Array 1 65099-66378 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARYB010000008.1 Listeria booriae strain FSL L7-0278 NODE_8_length_113228_cov_41.554304, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 65099 30 100.0 34 .............................. TATCCTTGCGTCTTTCTTCGTGTCGGTTTCCATA 65163 30 100.0 36 .............................. AAATGGTTCCGCCGCGGCCGAGCGCAGTTGAGTTGT 65229 30 100.0 36 .............................. ATTCGTGAGGGTTCATTATTGATGACATCCATTAAA 65295 30 100.0 36 .............................. TTCGTAGTTCTCTAAGTCTTCAAAGCTATCAATACC 65361 30 96.7 37 .....................C........ AGATACGAGTGTATTTGTATCGGTTTCATTCATAATC 65428 30 100.0 36 .............................. CTGTTTACCTTTAGCCGCAGGCGCTCGTTGCGGAAG 65494 30 100.0 35 .............................. ACTTTTTTAGCGCCTAATTTACGAAGTTCATCAAT 65559 30 100.0 36 .............................. TCGTCACGTACGAATTTCCCGCCAGGTAACGCGCAT 65625 30 100.0 36 .............................. CTTCGCTAAGCTCATCATCAAAATAAACGGCGAAGT 65691 30 100.0 36 .............................. AGTAGTACAGTTAACCGTAATTTAGAGGGGAGGAGA 65757 30 100.0 36 .............................. GATGAAAATAGCTCATCCGGGAGCTTTGCCTCCAGC 65823 30 100.0 36 .............................. TCATAAACACTGCAGTGTATTCCTCAAATGTGCGTC 65889 30 100.0 35 .............................. ATCATTATAAGTGTTGTGACACAAATAGTGACACA 65954 30 100.0 35 .............................. TTAACTGGAAATGTTTAATCTCGTAGGTGTTCTTG 66019 30 100.0 36 .............................. TTGATTGAAACCTATTTGGACGCGTATCAAAGTTAT 66085 30 100.0 36 .............................. TTATGGCACAGAAACGGAACCCGTTACGCGACGATG 66151 30 100.0 36 .............................. ACTTTTATCGAATCAGGCTTTGGCATTAACGGCGGG 66217 30 100.0 36 .............................. AAATGGCTTTTGACTTTTTGACATCGTCGCGGCTCG 66283 30 100.0 36 .............................. TAGTGTGCCAGTGCGCCACCTAAACTGTGCCCTGTA 66349 30 83.3 0 .................C.A....A...TC | ========== ====== ====== ====== ============================== ===================================== ================== 20 30 99.0 36 GTTTTTATCTAAGTAATGTGTAATGTAAAT # Left flank : GACGCTGAGCGCAACATCAGACCAGTACCGAATTCCGAGAAAATTTGGGATGCGGATATCGTTCTAATTGCCGTCGGATTTGCAGGCACAACCAAATCAGTGTTTGAAGATTTCCAAGTAGCAAAAACAAACCGTCACACAATCGATGCTAGAAAAGGTTTTTACCGTACCAACGTAGAAGGCGTCTTTGCATGTGGCGACGCAAGATACGGCCAAAGCCTCGTTGTAACAGCGATTAACGAAGGAAGAGAAGCCGCCCGCGAAGTAGACTTCTATTTGATGGGCGAAACATTCTTACCATGATAAAAAATCTGTCGACCTCCAGTAGCGTAAAAACTAGGGGACATCGACAGATTTTGTTTTTGCTTAGGGGGAGAATGGATTAGGATGGTTTTCGAGAGGTTGAAATAAATAATCAGGTGCAAAAAAGACAAATTTCTTGGAGGTCGACAGATTTGAGGTGTTGAGGTATGATGGGAGTAAGAGTTGAGAGGGTACCT # Right flank : CCCCAAAGAAGGAGAGACACCAAATGACTATGGAAAAATTAAAACTACGAGTCACCATAGACAGACCTATCGGATTTAAAGACGACTACGGAAATACATACCCAATAAACTACGGATTCGTTCCCGGTGTCATAGCCGGAGATGGCGAAGAACAAGATGTTTACATAATTTCTAAAAATGCAACAACTCCACTCGACATATTTGAAGGAATACTCGTCGCGGTCATACACCGGAAAAATGATACCGAAGACAAGTGGGTAGTTACCTCAAAAAATGAATTATTATCCAAACAAGAGATATCCGAAAAAACGCGTTTTCTAGAGCAATACTTTGATTCCGTTATCGAGCTTCTTTAACAAATACAACGGTATAAACGCTCACCTTCTCGTAAAATACCTAAATAAAAGATGAATCACTATTAAAAACAGCACACTAACCATGAAAAGACCACTCGATACCCAGTCCATAAAAAGGGATACAAATACTAAAATTACGAGAAC # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCTAAGTAATGTGTAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [1-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA // Array 2 69626-70832 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARYB010000008.1 Listeria booriae strain FSL L7-0278 NODE_8_length_113228_cov_41.554304, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 69626 30 100.0 37 .............................. TCGCTAACTGTTTATCAATACTTGTTTGAATTTCTGC 69693 30 100.0 34 .............................. TTAGCATCATTGTCTCTTTGTGCGCACACAAGAA 69757 30 100.0 37 .............................. CAAACTTCGGAAGGTAAAACTGCAAACGGCGAATTTA 69824 30 100.0 35 .............................. CGTCTCTACAAATGAATCTTTGTCAAAACCTAACA 69889 30 100.0 34 .............................. AAGACCGCTTTATCTAAGTCCATGTCTCCTCTGC 69953 30 100.0 34 .............................. AAAGTGAATAGCGCTTCTAATAACTGCATGCTAA 70017 30 100.0 36 .............................. AGTTTCGTCCCTGGACGAGACCAGTTGTTCACATCC 70083 30 100.0 35 .............................. AGAGTTTCGAAATGCAAAAAAAGCACTGTTTGAAA 70148 30 100.0 36 .............................. TCACCGCCGATAATCGAAAATCCGCCGTTATCTAGC 70214 30 100.0 34 .............................. AAAACTTACCAAGGTCTTTTTTGTAGATAGATAA 70278 30 100.0 35 .............................. CTTGAAAATGAGAGTTCCGTTTGGTTTCAATACAC 70343 30 100.0 36 .............................. TTTTTTACTTTGAATAGATTTGTGAAAAACAGAATC 70409 30 100.0 36 .............................. GTATGCCGCGCAGGTTGACCAGTACACATCACATTC 70475 30 100.0 36 .............................. GAAATCACATCATACTGAAAATCATACTGCATCGTG 70541 30 100.0 35 .............................. TCGACATTATTCCACAGCCACATGAACCCTGTAAC 70606 30 96.7 37 ................C............. ATGTTCCAGCTTCTAATAAATCTTGTTTTTTATAATC 70673 30 100.0 36 .............................. AAAGAATTATTAACGAAAAACAAGTCCTAAGGGGCT 70739 30 100.0 34 .............................. GCATCAGCGGGGAAATACCGTCGTCAACGATATA 70803 30 93.3 0 ...........G.T................ | ========== ====== ====== ====== ============================== ===================================== ================== 19 30 99.5 35 GTTTTTATCTAAGCAATGTGAAATGTAAAT # Left flank : AATGTTCCACCTCGACGAAGCCAACTGGAAACTGCATAAAAAAGACATCATCAGCAATACGAAAAACTGGGAACCATTCCAAAAAGAAGCATTACAACATGAAATGAGCAACTTTGAAGTACTAGATAAAGAACGCCTCGTTCAGAAAACAACATTTGGCGCGAATCTACAAGTCATAGCGAATTTCTCGAACAAGAATTTTGAGTACGAAAAGCAAATAATTCCTGCGAATAGCGCATTGATTGTGCAAGACGGGAAGAACAAGATAATTTCTACAGACAATTTTGATTCGTAATAACAGGAAGAAAATCTGTCGACCTCCAGTAGTGCGAAATAATGGGGGCATCGACAGATTTTTGTTATGCATTGGTACTAATGGGGTTAAGCCTATTTTCGAAGTTTGGGTTGTAAGGTTTGAGGGCAATAATTTAGCATTTTGTTGTCGGTCGACAGATTTGGGTGTTTGAGGTATGATGGGAGTAAGCGTTGATGGGGTACCT # Right flank : TGTACCTGCACAGCACGCAAGATTGGTAACTTACGGTTTTTATCTAAATTAAGAGGAATCCAACAAATAAGGCACTAGTAAAACGAATTGAATAACAAGAGGGTGGATATCCATTACTACACAATGGATATCCACCCTCTTATCTATTGACCTCTATGTTGAAAATTTTTAGCATGCAGTTAACAACAATTATCTACTCAAACTAACTACTTTGGTATCAAGCACGTTACCATTGATATCGTAAGCAGTGATGTGCGCGCTATCAGTCGTATTAAGGATGACCGTTTTTGCATAATATTTAATAGCTGGTGCAGTAACAGGGATTTTAACGCCCTCTACACCATTCACAGTAAGGCTAATCTTTGCTACGTCGCCAGAGAATTGACCAGTAACATAGCCTTCTTTACCAATTACAAATGGAGCAAGTGTGGTGATAGAACCGGTTGCTACAATTTGATTTGCGAGAGTGACAGTTTTTGTGTCCAGTACTCTACCATTGG # Questionable array : NO Score: 3.23 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCTAAGCAATGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA // Array 1 803478-802399 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARYB010000001.1 Listeria booriae strain FSL L7-0278 NODE_1_length_932804_cov_40.356159, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 803477 30 100.0 35 .............................. CGCCTTGTTGCCGTTCACGTAAAAAAAGTAATTAC 803412 30 100.0 36 .............................. TGTATAGCGCTGGTATTAACGCTGCTAAGGGGATTA 803346 30 100.0 34 .............................. CCTAGCGGTATGATTACAGGTGGATGGGCATCAA 803282 30 100.0 35 .............................. ATCATTTAAATCCCTCCTAACTCATATCCAATGAT 803217 30 100.0 37 .............................. CAATGAAGACTCGTCTGCGATTGTGGGCGACTCCGAA 803150 30 100.0 36 .............................. CTCTATATACTGATTTTATCACAAATCAAAAACAGT 803084 30 100.0 36 .............................. GTTGCAAAAGGTGAAACTCCCCTTCTTGATTCTAAA 803018 30 100.0 37 .............................. TTTTAGCAAATAAAATTATCATCGATGAATTTCCAAT 802951 30 100.0 34 .............................. AAAAAATATCGTAATGAGGATTAATAGGGAGTGA 802887 30 100.0 35 .............................. ATTGATTCGTTTTGATCAACAAGTTTCATACCAAA 802822 30 100.0 36 .............................. CGTTTCAATGTTCAAAATCCCGTTCGCTACCGCTAC 802756 30 100.0 35 .............................. ATATGAGTTGACATAAGTTTTTATTCATTACCTAA 802691 30 100.0 35 .............................. TATTGCTAGTTGCGTTTGCTACCGCCTTAATTTGC 802626 30 100.0 36 .............................. TAGTTCCAAGCCTCCCAACAGTGCTATAAATAAATT 802560 30 100.0 36 .............................. CCCATTGTTCCTTGTGAAACAACTAATCCATATTTT 802494 30 100.0 37 .............................. ATCCATTTCATGTAATCCTTTGCTTTATCTGCCGATT 802427 29 83.3 0 ..C..............A....-.C..G.. | ========== ====== ====== ====== ============================== ===================================== ================== 17 30 99.0 36 GTTTTTATCTAAGTAATGTGAAATGTAAAT # Left flank : GGCGAGATGGCCGGCGATCAAACAGCTGTACCATTGTTGTTAGGAATGGGTCTAGATGAGTTCTCTATGAGCGCATCAAGCATTCTAAAATCACGTTCATTAATCAAACGCCTAGATCGCACAGAAATGGCGAAACTAGCGGACGAAGCACTACAACAAGCTACAGAAGAAGAAGTTGTAGCGTTAGTTAATAAATATACAGCGGAGTAATTTCGTTGTTTGGAAGGCCCGAGGATTTTCCTCGGGTTTTTCTTTGTGGGGAAAGAGGGGATGGATGATAAGTGGTGTTTGGTAAGGTGGGGACAAAAATCTGTCGACCGTCGGTAGTGTGGAATTTAGGGGGCATCGACAGATTTTTGTTAAGCATTGGTGTGATTGGATTTGAGGCTGTTTTTGGAGGTTGGGTTGTAAGGTTTGGGAGCGAAAATTTAGGATTTGGTTGTCGGTCGACAGATTTGGGTGTTTGAGGTATGATGGGAGTAGGCGTTGATGGGGTACCT # Right flank : TAGATTGCTCACAAATGCAGTGTTTTTATCCATTTTTTACAGAATAAATTATCATTTAACAGCCTCCAACCAACTCCATTTGCATTTTTACTCCCCCAGATGTACACTTTGTTTAGAAGCGAACTGTATAGAAGGAGGAGTTTTTGCGATGAAGAAAATTGGATTTATTGGTGTTGGGGTTATGGGCGCTAGTATGGTGCGGAATTTGATGGCGGCGGGGTTTGAGGTACATATTTATACGCGGACGAAAAGTAAGGCGGAAAGCGTGATTCAAGAGGGGGCAATCTGGCATGAGACACCGCAGGAATTGGCGCCTCAGGTCGATGTGCTTATCACGATGGTTGGATATCCGACTGATGTGGAGGAGCTTTATTTGGCGGAGGATGGGCTGTTGACTACGCTTCGTTCAGGAGCTATTGCTATTGATATGACGACTTCTTCTCCGAATCTTGCGAAACAAATTGCTGAAGAGGGCAAGGCGCTGAACATTGCGGTGCTGG # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCTAAGTAATGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA // Array 1 329085-327942 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARYB010000003.1 Listeria booriae strain FSL L7-0278 NODE_3_length_479822_cov_49.459042, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 329084 30 93.3 36 G...........C................. AAAATTCTTTATCTGAAATCAAATGTACGCCAATAC 329018 30 100.0 36 .............................. TTTTTTTAAATCGGATATCGTTTTACATTCGGAATT 328952 30 100.0 36 .............................. CTAACATCGTCGCAATAACTTTTCAATAAGCGGTAA 328886 30 100.0 34 .............................. GTAATTGTTTGACAGACAGCAGACTAATATCGTC 328822 30 100.0 36 .............................. ACACTTTCATCTGGATCAATTAAAATCTTGAACAGT 328756 30 100.0 38 .............................. ATCTAATGTCATTAAGCGGCCTGTTGAACAAGGCAGAC 328688 30 96.7 35 ...........C.................. GACATTAAAAAATATTGATGCAGGACAAGAACTAC 328623 30 100.0 37 .............................. TAACTTTTTCCGACGCAGACGCAACGCGCATTATACT 328556 30 100.0 38 .............................. GATGCCAGAGCGCTGGCGTTTGAATTGCATACACTAAC 328488 30 100.0 36 .............................. CGCTTTCATTTCAGCGCCGCAGCTGGGGCAGAAGTT 328422 30 100.0 36 .............................. AAAAGCACATGGGGATATCAAACTCACCTTGCAAAG 328356 30 100.0 35 .............................. CAGGACATCTATTCATTTTATCAAAGTGTATATCT 328291 30 100.0 34 .............................. TGATTAGCTTGGCGCTTAGGGAAGTGGTGTTTGC 328227 30 100.0 36 .............................. TTACCAGTTCTAAACAGTTATCAAGGTTTTCAGATC 328161 30 100.0 35 .............................. AAAAACAGTCTTCTCAAAGCCGTTCGTGAGCTTGA 328096 30 100.0 37 .............................. TTGTCTTCGCCTAATGAACCGAAGAGCGCACTTGTTG 328029 30 83.3 28 CG...........C...A......A..... TAGGAAAAGGGCGGACTTATACACCCTG Deletion [327972] 327971 30 76.7 0 C........C..A..C.A.....CA..... | ========== ====== ====== ====== ============================== ====================================== ================== 18 30 97.2 36 ATTTTTATCTAAGTAATGTGAAATGTAAAT # Left flank : AAGATTTGGTGGTGAGATATGTATATTATCTTAATTTACGACATAGCAATGGATAACGGCGGTCCGAAAGTATCGAGAAACATTTTCAAAATCTGCAAAAAATATCTAACTCATGTACAAAAATCGGTATTCGAAGGTGAAATCACACCAGCACTACTTGCCAAATTGCGAATGGAATTAGACCAGTATATTCGTGACGAAGAAGATTCCGTCATCGTGTTTTCTAGCAGAAATGAAAGGTGGCTGGAAAAGGAGTTTTGGGGCGTTGCGGATGAGAAAACTTCGAATTTCTTTTAGTAGATAGAAAAATCTGTCGACCTCCAGTAGTGCAAAATAATGGGGGCATCGACAGATTTTTGTTATACATTGGTACTAAAGGGTTTAAGCCTGTTTTCGGAGTTTGGATTGTAAGGTTTGAGAGCGGGAATTTGGGATTTGGTTGTTGGTCGACAGATTTGGGTGTTTGAGGTATGATGGGAGTAGGCGTTGATGGGGTACCT # Right flank : CAATTTGTTTAGCTACGATTGCTTTGGCAGACAATCTCTGTCTACCAAGCAATGTTCGTAGCCAGTATACTCTACTTTCCAGCTCTCACAAAAAATCCTCACGATAATCTTTAACATACTGATCAAACGAAGTAGCCTCACGGTGCAGCAATTCCTGTGCTGTTGGGGTTATTTGTTTTGCGTTTCCCATTTGGGTAATGAAGTAAAGCATGGTCATGACGTTGGCGAATGCTTTTGGGGTTCCTCGTTTTATTATGGTTGCGCGAAATCGTAATAGGGAGGGCTTGCTGTATGTTATTTTTCTCCCTAGAATGGCTGTCATCTTCTCTGCCACTTCATAATACGTCAATGCTTCTTTTCCGGTAATACTATACTTTTGTCCGATATGTTGGGGTGTATTCATCAGGCAAATAGCAGCGATCTCCCCAATATCACGCGTATCAATAAAGCTCGTCCGCGCATTGCCCGCAGGAATGAATAAATCATCATGTTTCTGAATA # Questionable array : NO Score: 3.12 # Score Detail : 1:0, 2:0, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTTTATCTAAGTAATGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:83.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [12-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [60.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA //