Array 1 1419-2947 **** Predicted by CRISPRDetect 2.4 *** >NZ_VSTP01000019.1 Ligilactobacillus salivarius strain HN24_2 scaffold19, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================================ ================== 1419 36 88.9 40 AGA..........T...................... GGAGTGATGCAAATGGAAGCTACATACATAGCTTATGACG A [1422] 1496 36 97.2 39 .............T...................... GTAAGACAAGACCTTACTTGGTTATGAGTGCAGAAACAG 1571 36 97.2 39 .............T...................... TGTTCTACCCAGCTTTCATTATATCTCAAAAACGATGAA 1646 36 97.2 39 .............T...................... ACTTGGTACGTTGATTGAGAAAGCGTTGAGAGAATACTT 1721 36 97.2 39 .............T...................... AAGGTGGGATAACATTTATTGGTTAAACTCCAAAGTTTA 1796 36 100.0 39 .................................... ATCAAGCCAGAATGAAAGAGTTTAAAGTATCTAGATTTT 1871 36 100.0 33 .................................... ATCGAAAACGAGGCTAATAAGTAATGTTTGGAA 1940 36 100.0 36 .................................... TAGAACTCAGCGAAAAAGGGTCAACCATGAAAACTA 2012 36 100.0 41 .................................... ACAAAGTTTTACTCCAGACTCTGTTGCAAACTTACTCAACG 2089 36 100.0 40 .................................... GTTCAAAGCGAATTTGATAGGCTATCAGATATCAAACGTT 2165 36 100.0 37 .................................... ATAAAATTGCAAAGAAAATTGTTAAAGAAGTAGGAAA 2238 36 100.0 38 .................................... AACAGTGAATTTTTCACTCTCTCTCGAATTATTTTCTC 2312 36 100.0 44 .................................... TTCATTGATATGTTGGTTAAAAATAATGATGGAACGTTTGATAT 2392 36 100.0 34 .................................... ACAAAAGACTAATCATAGTTACCTAGTAAGGGCA 2462 36 100.0 39 .................................... GAAGAATTGAAATTCAATTCTAATCTATTCTATGAGAGG 2537 36 100.0 42 .................................... ATGCAAGAAATCCTGGATGACATCAAAAATCTATGGGTTTAG 2615 36 100.0 41 .................................... TTTAAAGAAAATTTGGGCTATGGCTAAAGCTGGACGTAAAA 2692 36 100.0 39 .................................... AGAAACCTAAGGAGGACAAATAATGCAAAGTGAAAATTT 2767 36 100.0 35 .................................... AAATTAACTAGTTGACTTATAGAAAGGAAGAATCA 2838 36 100.0 38 .................................... ACGGAAGCCGCGTTTTTGATAATTTGACAGTAAAAACT 2912 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================================ ================== 21 36 98.9 39 GTTTTCGTCTCCTATATTCGGAGATATGTTCTTACT # Left flank : TCATTTGAAGAATGACTAGGAGTTACGACTTGGTAAGCCTTAACATTGATATCTTTCAATCTATTAATAGTAAATAGCGCTGACTTCATTTGTGGCGTACCGCTAGACAAATTCAAAATTAGATCTTCATCTTCTTTAGAATATTTTGAAATTATTCCATTTAGTACTTCATACATTTTATCAAAAATAAATACTTCACTATCAGAAATGACTTCATCACTTTTTTCGATCATAGGATTATATCCATCTATAGAATTCAATGCTAACAAAATATTAGTCTCTTTTGATAAAGCACGCTCAGAATATATTAATAATATTTTTTGGGGACGAAATACCCTTACTAAATGTAATAAAGCTCCATCGTGTCTATTTCTTATAGGATCTGTATCACCAATACACGATATTAATGTTGTCATAATTACACCACTTTCTAATTAGTTATCTATATTATATATTATTTTTTCTAATTTTCGCTTTCTCTTGTCTACTTTAATTAAATT # Right flank : TATTCCTTGATCAATTAGTTGATACATCAACAACTATTGACATTTTTAATGGTACCCTAAACGGGCAATAGGTTAACTTAATAAGTAAATAAGTATTATTTGGTCAAAATTCAGACAAGTTTTTATTTGTACTACTATTTCTTCCAATAGTGTAAGTGTATTATAACACAATAAATTGAGGTTTCCTAACAGTTTTCTTTATAGACTCACTTCCTAAAATCGTTATTTGTGAATCATTCACTTCGTTAGGAAGTAAATATAAAGTAATTACACCTGATTTAGGTAATCTATCTTTTAACACTTTAATTACTCTATCTCTAGTAGAATTTTGTCTTACTTCTCTTTCATACACACTAAATTGCTTCATTGTGAAACCTAATTCTACTAATTTCTTATGATATTTAGCTGCTTCTTTTCTATTCTCTTTCGTGTCTCTTGGTAAATCAAAACATACTAATAGCATCATACCTATCTTCCTTCCTCAATGAAAGTCGGTAATT # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTCGTCTCCTATATTCGGAGATATGTTCTTACT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.89%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.30,-6.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [83.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0.41 Confidence: LOW] # Array family : NA // Array 1 45964-47835 **** Predicted by CRISPRDetect 2.4 *** >NZ_VSTP01000006.1 Ligilactobacillus salivarius strain HN24_2 scaffold6, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ==================================================================================== ================== 45964 36 97.2 30 ....................T............... CTATCAATGAATCTTGCAGTATTTCTTACG 46030 36 100.0 30 .................................... AGTGCCGGAATAGCGACATCGTTTGCTAAT 46096 36 100.0 30 .................................... AAAAAAGATTGTTCTTTAAGGTCTGCAATC 46162 36 100.0 30 .................................... CTGTTTAATTTGTCTGTAACTAAGTTGTAT 46228 36 100.0 30 .................................... TTGGATCATTGAAGAGATGATGATCTGAAT 46294 36 100.0 30 .................................... AGTGCTTGAGCTTCACAATTAAGAAAGTCT 46360 36 100.0 30 .................................... CAATGGTCTCAAACGGCGGTATCTCACCTT 46426 36 100.0 30 .................................... CCCGTCATTCTCGACGGGTTTAACTAGAAT 46492 36 100.0 30 .................................... AATGGCTAAATTGACGTTTCCCTTGAGCAG 46558 36 100.0 30 .................................... AAGAAGGAGTTATTACTCAACAACAAGCCA 46624 36 100.0 30 .................................... GATTGCAAGATATGCAAGAATCGGAGCGAT 46690 36 100.0 30 .................................... GGTTGTTTTTGCACAAACAGTATACCACGC 46756 36 100.0 30 .................................... AATGGAGAAAATCAACGTAAAAGAGATAAC 46822 36 100.0 30 .................................... GATTACGAACGACAAAAACAGGCACGCGGC 46888 36 100.0 30 .................................... AATGCATCTGCAATCATATTAAGAATACCT 46954 36 100.0 30 .................................... AAGAAGCAAAGGAAGGCTTGCCTGAACCAC 47020 36 100.0 30 .................................... TATAAGGTTCATGATATATTAGTCGATAAG 47086 36 100.0 30 .................................... TTTTAACCCTAGGCGGTATCTTAAGCATAA 47152 36 100.0 30 .................................... TGAAACACCTAAACCAGCTCCAGCGCCTAG 47218 36 100.0 30 .................................... GATTAACTTCTGGTAAATTATAAGGATTAT 47284 36 100.0 30 .................................... ATTATTCTTACGTGAACATCCAGATAACGA 47350 36 100.0 30 .................................... TTTATTGTTGCACTCTTTTGAGCACACATT 47416 36 100.0 30 .................................... ATTGATTTAGCAGTGAATTTCTGATCAGAA 47482 36 100.0 30 .................................... TTGATAAGCGAACCATTTATCGCCTTTCTT 47548 36 100.0 30 .................................... CATTTTTTGCGAAAAAAGTAACAATTATTG 47614 36 97.2 84 ..................................T. TACTTTCTTTTATGATATAATTTAGGCATAATTTCAGAAGTATATTAAAGATCTTTAGGACTTGGAAAGTCACAGGAGGATTAA 47734 36 91.7 30 ..........C.............A..........T GATCTACGTTACATTTTCTTAATGTTCATA 47800 36 77.8 0 ......T...A.........T...AG...CG..G.. | ========== ====== ====== ====== ==================================== ==================================================================================== ================== 28 36 98.7 32 GTTTCAGAAGGATGTTAAATCAATTAGGTTAAGACC # Left flank : AACAGACCAAATTAGCAAAAAATATATGAATGTATTGATCAAGAAGATTATTGAAGACATCACAGATGTTGAAAGACAAGCAATACTAAAATCAGTAAATGGTTTGTATGATCGTATTCGAGAGGTTTTGTATAAAATTGATATACCTTTACAAGTAGATTATGACAATGATTTAACAAGACTATTTAAGTATTGTCAGGTACATACAGAGGCATTGCTATGGAAAAATGCGTATGATAGAATATCTTCAGATGTTAAATTACATGTGGAACTAAACAGAGAAAGAATTATAGGTCTAACCAATGTCGCACATTATCTCACTAAAGAAGAGTTTCAGGAACTTGTAAATCTTGTTAAGGCGACTAACGCATCAATGTTTATAATTGAATTCACAGAAAAGAATGATCAGAGATTCTTTGAAAACTGTGATAATTACTATATTGATGAGGATTATATTGATTGGTACTAACGAATCGTTAAATTTTGATTATAAAATAACG # Right flank : CTAAAATACAAAATATTTCATAATATTTATAAATCTATCAGAAATTTTCTGGTAGATTTTTTTAGTGTAAAAATTTTTGAGTTTACGATATATTATGGTTGATAATACAATATTATATGGTATATAATATAGTTGAAGATAAGATATAGAAGAAAGTGAGGGATGATGATGAAAATTCAAGTTAGTTCTGATTTATTAGATGGTTTAGTATTAGCGTTATTAGATAAGCAAGATTATTATGGATACTCATTGACACAAGATATGCAAAGGGCAATTTCGATTTCAGAATCAACATTGTATCCGGTATTGAGAAGATTGAAGAAGGGTGGTTTATTAGAGACATATGATCAATCGTATCAAGGGAGAAATCGTAGATATTATCGCATAACAGATAATGGGGAAGTACACTTAGAAAGAATAAAAAAAATGTGGAATGACTATAAAGTTAGTTTGGATGAAATTTTTGAAAAAACTAGGGAGGGGGAATAATAATGAACTCA # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:-0.13, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGAAGGATGTTAAATCAATTAGGTTAAGACC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.70,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [1-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [75.0-85.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA //