Array 1 23-409 **** Predicted by CRISPRDetect 2.4 *** >NZ_MUXU01000114.1 Moraxella caviae strain CCUG 355 355T_ctg_0000114, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 23 28 100.0 32 ............................ TTCGAATACACAAGATTGTCAAAATTATTGAC 83 28 100.0 32 ............................ ACAACGCTGAACATTCGCCCAATGTGCTTTTT 143 28 100.0 32 ............................ TTCGAATACACAAGATTGTCAAAATTATTGAC 203 28 100.0 32 ............................ ACAACGCTGAACATTCGCCCAATGTGCTTTTT 263 28 100.0 32 ............................ AACCACAGATGAAACCATCAAACACAATATTT 323 28 100.0 32 ............................ GTATTTGTCGCTTAAGTGTTTGCCAAAGTCAA 383 27 92.9 0 .......................-...T | ========== ====== ====== ====== ============================ ================================ ================== 7 28 99.0 32 ATTATCAGCCGCATAGGCTGCTTAGAAA # Left flank : TTTTACGGCGGGGTGGATAACAA # Right flank : TACAGTGCTACGAGCATTATTCGCTTAAAAAAATTATACTATTAAAAGGGATGGCAATAGTGATATACTGTACAAAATTTAGTCAAAAAGGATTTGATTATGTGTGATGCCGATAATGAACTGCAAGAGTGGGATAAGCTTTGTAATGCTAGACAGGTTGAATGGCTATTGTCGCACTTACGCAAAGCACGCTATTTATACGATATCCAAGATGAAGATTATAGCTTGGGTGCAACAATGCATTTTGTCGTTGATTGTGTCAAAGTATTCATTGAAGAACCAACCCCACTGCATTATTTATCACTGATACAAACCGAAAATATGATGTTAGGGGCGTTGATTGCCAAAGGTGCTAATTTTGCGCCTGTTGGTTGGGGGCGACTGTGGGAAGCTAGAAATCATCTGCCATCACTAAGAGATGCTTTAGAAGTGGCGGTAGCTGAAAACGATTACTTGTTTGACTTTAGATTTTTTTCAGATTCTGACTTTGACCCTACCTG # Questionable array : NO Score: 3.01 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTATCAGCCGCATAGGCTGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [18.3-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.27 Confidence: MEDIUM] # Array family : NA // Array 1 27494-30211 **** Predicted by CRISPRDetect 2.4 *** >NZ_MUXU01000029.1 Moraxella caviae strain CCUG 355 355T_ctg_0000029, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ====================================================================================================== ================== 27494 32 84.4 34 .....................A...C..C.CG CTTTTTCATTTTTATTTCGTATAATGCCTCTCAT A [27517] 27561 32 84.4 34 .....................A...C..C.CG TGAGCTGATTGGCAATCAACTGGTAGAAGCCAAC A [27584] 27628 32 84.4 32 .....................A...C..C.CT CTCACCCAATCGAATACACGCTTCCTGAAGGC A [27651] 27693 32 87.5 34 .....................A...C..C.C. TTTAAGTTTTCTTGTGTAAGCGGTTGCAAAAATT A [27716] 27760 32 84.4 32 .....................A...C..C.CT GTGTCTTGGGTAAATTTTTCATAGGTGGCAAG A [27783] 27825 32 90.6 24 .....................A...C.....T CGTCAAATCGCCATCATTGACAAA A,C,C [27848,27854,27856] Deletion [27881] 27884 32 100.0 34 ................................ AAACAGTCGCCAACCTTGACGACCTGCAACATAG 27950 32 100.0 33 ................................ TTGGCGACTGTTGCGCCGACAACCTGAAAAAAC 28015 32 100.0 35 ................................ ATCTTCAAAAAGTCCGTCTGCCACAAACCATAGGC 28082 32 100.0 33 ................................ AACTACTCTGGCACACGCGCAAGAGACCGCCAC 28147 32 100.0 34 ................................ AAAATGCCCAATCTTAGCACTCAAAGCCGACAAC 28213 32 100.0 35 ................................ CGTGTGATGAGCATCAGCCAAAATGACGATGCCAC 28280 32 100.0 34 ................................ GGATTATTATCCGCCCACAAAGTCTGCGTGATGC 28346 32 100.0 33 ................................ AACCGTAACAGGGCGGCTAAAATGCCAAACAGC 28411 32 100.0 36 ................................ TAACAGCAGTGGAGTACCATACGGTTCTTCACCAAC 28479 32 100.0 34 ................................ ACTCCCATGACTGAAAAGCTACGACCAGCAATTT 28545 32 100.0 32 ................................ CGCTGTCAATCTGATAATTGCCCACTTGCACC 28609 32 100.0 32 ................................ GGCATGATGATTGAATGGGCGTTTGCCAAAGG 28673 32 100.0 34 ................................ ACGCTGGCACGACTGCGCCTACTGCCAATCTAAC 28739 32 100.0 34 ................................ ACCTGCGCCTGCATTGGTTTGTTTTGTGCGTTTT 28805 32 100.0 33 ................................ CTACAAATCGCATTGATGTCGCCAATCAGTACA 28870 32 100.0 35 ................................ ACGCAGTGCGCCCAATGAGTTTTTGCGCACTTGTT 28937 32 100.0 33 ................................ AATTATTCGGAAAGTTTTGGGGCACGTAACAAT 29002 32 100.0 33 ................................ ACGATATATCATTTAATCGCCAAGTGTTCGAAT 29067 32 100.0 36 ................................ TCACGTCCTACACCGTGCAAGTTGTTGTTAGTGTTC 29135 32 100.0 34 ................................ CTTATGCTGATGGGCATTTTATTAGCGATATTCA 29201 32 100.0 34 ................................ TATGCAAACTTTCAGCAGTTTCAGTCATAAAAGG 29267 32 100.0 33 ................................ CTCGCAATCCCTTGATATACAAGGCTTTGACGA 29332 32 100.0 35 ................................ AAATATCTGTACCGAGCAGGCGCAAAAGATGACAA 29399 32 100.0 33 ................................ GTAAACGGTTTAGCACGTCCACCGCCGAACCTA 29464 32 100.0 32 ................................ GATGTACCGTCTGAACCTGCACCGTTAAACGT 29528 32 96.9 33 ...........T.................... ACCTGCGCCACAGATGATTGAAGTTTTGGATTA 29593 32 100.0 26 ................................ GGATTATATACAGTATGGCGGCACCT Deletion [29651] 29651 31 84.4 32 G.....T....-A........A.......... GTTTTTTCACAGCCCTGCAACGGGACAATATG T,T [29655,29659] 29716 32 96.9 102 G............................... GCAACCGAGATTACAGTATAATATACACATTAAATCTCTCACGCCCTTACAAGTGAAAGATTTCGAGCACGGTGATACTTATAGCGATGGTATTGCCACCAT 29850 32 90.6 34 .....TG.T....................... CAATCTTAATCAGTGTACAGATTGGCTGTTGTAT 29916 32 96.9 34 ...........T.................... AATCATAATGCTAGCGCCAATATTTGGACGCACA 29982 32 100.0 34 ................................ CTAGCGGTTTTTGATGGTCGTTATCTGCGCCAAT 30048 32 96.9 34 .............A.................. GCCAGCTGCCATCGTCTTTGCACCATTCCACCAA 30114 32 93.8 34 ...........TA................... AATCATAATGCTAGCGCCAATATTTGGACGCACA 30180 32 93.8 0 ...........................T...A | ========== ====== ====== ====== ================================ ====================================================================================================== ================== 41 32 96.7 35 TCTCACACCTTCGGGTGTGAGTGAATTGAAAC # Left flank : TACGAACCTTATCAATATGCCAGATAAATGTCGGCTTCCAATAAATGCTACGACACACGCCTTTTAGGGCTTCATAGGTGGGAACATGGTAAGTGGTTTTCTCGCCACCAATTTTAGTGACAGGGTCGGTAAACAGTGCATTGCGCCCTGTTAGCAGGAATGTCATAGTGTTGGCTGGCAATGACATGGCGATCCTTATTACCCTAAAACAATTCTAATGACGGCAAAACAAGATTTTCAAACCTATGCTTTTTGGATAAAAATACTGTATAATTCACAAAAAGTCAATACTTACTTTGCAAAAAAATAAGTGCGAACCTTAAGCACACATAAAATCCCTGGCAGGTTCGCAGAATTATTTAACAACTTGATTTTAAACAGGTTTGGTTGTAGAATCATAACCTAATGCTGTGCAATGCAGCATTAAAAAGTTTTGCTACCGCCCATTCGCAGAATTGGTAAATTTTTATCAATAAAATGAATGGGTTAAGTAGCAGGCT # Right flank : AACTAAGGCTGTATTAGAATAACAACCATACTATGCTAGCACAGCCCTATAAAAAATTGTGCAGATTTTCCCAAGTTTAACAGTCTGCAACCCCTATTCTTGCTGAGTGATTGTATTCGTTTAACGCCAGTTTACCATCCATAAACTTGTCCTAGTTACCTATATTGGCTCATTTAAGCACACTGCAAAGGCTGCAATCAAGAATACAAACCACAAATCAAGACACCTACTGCATCGCACAGCATACTCAACAGCCTTACATTATCAATAGAAGCTTTTAAATAATGGTGTTTTGATTGACAAACTTATCACAACAGACTTCTAACATTTCATTCTTTAAATACTTAGCATTGCTCAAATTTTGGAATAAAAAATCTTTATAAAGCATATCACAAACAAAAATAGCCCGAAGTATGTGTATCGGGCTATTTTTTATATCACTTGCTGATATAAATTTAGGGGCTGTCCTAGATAACTAGAACAAATACTCCCTAACTAAT # Questionable array : NO Score: 5.95 # Score Detail : 1:0, 2:0, 3:3, 4:0.84, 5:0, 6:0.25, 7:-0.14, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TCTCACACCTTCGGGTGTGAGTGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.60,-4.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [25-18] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.41 Confidence: HIGH] # Array family : NA //