Array 1 8288-10722 **** Predicted by CRISPRDetect 2.4 *** >NZ_PJJY01000029.1 Vibrio parahaemolyticus strain KS17.S5-1 scaffold29, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ==================================== ================== 8288 28 100.0 32 ............................ TTTTTGCGGGTAAGGTAACGCAGATGTAAAAT 8348 28 100.0 32 ............................ TATCGATGTTCCGCAAAGCGTAGCCATTTTTT 8408 28 100.0 32 ............................ TCTTTGGTTTATCGGATAACATCGCAACGGAT 8468 28 100.0 32 ............................ AAGCCACCAGTCATCAAGTATTGAACTTCTGT 8528 28 100.0 32 ............................ ACTAATGGATTATCACTTGTTATTCTTCGTCT 8588 28 100.0 32 ............................ TTGTTGATATGTTTGGTCAGCATAGACTGAGG 8648 28 100.0 33 ............................ CAGAAAGCGAAAGCGAAACAGGGTCGCCTTTTT 8709 28 100.0 32 ............................ ATTAGGAACTTGCATAGTGCTAGGGCCATTAA 8769 28 100.0 32 ............................ TTACTTAGTTTTCGAATGTAAGCCTCATTTTC 8829 28 100.0 32 ............................ GCCCTTAGTTTCGCCACCTGGATCTTTAGGAT 8889 28 100.0 32 ............................ AGACCATTCAGGACAGTAGGCAGGCTTCCAGT 8949 28 100.0 32 ............................ TTCTTTAAATACCTCAATGCCTTGCTTATTTA 9009 28 100.0 32 ............................ AGTGGGTTAAGTATGAGCGCAAGCATCGTGTT 9069 28 100.0 32 ............................ GAACAGTAGCGCTTTTATTACTCCATCGACTA 9129 28 100.0 33 ............................ CTTAGAAAGCGCGCGCGGCACTTGTCCAAATTT 9190 28 100.0 32 ............................ AATGCGGTTTTGAGGTTCTAGCGAATGAAGAA 9250 28 100.0 32 ............................ TCATACTGCACCAGAATTTGATACTGTGACAT 9310 28 100.0 32 ............................ TTATCAGTATGTTGCGGTTGGTCTTCCTACTG 9370 28 100.0 32 ............................ TTCATGTTTCTCATCTTCCTCCTGATTTAAAC 9430 28 100.0 32 ............................ TTATTTTATATACTGCGGTTGGTCGTTGTCTT 9490 28 100.0 36 ............................ GCCAAGAATGAGACCAGCAACGCCAGTAATAAGACT 9554 28 100.0 32 ............................ AAACAGATATGTCTGCGCCACTTGAAATTGAG 9614 28 100.0 32 ............................ TTCCACGTGCTAGAACCATGCGCATTCAAGGG 9674 28 100.0 32 ............................ TTTAAATTTAGCTATCATTACGCCACCGCTTT 9734 28 100.0 32 ............................ TCGCAATGGCACGGCTAATGAATCCGAATCTA 9794 28 100.0 32 ............................ ATTAACTCACAGCTGCAACACCAATATTTTGA 9854 28 100.0 32 ............................ ATTGGTGGTGCTTTCGGCTTATCTAGCGCCAA 9914 28 100.0 32 ............................ CTGATTTCCGCTTGCAGCGTCCTGAGTATCTT 9974 28 100.0 32 ............................ AGCCGCTGCCGCTGCCACCGCCTGTACAATAG 10034 28 100.0 32 ............................ CATCCACTTGTCAGCAGTAACCGCGCTTCCAC 10094 28 100.0 32 ............................ AATTTGAAACCGCATCATTAACTTGCGTCGAT 10154 28 100.0 32 ............................ ACTTCGCAGTCAGATAAGCAATTATGCAAATA 10214 28 100.0 32 ............................ TAAATGCGCGATTATGCCCGGCAATAGTTGCC 10274 28 100.0 33 ............................ GAATTGTTGCCCGGTATGATTTGCATTCTTGAC 10335 28 100.0 32 ............................ TACAATAGCACTCGTTGAGAAAACAGTGATTT 10395 28 100.0 32 ............................ AACACGCAGCCCGCCATTACTTACAGCCAACT 10455 28 100.0 32 ............................ TCGCAATGGCACGGCTAATGAATCCGAATCTA 10515 28 100.0 32 ............................ ATTAACTCACAGCTGCAACACCAATATTTTGA 10575 28 96.4 32 .............C.............. TGCCCGTTGTTGTAGCGTTGACCATGCATCTA 10635 28 92.9 32 ..........A..C.............. GCCACGCGATACAGTGAGAACAACGGCCAATC 10695 28 85.7 0 ...A......A..C............G. | ========== ====== ====== ====== ============================ ==================================== ================== 41 28 99.4 32 GTTCACTGCCGCATAGGCAGCTTAGAAA # Left flank : GAACGATGTGACTTACGTTAGCTTTACTCGGAAACAAGTCAAATCCCCTGAGCGAATTGAACGCGATATGCAGAAAAAAGCGGAGCTTTGGGCGGCTAAATCTGGCAGGTCATTACAAGAGTGTCTTGTGGAGCTGGAAAAGACTAAGCCGACCTCGCTCTGTCCATTACCGTTTATCTATTTACATAGTCAACAAACCAAACAACGTTCACCGGATAAGAGCAGCAAATTTCCGTTGTTTATTGAAATGAAAGCTATCGGAGTAAAACAAGAAGGTTATTTCGACTGCTATGGGCTGAATTCCAAACTTAATCGGCAAGATTGCTTAGGGACTGTTCCGCAATTTTAATCAATAAAGGGTAAGTTTTTACCCTTTATTTTTGCTCTTTAAAAATAGGTATAAAATACAGCTAGTTACAATAGATAGATTTTGACAAGGTAAAAACATGATTTTTATCCTATCTATCTGTTGTAACTTTCTTTTATTGATTTATTCTGTT # Right flank : AGGCTGAAACGGTGTCCTCAAGTGTAAGCTTTATTCATATCGAGAGCTTTACGCTAAGTCGTAAAATTTAGATTTTATTCTCATAATATTTAGCCAAATAATTTCCTACATTAAGTTTAATAATAACCTTACTTAAAGGTATTTTTTATTTTCCATGTAGGGTAATAAATTTTTTGAAGTGTTACGAAAATCCATAATTATTCATATTTAATTTAATTTAATTTGCCAAAATTTAACAAAAAACAAAAGTCAAAAGATATGATTGCTTGGAAATAATCGGTGAATAATGCATAAATTAATATTATGTGTATTATTATTGAAATTAATGATTGAAGTGTATCGTCTCGCGATAAGGAATAAAATAGTGTTGTGTAATGTTTGTAAATTGAATTATGACAAAACTATAAGGCTAGGTAGGATAGCCATTTGTGATGAATGTTTGATTTCTGCAAGTGATTTTTATAAAGAGCATAGTCATGAAAAGTTTGAAATTATATTTC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //