Array 1 21492-22000 **** Predicted by CRISPRDetect 2.4 *** >NZ_LNYL01000012.1 Legionella maceachernii strain PX-1-G2-E2 Lmac_ctg012, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 21492 28 100.0 32 ............................ GGTAGCATTAGAACGAAAACGACCAGTAATAA 21552 28 100.0 32 ............................ AATAAGCGAGGGGATAGCTGAGCCAAGCGACG 21612 28 100.0 32 ............................ AACTTTCCACTTGATGTAATGGGGCGGACTGA 21672 28 100.0 32 ............................ GGTTAGTCTGCCAGGAGACATCATTAACAGGA 21732 28 100.0 32 ............................ GACTGGGTTAGTCTGCCAGGAAACATCATTAA 21792 28 100.0 32 ............................ TGTATCGCTCGGATATTCTTGAGCAGTTATGG 21852 28 100.0 32 ............................ GAAAGAATATCAAAAGATTCTAAAAAAACAAC 21912 28 100.0 33 ............................ CCTGGCCTCAGAAGGGTCCTGCTGTAGAGTTAC 21973 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 9 28 100.0 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : GGTGCTAGAAAATTTTAATGCGAAAAAATGGCTAAATTTTTTGTCTGATTACACGCACATCACTAGTATCCGGGAGGTGCCACAAAATATATGCTCCTATGTTCGTTTTAAAAGAAAGCAGTCTAAGTCAAATTTGGAACGATTGGCAAGGAGAAAAGCGAAGTACGAAGCCATTAGTTTTGACCAAGCATTAGAATTACTTAAAAATCGAAAAGAGCAATTAATAAATGCGCCTTATATCAATATATCGAGCAATAGTTCGGGAGAGAGCTTCAAAATTTTCATTATAAAAGAAGTTGCTCATGAGCTGATAAACAATGGTTTTAGTTGTTACGGTTTAAGCGCTACGTCAACATTACCGAATTTTTAGCCTTTATTTTTGCTGCTCTTTAAAAATATAATAAAATCAATAGGTTAGGAAAGGCATGATTTTCATTGGTAATTCTGGGTATTTTTAGCTAAGTATATTAAGAATATCGAATATTTTTAATATAATCTGG # Right flank : T # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [78.3-1.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 23682-22813 **** Predicted by CRISPRDetect 2.4 *** >NZ_LNYL01000003.1 Legionella maceachernii strain PX-1-G2-E2 Lmac_ctg003, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 23681 28 100.0 32 ............................ AATGCGGATTTTCCGCGCATAAATCCCCTAAT 23621 28 100.0 32 ............................ TAAAAAATACGGTGATATTAAAGTTGATGATG 23561 28 100.0 32 ............................ TTGACGAGAAAATTACAACAAAGCTCCTCGAA 23501 28 100.0 32 ............................ CAACAAAATCAAGAGCTAAACCTAAGCTTTTA 23441 28 100.0 32 ............................ TGATGATTCGACTGATTATATTGTTCCGCAGA 23381 28 100.0 32 ............................ TTTACATCTCCTCTTGGTTTTAAGTGCGTATC 23321 28 100.0 32 ............................ AAATACATTTTTAATTTCAAATGCTATGATTA 23261 28 100.0 32 ............................ ATCAGACAAAGAATATGAGCATATATTTTCGG 23201 28 100.0 32 ............................ GGCATGATTCGTGCACATGATTTTTCTCGTTC 23141 28 100.0 32 ............................ AGGATCATTATCAAACTTTGCGCGAACCTTAG 23081 28 100.0 32 ............................ AAAAAACTAAGGAAGCCTTTATGATTAACGCA 23021 28 100.0 32 ............................ AAGCTTGCAGGGGATAATAACAGGTCATATAA 22961 28 100.0 32 ............................ TGCTAAAGTTAGGGCAAAATTTGATAATGATC 22901 28 100.0 32 ............................ ATGCTTGTCTTTTAGATGTCTTGCTAAAAGCC 22841 28 92.9 0 .................T......A... | C [22816] ========== ====== ====== ====== ============================ ================================ ================== 15 28 99.5 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : GAAATTGACGAGAAAATTACAACAAAGCTCCTCGA # Right flank : CTAATCTTCAAAATTTTCCTTCTTAGCTTCATGGCCGTTAATGGCAATATTAGCGATACAGCCCAATCAATTCAGTATGAGGATTGCTGCTTTTGAGGCAATGGTATTATCTTCACTAATCAATGTGCTTGATGTTGTTCTAGAGATTGTGAAGTAGGGTAAAGACAGGTGGTTCGTAAAGGTTTTTTCGAGCATCTTGTCTAACTCATGATTAATTCCTGATGAGGTCATGATCATAAAGCGTGATTTTTTGAATTTTATATGGGAAGGCATTGTTTTTTTAGTGATTTTCCATGATTAAACGTAAATGATTGCATTTCGCATTTTTGTTTGAAATCTAGTGAATTGCAAATTACTCTCTCTTAAGAAAAATAATTGGTTGACTAGTTGATATGAATAACACTGATCTTAGGCGCGGCAAGTTAATGGCTCGTTAGCTTTTATAAGTTCGTATTTATTTGTAACGAATATTAAGTGAATCAGCAAAAAGAGTTTTGATT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //