGGTGGC 495 29 100.0 32 ............................. CGGTGCTCTATGTCTAAAAATAAAAGCGGTTC 556 29 93.1 32 ........T...................C AGCACAATCATTATTAGATGAACTTTCATCAA 617 28 96.6 32 ............-................ GGGATCGCGCTGGCGGTCGCATCCGTTGCCGT 677 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 12 29 97.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : AGGCCAG # Right flank : TTGCATAATCATAATCTGT # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [3.3-23.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0.27 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 26145-23735 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYKW01000016.1 Salmonella enterica strain BCW_5096 NODE_16_length_36577_cov_14.4055, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 26144 29 100.0 32 ............................. GCAATTTCCGATATGCGACTTGGGACACCAAT 26083 29 100.0 32 ............................. ACACCGACTCATCCGTTGTTACTCCTGGTATT 26022 29 100.0 32 ............................. CGCTACGCCCTGCCCGGTCTCGGTCTCGGTCT 25961 29 100.0 32 ............................. CACATCGGGAGCCTCAATCAACCCGGCACGGA 25900 29 100.0 32 ............................. AGTTCGATATCCCTTAACGGTACTGCCGTCCT 25839 29 100.0 32 ............................. CCTCACGCAATTGAGCCTCTTTCTCGACACGC 25778 29 100.0 32 ............................. TTCATCACCGTCAGCAAGCTGCGATCCGAAAT 25717 29 100.0 32 ............................. CCAGCTTGCCGATATCAACGACCTATACCTGT 25656 29 100.0 32 ............................. GTTAAAATTTGGGAGGATCGCCCGGGACTCCC 25595 29 100.0 32 ............................. GGACCATTGAAACGGCGCTGACATCAGATGTT 25534 29 100.0 32 ............................. TACCGAACGGCTCAAAGTATGTTCCAATTGAC 25473 29 100.0 32 ............................. GTTGAAACCAGCATTCCTTATGCTGTGCTGCC 25412 29 100.0 32 ............................. GAGATTTTTCTTGTCCCGCCACACCAGCGGCT 25351 29 100.0 32 ............................. TGCATCATCTGATTCGTACGATACGGCAGGGT 25290 29 100.0 32 ............................. GGCTGACAAACGAGCAGGTTGAATTTGTCCTG 25229 29 100.0 32 ............................. CATGGTCTGTACCGCCTGCATTTCTGCATTGT 25168 29 100.0 32 ............................. GGCCGCACCGCTGGCGATCACGATTAATCAGC 25107 29 100.0 32 ............................. CGCCTCGCAAAACTGGTCGGGGTTTTTCCCCA 25046 29 100.0 32 ............................. TTCGTGTTCTAACAGCAGATCGCTGATACGGC 24985 29 100.0 32 ............................. CCAGTAATGAAACGCTGGCAACATTGACGAGC 24924 29 100.0 32 ............................. CGCAGACGGCGCAATTGGATTCGGTGATCGGG 24863 29 100.0 32 ............................. TGCTCGAGCCGACATTGATCCCGCAAAAATAC 24802 29 100.0 32 ............................. GGATGCCGATAGCGGTCAGTAATGAAAATGGC 24741 29 100.0 32 ............................. AAGATCCTGTCTCTTTTGTGCGGAGCGCCGAC 24680 29 100.0 32 ............................. TTCGTTTGATCTCCACTCACAACGGTATTGAA 24619 29 100.0 33 ............................. GACAATTAGTTCCGACAGACGCCGGTATTAAAT 24557 29 96.6 32 ............T................ CCCACGCGCGGCCGCACTGGCCTCGCGGATAA 24496 29 100.0 32 ............................. TCCGGGCCGCCGCTACCACCACTCAGCGGCGT 24435 29 100.0 32 ............................. CCTAATGGTGATGGGGCGTTTAATCTTATCTC 24374 29 100.0 32 ............................. TGGTTTAATAGTATCGGGCAGCATTTTACCGA 24313 29 100.0 32 ............................. ATCTCAATTAGTCCGTTTCCGGTTGAATCAAT 24252 29 96.6 32 ...C......................... GGGTGTACCACGGCATGATGACGGCCAGCCAT 24191 29 100.0 32 ............................. ATTGACAACAGTCTGCTTACCCGAGCTGCTCC 24130 29 100.0 32 ............................. TCCTGTCGGCGGTACGGTGGACATCCCGCAGG 24069 29 96.6 32 .........A................... CCAGTCAGCCACTGTTCTTTGCCGTACCTTTC 24008 29 100.0 32 ............................. GGGTTATAACCGGGATACCATCCGCTCCAACC 23947 29 100.0 32 ............................. CGCCACGTTTTTTGCATTTTATTGGCATCATC 23886 29 100.0 32 ............................. GGCAACTGGGCGATCATCTGGGCGCTGTTTAT 23825 29 100.0 32 ............................. GTGCTCCAGTGGGCTGCTAAGGGGCTTGGTGG 23764 29 100.0 0 ............................. | A [23737] ========== ====== ====== ====== ============================= ================================= ================== 40 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTAGAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : TTTCCCCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCAGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [48.3-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //