Array 1 5635-3658 **** Predicted by CRISPRDetect 2.4 *** >NZ_AGGZ01000037.1 Streptococcus sobrinus TCI-357 contig00037, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== ====================================== ================== 5634 24 100.0 38 ........................ TAGCCGTAGTCTAGCGTAGACCTTGTTTGACTAAGTTT 5572 24 100.0 37 ........................ TTAATGATACGGTGCTTTTCATTTTCCCGTGTAGTTT 5511 24 100.0 37 ........................ TAAAAGAAATGATGTAGATACGTTACTCGAAGAGTTT 5450 24 100.0 37 ........................ TGGGGATAATATCGCCTTTAGTACAATCGGTCAGTTT 5389 24 100.0 37 ........................ TACGACCGTGTCCTCCAATGACAGTTGAAATAGGTTT 5328 24 100.0 37 ........................ CTGAACCTGTTGAGGGGTTGCGTTTACCATAAGGTTT 5267 24 100.0 37 ........................ TAACGTATCATTACGTGGCAACCGAGCCATCAGGTTT 5206 24 100.0 37 ........................ TGCCTGGTTTCCTTCTTTTCGGGATTGGATACTGTTT 5145 24 100.0 37 ........................ TAATCAATCGGTCGATCCATGCCCTAGTCTTATGTTT 5084 24 100.0 37 ........................ TGATGAGTACGACGAACGGTACTGCTATAGTCCGTTT 5023 24 100.0 37 ........................ TACCATCCCGATGATCCTTGAGAGTATTTCTCTGTTT 4962 24 100.0 37 ........................ TGTCAATCCCTATAACAGCAACAACCGTTCAGGGTTT 4901 24 100.0 37 ........................ CAGGTGGACGACTTCTACAGATACTATGTATCAGTTT 4840 24 100.0 37 ........................ TTGTATCTAACATAGCAGGTCAACTTGAACCTGGTTT 4779 24 100.0 37 ........................ CTATAGCTGTTCTGGTTGGTTTGTTCTGTCTGAGTTT 4718 24 100.0 37 ........................ TATGGCCTATTACTCGGCAAATGCCAGTTTAAAGTTT 4657 24 100.0 37 ........................ TTATATTTAAACCGCTTTTCCAAAAACTCATCAGTTT 4596 24 100.0 37 ........................ TGGAGAAGTTCAGCGAAGGAATACGACCAGCCAGTTT 4535 24 100.0 37 ........................ TATCAGTTTCGAGAAAAGAAATTGGATGCACTTGTTT 4474 24 100.0 37 ........................ TTGGGAAAGGCGAAAGAATATTACAGTCTATGCGTTT 4413 24 100.0 37 ........................ CCAACAGTAGATCGTTATTTACCACAATCCCCTGTTT 4352 24 100.0 37 ........................ TGGTGCTGAAGATACTTGGTTCAAGATGAAAACGTTT 4291 24 100.0 37 ........................ TGTTCGCACTAGGGGCTTTTTGTACTCGATTTGGTTT 4230 24 100.0 37 ........................ TAGATTTCTCGCATTTCCAAAATGATTCCTTGCGTTT 4169 24 100.0 37 ........................ TTGTTTAATGGCAAAGATAGTATTTATCGCTACGTTT 4108 24 100.0 37 ........................ TGTTATCACGCATACGGCAAGCCCCCTAAAAAAGTTT 4047 24 100.0 37 ........................ GTTCTAATTGCCTGGCTAAATTTTGATCAGCTGGTTT 3986 24 100.0 37 ........................ CGGGCTTACAGACGCATAATTAAAAAGCTTGTAGTTT 3925 24 100.0 37 ........................ CTAACTTGGGGGAAGATGGTTTATGACCGCTTCGTTT 3864 24 100.0 37 ........................ TCCCATGCTCTGAATTTTGGTATGATTGTGAAAGTTT 3803 24 100.0 37 ........................ TATTTCCTCTCGGCCAAAGCAGTGAAACGGTTAGTTT 3742 24 95.8 37 ..........T............. TGGTTTTGGGGATGCTAACTGGTACGAATACTAGTTT 3681 24 75.0 0 ..........G.....T...GCAT | ========== ====== ====== ====== ======================== ====================================== ================== 33 24 99.1 37 TACCCGCACACGCGGGGGTGATCC # Left flank : ATGAACATACTATCATAGAAATTGCTGCTGTTAAAGTTAGTGGCTTACAGATAGAAGAATTTGGCTATCTTATAAAATATGATAAAGTTTTACCGAAAAATATAGTCTCTCTAACGGGAATAAGCCAAGAACTTTTAAATCAGAATGGAAAAGATATTCAAGTTGTACTTCAGGAATTTCTAAATTTTATTGGAGATTTTGACCTTGTTGGTTATGGAGTGGGATTTGATATTAAGTTTATCAATAATGAGTTAAGAAAATTGGGCTATCCTTTATTGGAAAATAAAGTACACGATTTGATGAAATATGTTAAAAACGAAAAGTTGTTTTTAGATAATTACAAACTTCAAACAGCCTTAAAAGCATATGGAATTGAAGGAAAAGTGCCTCACAGAGCTCTCCCGGACTCTCAACTTATCTATCAGCTGTCTACCAAAGTGAATAAATTTTTGAAAAGGATCAATCAGAAATAGCGGTTTTATTGGGATCTTTTAGTGTTT # Right flank : AGATACTGGAATCTGAGAAATCTTGGTGAAAAAATTAATTTAATTTAGCGTCGTTTATTTACTTATTAGGCGTGCCTAATTTTTGCTTTTCTGTTATAATGAAGGCAAGTAAAAGAATAGAAAAGAGGATTTCTTTTGGAAAGCCCAAAGAATAACTATAGAGCAAATAAGGCCTCTTTGAGCGAGGTTAATCAGAGTGTTGCTGTTCCTGAGACAGCTTCATTTTGGCGAACGCTCAAGGCCTTTATTGGACCGGGTGCCCTAGTAGCAGTCGGTTATATGGACCCTGGAAATTGGATTACCAGTGTGGTTGGTGGTGCTTCTTATAAGTACCTCTTGCTGTCGGTGGTCTTGATTTCCTCCTTGATGGCCATGCAGCTGCAGCAGATGGCAGGGAAACTTGGCATTGTTACCCGTCAGGATTTAGCCCAGGCAACCGCTAATCATCTGCCAGCCTGGTTGCGTTACATCCTATTTGTCATTATTGAGTTGGCCCTGAT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TACCCGCACACGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched TCCCCGCACACGCGGGGGTGATCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-9.30,-9.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 2561-3308 **** Predicted by CRISPRDetect 2.4 *** >NZ_AGGZ01000047.1 Streptococcus sobrinus TCI-357 contig00047, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ===================================== ================== 2561 36 100.0 35 .................................... CATATCTTCGATCGACATAAATTTGTTATAAGTCG 2632 36 100.0 36 .................................... AAGATTTCATGGCCACGACTGTATTTAGCGCGAGCA 2704 36 97.2 37 ...............G.................... TCGATTTCGTGCCGTCCGTTACAAAGTCCTAGTTGAT 2777 36 100.0 34 .................................... TGGATTTCTTGTTTGTACAAGCTGAACAAGCTCA 2847 36 100.0 36 .................................... CCCTGACAGAAAACGCCGTTGGCATCGATGTCAATA 2919 36 100.0 36 .................................... TCAACAGTCGCCCTGGTAACGCAGTTTGAATAATTG 2991 36 97.2 36 ........................A........... TATCCACCGTCAACTTTTACCCACTCTGTCTTATCT 3063 36 97.2 34 ...........T........................ ACGTCACTCATATTTTCTAAGTCCCAATCATCTT 3133 36 91.7 33 ......AT.......G.................... TTTCCATGAGGTCGTAAAAATCTGCGTTCATAA 3202 36 97.2 35 ........T........................... CATAAAGGGTCAAGATTTCTGTCATCCGATTCTTA 3273 36 86.1 0 ......AT......C...............A....T | ========== ====== ====== ====== ==================================== ===================================== ================== 11 36 97.0 35 ATTGAATGCCCCATACCCTCGTAAGGGGACGGAAAC # Left flank : ACTCTCTGATAAGAGCCTTTAAAGAAAAAGATCCCAATTGCTATCTGGCTAGTTATACGAGGAGGTGAAGCCATGGGATGCGATTTTAATTTGACGGTAGAAGAACTGCTGTTTGCCAGAAATTATCAGCTCTACTGCCTAGTGATTTATGACATTGCAAATCAAAAGAGACGACTCAAATTGGCACGATTGCTGGAAGGCTATGGCAAGCGGGTTCAGAGATCCTGCTTTGAGGTAAAACTGAGCCAGAAGGTTTACCGTCGGCTGCTCCAGGCGCTTGAAGACTTTTACGAGGAAGATGAGAAAGACTGTATCACACTTTATAAAATTCGTCGGGAAGAGAGGGTTGTTTTCAACTCTTATGATGAGCCAGAAGAAGAGACACAGACGATTATCTTATGATTGCAAAACCTCTATGAACATGATAAACTGTTATCGGATAGTTTCAAGCTGAGGTACAAGATATAGCAGTGCCCGTCTAGACTGACACAAAATATGCT # Right flank : TTATCACACCAGTGTATTTTTGCGATAGGTGAATCGCTTTCCTATCGTTGCTTCTGCAGGCTTAGACCTTTCAGTCGGTTTTTTTAGGAGAAATATCTTCAAAAAGGATTTGACTTTTATCGCTGAAAGGTTTATAACCAACCAAAATATAAATAAAAAAAGGGCGCCTTTTCGGTGAAAAATACTTTTCAGCCGGAGGTGCCTTTTCAAATAGAGAAATGATGAAAGAACTAAGATTATTTTTTAAAAGAACAGCTTTGCCGGCGAATGTGCTAGCGGTAAAGCTGCAGGGTTATCTGATGGGTCAGATTTCCGATGACTACGCCGAATTTTTGCACCAGCAGGAAACCAATCCCTATGCCTCCTTCGTAATAGATAGAGGGGATCAGCAAGTCTGGACGGTCAGTCTCCTGACAGAACAGGCTTGTGAGCAGCTTCAAGAAGGCTTGCTGTCTCTGCAGCATATTCAACTAGACTCTTATGCCGAGCTTATTAGCATT # Questionable array : NO Score: 2.90 # Score Detail : 1:0, 2:0, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.79, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGAATGCCCCATACCCTCGTAAGGGGACGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [11,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-9.00,-10.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.37 Confidence: MEDIUM] # Array family : NA //