Array 1 731389-732296 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP014945.1 Caldimicrobium thiodismutans strain TF1 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ============================================== ================== 731389 30 100.0 36 .............................. ACCTATATCTTTATACAACTTCTTTGCAAAAAACTC 731455 30 100.0 36 .............................. GGAATGCCTCAATATCAATTTTTTCTCTTTTTAAAA 731521 30 100.0 37 .............................. TCGCATCCTCTAAAATATGTAAAACACACCCTAAAAT 731588 30 100.0 38 .............................. CTCTATATTGAAAATTAAATTAATAGCAGTAAAAACAA 731656 30 100.0 37 .............................. ATCTCTTTTAAGAGGTTCTGTCTTTCAGCTTCAAGCT 731723 30 100.0 38 .............................. GCTATAACTCCCGCAAGCCTTTGAGAAAATGGCTCAAG 731791 30 100.0 37 .............................. TCCTTTTTACCAGGGGCTCCTTCTCATCAAGCTCTAC 731858 30 100.0 36 .............................. AGTAAACTATTTTATCAGAAGATTTTTCTAGCTTTC 731924 30 100.0 37 .............................. TAATCCTCCTTTTAGATATACATCAGCGATAAATTTT 731991 30 96.7 38 T............................. CCAGATTAAGAGATGTTGGCATTGATATTTCCAAAATT 732059 30 96.7 41 T............................. AAGATATAATGAAGGTAAAGGATATTTATTCATTTTTGGAG 732130 30 86.7 46 .....A......T....A....G....... GAGATTTTCAAGATTTTCAAGATGTTCAGTGTTTTCAGGATTTTAG 732206 29 76.7 32 ..........C......AT..GG..-...T TATGATTTTTCTGGCTATGACTATTTATTTTT 732267 30 83.3 0 .....T...........A...GG......T | ========== ====== ====== ====== ============================== ============================================== ================== 14 30 95.7 38 GTTTTGAGCCTACCTATGAGGAATTGAAAC # Left flank : CAAACTTTTTACTTTTTCAAGGCTTTTAAGCTTACAAAAGCCCCTTATTAAAAATGGGAATATAGTATTTTCAGGAAGTTTCACTTTTTTTGTAGCCTCTCCTGTAAAGGAATTTATTCAATCCCTTGCTCAGAGTATTTTAACAAGAGAAGTTTTAACCCTTGGGAAGGTGAGGGTGCTTTTGCAGTCTGTTGAGGTTATGAGTCCTCCCAGATATCAGGAAAAAATTTATGTGAGGACTCTTTCTCCTATTACTGTTTATAGCACTTTCAGGAAACCAGATGGAAAAAAGATAACTTATTATTATAGTCCTTTTGAAGAGGACTTTAGGAAGCAAATTTTAGAAAATTTAAACAAAAAACTTAGATCTCTTGGGAGGGAGGCGGATTTAGATGGCTCAATAAGACCCTATAAAGTGAGTTCAAGGAATCAGAGAATTATTTTATATAAAAATATGGTTATTAAGGCTTGGGATGGGGTTTTTGAGTTATGTCTTCCGA # Right flank : TCTTACAGAAGATGTTATAATGATTAAAATTAAGTTTTTCATACACAAAAAACAAAAAGGAGGTGTCTTATGAAAGAAGTGGTTAAGAAGTTTGTAAAGTTTATGAGGAAGATGGAAGCAAAAAGAGTTTTACTTGGTGTTTTAAGTTTAGCAGGAGCTGGATTTTATTTACAGGGATGTAGTTTAGTGCCTGATCCCACATCGTGGTTAGTTGATGATATTTATCATAGAAGGGACTGGAAACATGATGAAATCTCCACACTGGGAGCTTCTATTGTAAGAAAAGACAAAAATACCTATGAATTTACACTTGAATATACTTATTTTAGAAGAGATGATCAAAAAACAGCACCAGCAACTTTAGAAGTCTGGTATAAGGATAAGTCAATTTTTAAAAGAAATGCTTTTGTAGAAATGAAGTTATTTGATAGAGGTCCAATTCATAGAAAAATGCCAGTTCCCACTGAAACTACTTACCACATAAAACTTCCTGTTGTTCT # Questionable array : NO Score: 9.05 # Score Detail : 1:0, 2:3, 3:3, 4:0.79, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTGAGCCTACCTATGAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.20,-0.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-16] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [68.3-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : NA // Array 2 1054382-1054862 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP014945.1 Caldimicrobium thiodismutans strain TF1 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================================ ================== 1054382 36 100.0 44 .................................... CATCCAGCTGTATCAGTGCACCATGTTAAATCCACTCTTTCTAA 1054462 36 100.0 33 .................................... TAAAGATGGATTATTTGTGCAAACACCTATTAT 1054531 36 100.0 39 .................................... TTCTATGGGCATGATTTTGTGAGAGATGAGTCAAAATAG 1054606 36 100.0 41 .................................... TTTTTGAACGAAAGACCAATAATGCATATGATTATTTTAAA 1054683 36 100.0 38 .................................... CAGGCACCACCCAAAAACTCCCCTTCAGCAACTCTCTT 1054757 36 97.2 34 T................................... TCAAATAAAACCGCTTTAAAAGGATCATTCAACT 1054827 36 91.7 0 T................................AT. | ========== ====== ====== ====== ==================================== ============================================ ================== 7 36 98.4 38 GGTTGAAACCTGCCCTACTTCAAAAGGGATTGCGAC # Left flank : TGATACAGGTTTATAAACAAATTTTAAAAAATCAGGGTTGACTTTTTGGAGAAATGTGGTAAGAGATGGGAAGATGGGTTGAAAATGAGTAGGTCTTTGACAAGTGAATAGCGTTTTTTCTTCTTTTGGAGTTTGGGTTTAAGTTAAGAGTTTGGGGCTAAGTTAAAGAGGATTTTTGGGTTGAGAGTAATGGGGAAGGTGTGAGCTTTTTAAAGGTGTGTATAAATATATTAAGTGAAGAATATGATAATTTTTTAGGGACATGAAGGGTTGATATAGCAAGGGTTTTAGGGGGTAATTTTTGGGGTAGGAAATTGAGAATCAATTGCAGTTATAGGGTGAAAAAGTGTGGTTATAAGTTATTGATATAATGGGGAAAATTTTGTGTTTCCCTGGTTTTGGAAGTGAGGGATGATGCGGGTTTTAGGGGGTTGATTTGAAAAATATAGTTTGTGATAAACAATCACAAGGTAGGATTGATGAGCTTTCTGAGGTGTAAG # Right flank : CAGGAGAGTAAAGGGATTGCATCAGAAGGGTAAAGGGATTGCATCGGAAGGGTAAAGGGATTGCATGAGGGGTGAAAAGGAATTGCATAAGGGGTGTAAAGAGATTGCATGAGAAAAGGTAAAGGGATTGCATGAAAGGGAGTAAAGGGATTGCATGTGAAGAGTAAAGGATTGCGACCTATCGGGGCTCAAAATCTTTTGCCCTTATCAAACCTGTGCTAATTTCTGGCTTAATTCAAATAAGACAGCATGGAGTGGTAGAGGATTGCATGGGGGTAATTTGCCAAAAAGTCAGTCTTATTGTGAAAAGCTCGAAATTACTTGCTAAAGGATGCAGATTTAAGTCCCAAAAGATAAGAGGGCAAACAAACACGAGTTTTCTATCCTTGAATAAAAACTTGATGTTTTATTTTCTTAATAACTTTTTATAAAAAATATAAGTTTCCTTTGGACCTAAAAACTTACAAATTATAATAAACACAAAGGCTCCTAAGGGTATG # Questionable array : NO Score: 3.18 # Score Detail : 1:0, 2:0, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGTTGAAACCTGCCCTACTTCAAAAGGGATTGCGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [10,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.00,-4.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.42,0 Confidence: HIGH] # Array family : NA //