Array 1 148544-148156 **** Predicted by CRISPRDetect 2.4 *** >NZ_VKRZ01000004.1 Citrobacter koseri strain AS012499 AS012499_4, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 148543 28 100.0 32 ............................ ACCTCCGCCAATGCCATTTCTCAGCACATCCA 148483 28 100.0 32 ............................ AGTCTGAGAAAACAATGGTAGAGGCTTTTGCT 148423 28 100.0 32 ............................ AGTCAGCAAAATACCGCCAGGCTGATGTTGCA 148363 28 100.0 32 ............................ AGGACGATATCGGTAGCCGCTGAGATTCAGCG 148303 28 100.0 32 ............................ TACCATCGCAATCGCCGTTGCAAATGCCGCAT 148243 28 100.0 32 ............................ AATCAAAATCCCATCAACAACACGTTCCTGGC 148183 28 82.1 0 ...........C........T.C..T.T | ========== ====== ====== ====== ============================ ================================ ================== 7 28 97.4 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : AGAACTGCATCACTGGCCCGGACTGAGCCTGGCTTCAGGTAAACATATCCACCGCTGGGAACTCTTTGGTCCGCAGGGCGCGCGCGCTGAAGTTCACTTTACACCGCGTTTGATCACTACAGACATGCTGGCGCTGCGTGAAGCGGCCGTTGCGGGCGTCGGCCTCGTTCAGTTACCTGTTTTAATGGTGAAAGACCAACTGGCTGCGGGGGAGCTGGTTGCCTTGCTGGAAGGATGGGAACCCAGAAGAGAGGTGATTCATGCGGTATTTCCGTCCCGCCGTGGATTGTTGCCGTCCGTACGCGCACTGGTGGATTTTTTGACAGAAGAGTATGCGCGGATGGTGGAAGATTAAAACAGAGCGCAATACACCCTTTTTTATTTTATGTTACTAACTTATTGATTTTATTTTATATATATAACTTGGGTGAAAAAGGGTCTGACAGGAAGACGTTGCGTTTTTCTTCAATAAATCAACGTGATTGTCTGATATTATTCCT # Right flank : TTAATGTAGAAGGAAGGGAAGCTGCGGGGAATAAAAATAACGTTAATTCGCATCAACGGTATTCATGCAGGAAAGGGACAACAAAAAGGCCGGATAAACCGACCTTTTTTTATCTTTACGCCACCCGGGCGTGAAAACAATCAGCGACTACGGAAGACAATGCGGCCTTTGCTCAGGTCGTACGGGGTCAGTTCAACAGTCACTTTGTCGCCCGTCAGGATGCGGATGTAGTTTTTACGCATTTTACCGGAGATGTGTGCAGTAACCACGTGACCGTTTTCTAATTCTACGCGGAACATGGTATTAGGTAACGTTTCGAGAACGGTACCCTGCATTTCAATATTGTCTTCTTTGGCCATCTAATCCTCTGGGGTATCACTACCGTAATTTGAACCGGCAAGATAATGCCGAAGTTCTTTAAATAAGTAAAGATTTGCGCGTTTAAAACGCAGCAAATCAGGTTTGGCGCATTACTCCGAAAAACACGGCAAAGCCGCACT # Questionable array : NO Score: 6.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.72%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 160735-159927 **** Predicted by CRISPRDetect 2.4 *** >NZ_VKRZ01000004.1 Citrobacter koseri strain AS012499 AS012499_4, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 160734 28 100.0 32 ............................ GCTCGCGCACTCGGCCTGCGCGCCTACATCGA 160674 28 100.0 32 ............................ GTTGGTGATGACTTACTGGTCGCGCTTTTGTT 160614 28 100.0 32 ............................ GTAAATGGATGTCCAGAGGCGAGCAAATACAT 160554 28 100.0 32 ............................ GAATGGATACGATGGAATAACCCTGGACTACA 160494 28 100.0 32 ............................ GTATCCAGTTTGAATGAGTGTTGGGACAACTA 160434 28 100.0 32 ............................ ATCAGATGTGCAGCAACAACCGTATGATGATC 160374 28 100.0 32 ............................ AGGTGCCGCAGGGGTATATGTAACACTGGTGC 160314 28 100.0 32 ............................ AATAGCAGAACCCCATCCCATAGTTTTTACTC 160254 28 100.0 32 ............................ GCAACTTTCGTAAACATGCTCGGCAGCACAAA 160194 28 100.0 32 ............................ GAACACGTCATCGTTAGGATTATCACCTACAC 160134 28 100.0 32 ............................ ATCACCTGAACCACACACGCAAATATATGAAC 160074 28 100.0 32 ............................ GAAATTAAAATCGTAGTCAAAACGCTGTGGAA 160014 28 100.0 32 ............................ ACATGGGCATTCCATTATCGCCGACTTTTCTT 159954 28 85.7 0 ......................ACC.C. | ========== ====== ====== ====== ============================ ================================ ================== 14 28 99.0 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : GGATCAGAAAGGCGTCTCCCTGGAAGTGAGTCAGGAAGCGCGTGACTGGCTGGCAGAGAAAGGCTATGACCGCGCGATGGGCGCACGTCCAATGACGCGCGTCGTCCAGGACAACCTGAAAAAACCGCTGGCAAACGAGCTGCTGTTCGGTTCACTGGTTGGCGGTGGCCAGGTGACCGTTGCGCTGGATAAAGAGAAAAATGAGCTGACGTATGGCTTCCAGAGTGCGCAAAAGCACAAACCGGAAGCTGCGCATTAATCTCGTAACCGGTAAAATCTGAACGCCAGTCGCGTTCAGATAAACTCGCTAAAATCCGTAATCTCTTTTGAGGTTACGGATTTTTTTTGCCGCCATGCCCCGGATACCTGGAAACCCTTTTTTTGAGTGTTTTTTAACGCTATGATTTTTATGTGTTTATATTAGGTGGCGATAAAAGGGTATTTAATCATTTCGTTGATATTTTTCTTTATTAACACCATGATAGCGACGAACTGCTTCA # Right flank : CCACAAATGTAATTATTTATTTTGAAAGCTCTTTTGTTGATTTTTATCATTTCATCTGCCGGAGCCTCATCAGTACTATCGATAACACATAAAATGACGGGGTTTAAATAGATATGTCTGCAAATTCAATTATGCCTTCGGATTTAAAAACCATTCTGCACTCTAAACGCGCCAATATATATTATCTTGAAAAGTGCCGTGTGCAGGTAAATGGTGGGCGAGTTGAATACATTACGAGTGCAGGTAATGAATCATATTACTGGAATATTCCTGTCGCGAATACTACGGCGGTGATGCTGGGTATGGGCACGTCAGTGTCACAGGCGGCGATGCGGGAGTTCGCAAGGGCTGGCGTGATGGTTGGCTTCTGTGGCACTGATGGTACGCCGCTTTATTCCGCAAATGAAGTTGATATTGATGTGTCATGGCTGTCACCGCAAAGTGAATATCGGCCGACTGAATATTTACAGCATTGGGTCTCTTTCTGGTTTAAAGAAGAA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //