Array 1 50457-57031 **** Predicted by CRISPRDetect 2.4 *** >NZ_AASE01000005.1 Chlorobium ferrooxidans DSM 13031 ctg59, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 50457 28 100.0 32 ............................ GGAACAACGGTATCCCCGAACCGCCGCTCAGC 50517 28 100.0 32 ............................ AAGTCCCCGCTCCGATTTGATCATCTTCAAAA 50577 28 100.0 32 ............................ CGACCGACTTGCTTACCGAAACAGCCTCAACA 50637 28 100.0 32 ............................ CGAGGATTTCCTCTTCGATTTTACGGATGGTC 50697 28 100.0 32 ............................ AAGGGATATGGACAGGCTGGTTGCCGGATCAT 50757 28 100.0 33 ............................ ACAAGGCACAGTAATACGCAAATCGTTATAAGC 50818 28 100.0 32 ............................ TCTCAATGGATCGCTAGACCTTGATGAATTCC 50878 28 100.0 33 ............................ GGAGAAGTCTTCTACAAACGTCCCGAATATGCT 50939 28 100.0 33 ............................ CCGGGAAACTTAACGTTAATCGAACATCGTTAC 51000 28 100.0 32 ............................ TCAAGGTTGTCCGGGCAGAAGAGGCTGATTTA 51060 28 100.0 32 ............................ TGTATCAATGCTTCAACTCTGGCAGATTCTAT 51120 28 100.0 32 ............................ TTTTATCCACGATTTAACCAAAATGATTATGC 51180 28 100.0 32 ............................ CGTTTGATACGGGGGTTTTGCGGGTAGAACTG 51240 28 100.0 32 ............................ TGAGAGCAAGTGTCGGCGCAAACGGATCAAAA 51300 28 100.0 32 ............................ AGATACTACGACTATATGCTCGAATGCAGTGA 51360 28 100.0 33 ............................ TGGGATTGCTGCTGGATGGTTCGATAAATTCAA 51421 28 100.0 33 ............................ AACCGCCTCAAGGATCGATGCTCCATAATTATT 51482 28 100.0 32 ............................ GCTGTACACGCACACTGTAAGCGCCGGTATCC 51542 28 100.0 32 ............................ GTCGATACCCGGAACTCTTGCAATGCGGATTC 51602 28 100.0 33 ............................ GGAAACTCGCGGGCTCTTGTGCTACAACCTCAA 51663 28 100.0 32 ............................ TTTCGACCGGCTGACCATCTACCTCGAACTGC 51723 28 100.0 32 ............................ ACTCGGCAACATCATTCACCGGCACATCAACA 51783 28 100.0 32 ............................ TCGGCCTGGCCTCTGAACTCATAAGCAAATAA 51843 28 100.0 32 ............................ ATAGTGTGGCAAGCTTGTCAGAAACATATAGG 51903 28 100.0 32 ............................ TTGACGACAAAACTGAGCTGCTCCTTTTCCGG 51963 28 100.0 32 ............................ GTTGCACAAGGCCTTCTTGATCGCATCCTCGA 52023 28 100.0 32 ............................ ACCGTAAACTTTTTTATAAGCTTCGCCCTGGT 52083 28 100.0 32 ............................ TAGTAATGATTTAGCAGAAGTGCCGAGAGGCA 52143 28 100.0 32 ............................ AAGGTACCGGTTACCATTAGTCAACGCCCACC 52203 28 100.0 32 ............................ TCCGACGTTTACCGATGTTGAGTTGCAGGCGG 52263 28 100.0 32 ............................ CGCTGCTGCAATAGGAGGTGCAGCAAAAAGAC 52323 28 100.0 32 ............................ ATAATGCGGCAAGCTGGTCAGAAACATATAGG 52383 28 100.0 32 ............................ TGTGTAGCTCTTACTGCTGCATCTGCTTGCTG 52443 28 100.0 32 ............................ AGCGATACCCATAACTATACCGTGTTCAACGA 52503 28 100.0 32 ............................ TGTTCGCCCATGAATTTCTGGAAGTTGTCCCA 52563 28 100.0 32 ............................ TACCAAAGTCGGTGGCCTCGTACACACCTCTG 52623 28 100.0 32 ............................ TGGAAGGCCGGAACGGACATTGCGTTTACGCT 52683 28 100.0 32 ............................ CCTACAAAAAAGTTCTATCTCAATCGCGGGTT 52743 28 100.0 32 ............................ TTGATCTCAACGGGCACACAAAACCATAAATC 52803 28 100.0 32 ............................ TTTCGGAATGGCACACCAAGCATCCCGTAATC 52863 28 100.0 32 ............................ GGAAACTCGCGGGCTCTTGTGCTACAACCTCA 52923 28 100.0 32 ............................ TATATGATGCGGGTAGATATGGCACAAGTGGA 52983 28 100.0 32 ............................ CCAACCAGAGCATCCACCTGCGCCTGAGCCGT 53043 28 100.0 32 ............................ GCAAGATCCCGGTTACTCTCCTTGCCGTCCCG 53103 28 100.0 32 ............................ AAAATCTGCAAGTAACGATGTTCGAGTCACAT 53163 28 100.0 32 ............................ ACCATGCCGCCGATGTAATGTCTACACCTCCA 53223 28 100.0 32 ............................ TTTGTCCCGTAACCGGCCACGACTTGCCCGGT 53283 28 100.0 32 ............................ GGATTGCTGTCGGGGGTTAATGGGTTGTCGGA 53343 28 100.0 32 ............................ CGGAGATTGAGCTCGCTCATAGCTTCCGGTCT 53403 28 100.0 32 ............................ AGCTACTGAAATGGCGGCTTGTGAGAACCTGG 53463 28 100.0 32 ............................ TGCATAAACGGTTTCCGGGCGGGCACTGGACG 53523 28 100.0 32 ............................ AGGAACAATGCACCCTGCGCTGAGTGAATTAA 53583 28 100.0 32 ............................ AATGCCTGTCTACAGTGTACCTGGTCTTATAG 53643 28 100.0 32 ............................ TTTTGAGGCCAAGGTAAGGCAGAAGTGAAATA 53703 28 100.0 32 ............................ TGAATAACGAAATCTATGCTCAGGGAACATCT 53763 28 100.0 32 ............................ TCCTGATCCAGAAGTTAATGCCATCACTTGGC 53823 28 100.0 32 ............................ GACACCGAAGAAACGACAGGAGGCTTGGCTGG 53883 28 100.0 32 ............................ TTATTGATTACACAACTGGTGAAGTTCATGAA 53943 28 100.0 32 ............................ TGAAAGTGTCTCCGGGGAGTGCTTCATCAGCA 54003 28 100.0 32 ............................ ATTAACCCCCGACAGCAATCCGGACACTCCGG 54063 28 100.0 32 ............................ GGTTCGTTGAGAGTGCGGTCGGCACTGGCGAC 54123 28 100.0 32 ............................ CGATAGCTGCTCAATCTCCATGAGGATCTTCA 54183 28 100.0 32 ............................ GATCAGTGGGGCTAAAACCTATCTTACAACAA 54243 28 100.0 32 ............................ TCAGAACGAGCGCTGAACATCTTTCCAGACTC 54303 28 100.0 32 ............................ GTTGCCGTAAGTCTCAAGCGATCCGCGCAACT 54363 28 100.0 32 ............................ GATAATTGTTATCAAAATCTGAATGGGTTTTT 54423 28 100.0 32 ............................ GGAATCGCGGTTGCTGCGCTCCTGATTTATAA 54483 28 100.0 32 ............................ GGTTGATGCGGTATTCGGTGGCGAATCAGACC 54543 28 100.0 32 ............................ CGGAGGTCGAGCGCGAGACGACGGATGAGATT 54603 28 100.0 32 ............................ TCAGACAAAAGAGGTGCTGAAAACAGCCAAGT 54663 28 100.0 32 ............................ TGCCTCGCCCATTCGTTTTGAGTTGAGATTAT 54723 28 100.0 32 ............................ AACGTATATCCGACGAGGCCAAACTACTCGAA 54783 28 100.0 32 ............................ CAGTGCAATTCAGCCTTGTAGACTTGCCCTGA 54843 28 100.0 32 ............................ AGAATGGGTCGCTTATTGCGATTGATTGCCAA 54903 28 100.0 32 ............................ TTTAAAAAGGCCGGTCTCACCCCTGCCAGTGC 54963 28 100.0 32 ............................ TCTGAGATACTCCGGAAACCATTTCACTACTA 55023 28 100.0 32 ............................ ACTTTATGCCACGCTTGCTCAGCAAATGGTAT 55083 28 100.0 32 ............................ TTGACGAGATAAAGGCGGCGTTTGATGAGGTC 55143 28 100.0 32 ............................ TGGCAGGCGTCGCAATCCGCTTGTACTCTGTC 55203 28 100.0 32 ............................ GCTGAGGATGGAACCTTTAAACATGGGAGTGA 55263 28 100.0 32 ............................ ATTCTCCGGCAGATGGATTTTAACGGTATGAT 55323 28 100.0 32 ............................ ACCGATGATGCAGGAACTTGAGTTGACTGAAA 55383 28 100.0 32 ............................ ATACAATTTCAAGGGGTTTTTCATCATTGATT 55443 28 100.0 32 ............................ TCCACAGTTATGGAACCGATGCAGTTATTGTT 55503 28 100.0 32 ............................ TATACTTTTGGCGGAAACAATGCCGGGATTGG 55563 28 100.0 32 ............................ ATTTTGATTTTTGTAAAATTGTTGATCAGTTA 55623 28 100.0 32 ............................ TTTGATGCGTGGCAGTGTTGAGAGGGCTGTGC 55683 28 100.0 32 ............................ CAGCGCGGAGCATCACCAGTCAAAGCGTTTTC 55743 28 100.0 32 ............................ GAGCTCGCCAAAGCCTTAGGTGTAGCTAAAAC 55803 28 100.0 32 ............................ AAGTTTCTTGGACGTAACTGATTCAATGACTT 55863 28 100.0 32 ............................ CGATACTACGACTATATGCTCGAATGCAGTGA 55923 28 100.0 33 ............................ TAAGTATTTGAGCATCATTTACAGCTTTTGTAT 55984 28 100.0 32 ............................ CATTGTCGAGAGTATTCAAGTTTACAGCCGAG 56044 28 100.0 32 ............................ ATCAACGGCTGCACAATCGGCATCATCCTTGT 56104 28 100.0 32 ............................ GGTCGAAAGACGGATCGTCTGTAACGAACGAG 56164 28 100.0 32 ............................ GATTATTCCTGCTATTTTTGGGTTAGCAAGAA 56224 28 100.0 32 ............................ GACGTCAAACCCGTCACAATCTTATCCATCAA 56284 28 100.0 32 ............................ GAAAGCATCGCACGGGTACCGGTCATCTTTGT 56344 28 100.0 32 ............................ GACAAGGCCTGGGCAGCTTCGCGGCGTCCCTG 56404 28 100.0 32 ............................ GGTTTCGGGTCAACCATGTCAACCGCGGAATT 56464 28 100.0 32 ............................ TCCGCCGATCAATTCGCTTGCCATCCCGACAA 56524 28 100.0 32 ............................ CCAGGCTAGCTGGATTGGAGAAACCACATTCG 56584 28 100.0 32 ............................ ATGAGGATTAGAAGTATTTGATGTATGAGAAG 56644 28 100.0 32 ............................ GTAGACTTCCCGGTCCCCGATGGCGACGTAAC 56704 28 100.0 32 ............................ TGTGAAGATATTGCAAAAGCCTTCAAGAAAGC 56764 28 100.0 32 ............................ GGAAAGTGTCGGAGAGTGGCGGGGCGCGGGTT 56824 28 100.0 32 ............................ TCAAGCATCCGAAGCTGCTTCGGTGATGCCAT 56884 28 96.4 32 ...........................T GCAAAGTTCAAGGGGTCTGGCCGGGTACTTGT 56944 28 100.0 32 ............................ AGCGATACCCATAACTATACCGTGTTCAACGA 57004 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 110 28 100.0 32 GTTCACTGCCGGACAGGCAGCTTAGAAA # Left flank : AGTTCATATAAAATATTTGATAAACAATCTTTCATTGGCAGCACTTCTGGATCATCTGCGTGTGGGTGATGTTCAAGAGGTGCCAACGAGAGTCAGGCATGTTTCGGTGAAGCGGATACAATGTAAAAGCAGTGCGGAGCGAATAAGGCGACGACAAATCAAGCGTCATCAACTTTCTGATGAAGATGCACTGACCCATATTCCGGATTCTATTCAGAAACAATTAACCCTGCCTTATGTGACATTGAAAAGTGACAGCACTGGACAATCTTTTCGGTTATTTATTGATCAGCAGATAGCGGAAAATCCTGTGACTGGCACATTTAATGCCTATGCTTTAAGCAATGGGGCAACCGTCCCGATGTTTTAACCCTTTTTTTATCGGCATCCTGTTGCTCGTTAATAGATCAGGGTAAAAAGATCATTCTCCAAAAAGGGTGTTTCGCTTAAATAACCAGATAAACTCTTTTTGGAGAATGGTTTATTTGAAAATATTTGTA # Right flank : ATGATTTCGCCGGAGCATGTGGGGAGTGACGTTCATGATTTCGTACACTTGCGTTAGCGAGGCAAAAGTGAATAGCTGATTATTGACCAAACGAATGTTTGACTTTGCGCATCTGGGTTGCAAAGGCCTTGATGTGTTCATCCCATGCGTTGTGCAAGACAGGGGCAAAGTCTGCTCTATTCGGCCATACGGTTGTTCCTGCTTCATCGTCAACAGTCGCTTGTCTGAAAAAGTCATGATCGCGTAGAGGTGTATAGAGTTCACCAAACAAAACGGATTCCAGATTGAGCTTTTCAGATCAAGTCCGCTTGCGGGAGATCCTTGAATTCCTCAACCAACTACTCTCCGTCCCGACTGACAACAAATCCTTTATGCATTGAGGTTTGACTATGATTCCTGAATCAGGTAAACAGAGCGGTGCATGCATAAAAAGGGGTGATAAACGCTATTCTCTGGTTATATTTTCTGATATGGTTTGACAACGCGATTATCTGAAGGAG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGGACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGGACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //