Array 1 286440-287729 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACTII010000003.1 Listeria seeligeri strain FSL W9-1172 NODE_3_length_293129_cov_77.606827, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 286440 36 100.0 30 .................................... ATCTAGAATTTGAAATTGTGTTCCAGCAGC 286506 36 100.0 30 .................................... AAGCGAAAGCAACGAATAAATATAGTCAAA 286572 36 100.0 30 .................................... GAGATGAAATTACATGCTGACTATCGCACG 286638 36 100.0 30 .................................... TACTTTACCAGTTGATGTTAAGAAAATGAT 286704 36 100.0 30 .................................... ATATTCCTAATTTTGTAGTAGATAAAGCTG 286770 36 100.0 30 .................................... CCAAAAAAATGTATGAAACATATCATGAGT 286836 36 100.0 30 .................................... TAGAAGGTGCTCCTGTTTGATTACCTCTGA 286902 36 100.0 30 .................................... TTTTAAACTTACTTTTGTACCAAGCTCGTT 286968 36 100.0 30 .................................... CCCACCGCGTCAATTGCGGAGTTTAGTACT 287034 36 100.0 30 .................................... CGAAACGACACGAAAACTAACCAAAACAGG 287100 36 100.0 30 .................................... TCTCCCAGATAAAATCGCCACGTTCTATGT 287166 36 100.0 30 .................................... CGCAAGTGGCTGTTTTTGCGAATGTTTGTC 287232 36 100.0 30 .................................... AAGCGGCGAACGATAAAGCTAAAAAAGATT 287298 36 100.0 30 .................................... TTGTTCCTGGTTAAAATACACAACGTTATC 287364 36 100.0 30 .................................... TTCCTGTAAAAAATAATCACCTGCAATCAA 287430 36 100.0 30 .................................... CTGCTTGTACCAATCTCTCTCTGAAGCGTG 287496 36 100.0 30 .................................... ATCCGCAACGGAGCTTATCACGGGACAATC 287562 36 100.0 30 .................................... ATCGTCTTTATCAAAGATACCAGGTAACGA 287628 36 100.0 30 .................................... TAAAAATAATAATGAATTAACGGTTATTGA 287694 36 97.2 0 .....................A.............. | ========== ====== ====== ====== ==================================== ============================== ================== 20 36 99.9 30 GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Left flank : TGATAAGCTGACTGCAACAATTAGCGAGTTGATAGGTTACGAGCTATTGGAGCACGAGCTGGATTTAGAAGAAGACGAAATTACAGTCATTGAATTATTCAAAGCTTTAGGGATAAAAATAGAAACAAAAAGCGACACCATCTTTGAAAAAATAATTGAAATTGTACAAGTTTATAAATATTTATCAAAAAAGAAGCTGTTAGTTTTTATTAATGTATGTGCTTATCTTACAAAGGAAGAATTGTTAGAACTAAAGCGGTATATTTCTTTAAATCAAGTGAAAGTTTTATTTATTGAACCTAGAAAAATAAAGGAAGTTTCACAAATAGTTTTAGATTTAGATTATTTTTTACATGTGGAAAATGACGTTTAAGAATCGAATGCTCTTTGAAAATAAAATATATTTTATTTAACCCATTAAAACAGCATTCAAAATTGAAATCTTGCTATGGATGAGTAGTGCGATTACGAAATCTTAGAGGATAAAAAAATCCTACGAG # Right flank : CAGAGAGGGTGAACTACAAAAGTAATATCCTTTACATCTGTTTTTTTCTATATATAGTGGTAAAACTAGTTGGTTTATGTTATAAATTTTCTACAAAAAGATCACCTCGTTAGTTTGTTGTTTTGTCACTTTTATTCTAACAAAGGTGGTCTTTTTTGTGTATTAAAAAATGGATTTGATTATTCCTCTCAAAAAGAAATTCTCAAATCCATTTTTCTACTTACTAGGATTTATGTCCCACCCTCTTTTTCTATACGGACTGCTGTCTAAAACAAAACACCGAAGCAATTATCAATAACACAATCGCGGGAAAAGCTAAAAGTGCAGTAATGGCAAAACATGCGCACCCAATTATGCCTAAAATATGACCAATAATAGAAATCCCAGCTTTTTTAGATTTAACTAAACCGATAATATGAATAATAAGTCCAATAGCGGCCATTACGTAAAAGAAAGCACCGACTCCGCTTGTTTGTGATCCATCTCCGCCTGAGAAACTT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.30,-0.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 218965-219315 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACTII010000004.1 Listeria seeligeri strain FSL W9-1172 NODE_4_length_273665_cov_70.042922, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 218965 29 100.0 37 ............................. TTTTTTACTCCGCTGGCATCAACAACAATATCCGCTC 219031 29 100.0 34 ............................. ATTGAGCGCCTTAATCAACTCTTCGGGTGTTACT 219094 29 100.0 34 ............................. AAGGTACATATTTGCTTTTAAAAAATGGATTATC 219157 29 100.0 36 ............................. TACTTTTAATTTTCGGTCCTGTAAGCCTACTTTTAT 219222 29 100.0 36 ............................. CCGTCAGATTGATTATAATAGATTGTCCGTTTTTCT 219287 29 96.6 0 ............A................ | ========== ====== ====== ====== ============================= ===================================== ================== 6 29 99.4 36 GTTTTAATTACTTATTGTGAAATGTAAAT # Left flank : CGCAACAACTTCAGCCGATGTCCTGCTAGAAAAAGGCGCTGTAGAAGTCATTGCCTGCGCAACCCACTCCGTTATGGCTGGAAACGCTACTGAACGCTTACAAAACTCAAAAATCAAAGAAGTTATCACCTCTGATTCCATTGATCTACCAGAAGATAAACAATTTGATAAACTAACAACCATCTCCATCGGCCGCATCCTAGGCCGCGCAATCGAAGGCGTTCAAGAAAACCGCTCATTGCATCCGTTATTTTAAGAAAATCTATAAGCAGAGACTCAAAATTGGGTCTCTGCTTTTTTGTGCGTTAACATCTGTCGACCGTTAGTAGCGTAGAAAACAAGGGGAATCGACAGAACATTGAATTCCTTTGTGGGAGAATAGGTTTGGTGGGTTTTGAGTTATGAAATTAAAGTTTGGTGCTTTGATTTTAAGAGGTTTTTTGGAGGTCGACAAAAATAGGCGCTTGAGGTAAGATTGGAGTAAGAGGAAAAGTGAACGG # Right flank : TGTCTCCCAGTCCACTTGCTTCAAGTGACCAGAAGTGTTTTAACTACTTTTAACCATCCGAAAAACACCAAAGAGGAGGAAACACTCATGAAAAAAGTATTTATCCCGCTACTTTTTCTACTAATCCTACTAGCTAGTTGCTCCGCGCCTGATGAAAAATTAACAAAAGACACCAAGATTTTTAAAGAAGGCGTCATCAACGCGGATTATCAGGTTCCAAAAAACCTAGCAGAGCTTGAATCGAACAGTGAAGATATCGTAAAAGTGAAATTACTACAAAATAAAGAAATTGGTAAAGGAAATAACACAATAAGTGAAGTAGAAATTATCGAGAAATACAAAGGGAATTTCAAATCAGGTGCGACAATCGACATTTCAGAACCTTGGCTTTTAAACACAGGAGAATACCAAGCTGTGGAAAACTACATTGCACTTGAAAAAGGTCAAGAGTATATCTTGTTTTTAAGTGGAGGACATGACGGGGATAAAGTAAGTTCTAT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAATTACTTATTGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: F [matched GTTTTAGTTACTTATTGTGAAATGTAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.20,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 2 225550-227060 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACTII010000004.1 Listeria seeligeri strain FSL W9-1172 NODE_4_length_273665_cov_70.042922, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 225550 29 100.0 35 ............................. GAGATTGACAAATACCGTTTCACTAAACTAGCACA 225614 29 100.0 34 ............................. CACATCTCCGGAAACGATGCTGAAACTGGGATAT 225677 29 100.0 35 ............................. CAACTCGGAAAAATTTCACTCGATAAGTATGGGGA 225741 29 100.0 35 ............................. ACTGCTAAGATGATGACTGCTCCTTTCACTTTTAA 225805 29 100.0 36 ............................. AGACATATTTATTAAGAATACAAAGAACGGAACACA 225870 29 100.0 35 ............................. CTTTTTGTTTTTAAGCGAGGTGTACCTCCCTTTGT 225934 29 100.0 34 ............................. ACAAGATCGTGACTGCTGAGCCTGTTTCTGCCAA 225997 29 100.0 35 ............................. CGACCCCAGCGGGATAGATATGAGTAGGGATATCG 226061 29 100.0 35 ............................. TTGTTTATGACCTCATCGTCATCCAATGGCTTATC 226125 29 100.0 37 ............................. TATTTATAACGCCAATTACCTTCTTCAGTCGCTACAG 226191 29 100.0 36 ............................. GTTTGAATGCTCTGATTAAATGCTGTTTGAGATTGC 226256 29 100.0 36 ............................. TCCATTCTGAAGTGAAAACAAATTATTTTGTCTTTT 226321 29 100.0 35 ............................. TTAGATCAAATAGATTCAATTCCTCTGATGGCACC 226385 29 100.0 34 ............................. GAATACGGGCGAAGCATTACCGTCGTTCGTTTGT 226448 29 100.0 35 ............................. AATTTAATTTAATAGGAACATTCATTACAGACGCC 226512 29 100.0 37 ............................. GTTTTAGTCAGCAATGCATTAATTACTTTCATACTCG 226578 29 100.0 36 ............................. CAGATACATCTACAACACGCAAAAGCGTCCCAACAG 226643 29 100.0 37 ............................. TAGTCATCATCTAGTTTTATTCCCATCACCACATATC 226709 29 100.0 35 ............................. AATCGAACGGATATTCCAATACTCGAATCGCCTTG 226773 29 100.0 36 ............................. CCACGTGGGGAAAGTGTACCCTGCCCTGTTACTAAT 226838 29 100.0 36 ............................. CCAGAAAAGTTGCATATAATCTTTCCGCTTAGGTTC 226903 29 100.0 35 ............................. AACGATGAAAAAGCACAAATAGAAGCATTAAAATC 226967 29 96.6 35 ....A........................ ATATACGGTATCCGGTATACTCGCCGTCCCATTCT 227031 29 86.2 0 ........C....C..A...........G | T [227057] ========== ====== ====== ====== ============================= ===================================== ================== 24 29 99.3 35 GTTTTAACTACTTATTGTGAAATGTAAAT # Left flank : TAAAAAGTAACCGTTCCATCTTTTTTCTCTTTTGTATCCGCTTTGCTCGTTGTTGAATCATTCCCACAGCCCGCAATCAAAAGTAAAGCGCAAAACATCACCATCAATTTCCAAACATTTTTCTTCATCCTTTTTCTCCTTTTTTCTATAAGTTTTTAGCAAAATAAAAACCCAGATAAATCAAAAAATAGCCCAAAAGCCATCTTCCAATCCATCTAGGTTATGCCCAAAATAAGTAACATTCCTGAGTGAGGTATTTGTTTATAGGATAATTTTAGCACAGATAGTAAGCGTTTACAAATTTGCGCAATTTCTGTCGATGTATGGTAGCGTAAAAAGTACTGGAGACCGACAGATTTGCGGGATTCGTTGGGAGAGAATGAGAGTGCGGGGATTTTGGTTTTGAATAGTAATTTTAGGAAGGTGGAAAGCCGATTTTGAGATAGGTCGACAAAAATAGTCTTGTGAGGTAAGATGGGAGTAGGGATGAAAATGGACGG # Right flank : GCCCTTCAATCATGCTAGTAAAGCTGCAGAAATAATTATTGCGAATTATAAATTCATCTAGCAACTAAAACATAGATAGTAGCATTATCATAAATTTCCCAGACAATAAAAAATTAAAATCAAATTCTTTACTAGTTTTAAGGTATAAATCTTTTTAACAAAAAGTGAAAAATTTCAATTAATCATATAGCAAATGTTAAGTAAAACACTAGTATTTTCAGTGTTTTTTTTTCGCTAGCATTCACTCTTTTTTTGTGTTAAATTAAACACAAGCAACAGATGGGGGTGACAAAAATGAGACTAAAAATAAATTGTGAATTCGAATCCAACATAATACCGAAAGACTACAGAGGTAAAATAGTCAGTTTATTCAAAACAGGAATTGAGAAATCTAGTCCAGAAAGATATGGAGATTTATTTGGTAGTAATAAGCGGAAAAATTACACTTTTTCGATATACTTGCCTAAACCTAAAAATAATAAAAATGAAATTTATCTTGA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAACTACTTATTGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: F [matched GTTTTAACTACTTATTATGAAATGTAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.10,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.27 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 3 235669-236930 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACTII010000004.1 Listeria seeligeri strain FSL W9-1172 NODE_4_length_273665_cov_70.042922, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================== ================== 235669 29 100.0 37 ............................. TTAAAATAAACATTGAGAAAACCTAATCCCCCATCGA 235735 29 100.0 34 ............................. TTAGAAGGATTAGATTTAACTAAAGAAGAACGTG 235798 29 100.0 36 ............................. AACCTTATCTAGATGGGCTAGCGGAATGGAGAGAAG 235863 29 100.0 34 ............................. AATGGGAGATAATGTATATGGGTAAAAAGTCCTT 235926 29 100.0 37 ............................. AAATTGGAAAAATGGGCTAATGACATCCGCATCATGA 235992 29 100.0 35 ............................. CATTTTAAGCTAATTTGACAATATATCTGTATAAA 236056 29 100.0 36 ............................. ATCTGTCATTTTCATGTGTTTTAACAGGTTGCAACG 236121 29 96.6 35 T............................ CTAGTTAAATCTTTGGGTAAAAAAATATCATCTGG 236185 29 96.6 40 T............................ TCAGTCGTTCGGTTGTAGTAACATAGCGCTCTACTTCTTG 236254 29 96.6 36 T............................ GCCGGAACAAAATTAGAAGTTGTGTACGGTGAACGG 236319 29 93.1 35 T...............A............ CAATATGTGGCGGATTGGATTGTCGATAGTAAACG 236383 29 96.6 34 T............................ GTGATTGAAGTTCTTCCTAAGTGTTCTACAACAC 236446 29 100.0 36 ............................. ACAGGAAAGGGAGAAACGTCATTAGCTGGGCTAAAG 236511 29 96.6 35 ........................C.... AAAAATTTAGTAACTGCGCATGATAATGCGGTCAA 236575 29 100.0 37 ............................. ACCTGAAACAGCGAGCGGGACAACGGGAAATTTCACC 236641 29 100.0 36 ............................. GAAAGTGTAGAAAATGACGACTACAAGGGCTGGGGA 236706 29 100.0 36 ............................. ATGCTTACCATACAACCCGCCATAGCCGTTTTTTCC 236771 29 100.0 36 ............................. CCTGTCCCACCGACGACGAGCGCATGCGGATTAGCA 236836 29 100.0 37 ............................. GTGGTCACAGCGTTCTTGTTGCCAGCTGGTGAGCCCC 236902 29 72.4 0 .......C.G.....CA.....CA...CC | ========== ====== ====== ====== ============================= ======================================== ================== 20 29 97.4 36 GTTTTAATTACTTATTGTGAAATGTAAAT # Left flank : CTTCAAAATTTGGTGGTGAACATATGTATGTAATTTTAATTTATGATATTTCTGTGGAAAACGGTGGGGCAAAGGTGTGGCGCAATGTGTTTAAGATTTGTAAGCGATATTTAACACATGTCCAAAAGTCTGTATTTGAGGGTGAAATAACGCCAGCTCTTTTAGTGAAATTACGGATGGAGCTAGACAAATATATTCGTTCAGATATGGATTCAGTGATTGTCTTTTCCAGTAGGCAACAAAAATGGTTAGAAAAAGAATTTTGGGGACTGGCTGATGAAAAAACGTCGAATTTTTTCTGAATAAATATTTCTGTCGACCTCCAGTAGTGCAAAAAACACTGGAGGTCGACAGAAACGTGGGAAGCCTTTGGGGAGAATGGTTTTCGGTGAATATGCTTGTTTAAGTCGAGAAAATAAGATAGATCTCACCTGCTTTTTACGGTGGTCGACAAAAACAAGCCCGTGAGGTAAGATGGGAGTAGGGAAAGATATTGGCGG # Right flank : CCCACCCATCCTTAAAGCCAATAATCTGCTCTAAGGGTTTTTTATTCGAAAAACCCCACCCCCAACCTCCCATTTTTTTCGTCCAGCGAAAACCGTTTTCGAAATACTTGTAACCGCTTGCAAGAGTGGGGCTCTATAACTATAATGAACGTAGTAATTGAGTCAGATATAATATTTTTTCAAAATTAGCTAACTGGAAAAATAGAAAACGGAAAAATGGAAATATTTAATCATGTTTTCATTTTAATCTAACAAAAAGGAGAGCTTAAGTATGAAAAAAATCGTATCAATCGGTTGTGTTGTGGGACTTTTAATGCTTTTAGTGGGGTGTGGAAGTGAAGAAGCATCGAGTTCAAAAGTAGAGTTTTACACGGATAAAGGTGGAGAAAATGTTGGTATTTTGAATTCTATGTCAGATCAGATTGAAAAAGATGGGGGCGTTGGGTTTAAAACTGTAGGATATACGGATGTGACATCTTATGAGACAGCGGTGCAACAGT # Questionable array : NO Score: 6.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAATTACTTATTGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:85.71%AT] # Reference repeat match prediction: F [matched GTTTTAGTTACTTATTGTGAAATGTAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.20,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [46.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //