Array 1 219244-218015 **** Predicted by CRISPRDetect 2.4 *** >NZ_MTAK01000002.1 Pectobacterium odoriferum strain Q106 Scaffold2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 219243 28 100.0 32 ............................ ATGTATTCGCGGGATACAAATCATCGGCGTCC 219183 28 100.0 31 ............................ GCTGGTATCAATGATTTTTTGCCGCCTTCGT 219124 28 100.0 32 ............................ GCGACAGGCACACAAATGTGTAGCCACTGGTT 219064 28 100.0 32 ............................ AGAGTTGAGAAGGAAAATCGGGAATAGGGCCA 219004 28 100.0 32 ............................ GGAGGGGTTGCCGATGGATATGGAACAGGAGC 218944 28 100.0 33 ............................ AGGCGATAACGGTTCCGTTATTAGCAATAAAGA 218883 28 100.0 32 ............................ AATATCGTGATGGGGGTATCGGCTTTTGTCAT 218823 28 100.0 32 ............................ ATGCCCACGCCAAAGTTGGTGCCCGCGCCTTT 218763 28 100.0 32 ............................ AGTGATAACCCTCGTCTTTGTTGACGAAAATC 218703 28 100.0 32 ............................ AGCGGCTTTATTCCACAGCGGGAACTGGTTGG 218643 28 100.0 32 ............................ TAAAACATTTATACCTTTTTGAACCTAATAGT 218583 28 100.0 33 ............................ CGTCACTGCTGGGGATTTGGCTTCCAGTACCAG 218522 28 100.0 32 ............................ CGCGCCGGATGGCCTCAGTCTGACGCACACAG 218462 28 100.0 32 ............................ ACAGTAGAGCTTTGTCATTCCGGCATTTTGGA 218402 28 100.0 32 ............................ GTTACATTTGAACTGTCCGATCTGCTATATAT 218342 28 100.0 32 ............................ TGATGGTCGCGGTGGCAGTGGCATGGAGCCGC 218282 28 100.0 32 ............................ ACTGTCTGAGGCTCAAGTGCAATTGGCATTAG 218222 28 100.0 32 ............................ AGACCGCGTGGGTGCGCTCACTGACGAATACC 218162 28 100.0 32 ............................ GTACAAGCGGATGGTTTTCAGTGACTGATACT 218102 28 96.4 32 .................T.......... TTTGCCGCGACAGTCCAGACGAGCGATGGAAT 218042 28 75.0 0 ...........T.C........CG.TGC | ========== ====== ====== ====== ============================ ================================= ================== 21 28 98.6 32 GTTCACTGCCGCATAGGCAGCTTAGAAA # Left flank : AGGCGCTCTCTACACTGGAGCAAACGGCCTGGCTGAAAGGATTGCGGGATTACACGCAGGTTTCTGCGTGTACAGCCGTACCTGACGGCGTGAAATTTCGCACCGTGCATCGCGTTCAGCTCAAGAGCAGCGCCGAACGGTTACGCCGACGCTCGGTCAGCAAAGGCTGGCTGACGGAAGCGGAAGCCGCAGCACGTATCCCCGATGCCGTGGAAAAACGCAGCGCACTGCCGTTTGTGCAAATCAAAAGTTTGTCCAACGGGCAGATGTTTTTCGTGTTTGTGGAACATGGCCCGCTACAGGACACTCCTGTCGCTGGCCGTTTCTCTTCCTACGGTTTAAGCGCAGAAGCCACCGTTCCGTGGTTCTAACCCTTTTTTAGCGACCAACTGCAAGCTATTGATTTTTAATTGCAGTTGGTCGCCCTAATAAAAAAGGGCTTTTCGCCAAAAAAGTGATATTTCCTTTAATAATCTGGTGGTTAGCGTAAAAACTTAACG # Right flank : TTATAGGAATGCGTCGCTGGCGCGACGCATTTCGTGGAGTTATTCCCCGTTGAGCGTGACAACCAGCGAGCGGCTACCGCCGTGGTTGCGGTGTTCGCACAGGTAGATGCCCTGCCAGGTGCCGATGTTCAGGCGTCCGTTGGTGATGGGGATCGTCAGGCTGTTGCCGAGCAGGCTGCCTTTCAGGTGCGCGGGCATGTCGTCGCTACCTTCATACGTATGGCGGTAGTACGGTTCATCCTCCGGCACCAAGCGATTAAAGAAACTCTCGAAATCCTGCCGCACCGTGGGGTCGGCATTCTCATTAATCGTTAGCGCCGCCGAGGTGTGTTTGATGAACACCTGCATCAGCCCGACGTTTATCTGACGCAGTGCGACAACCTGCGCCAGTATCTCGTCGGTCACCAGATGGAAGCCTCTGCTTTTCGGCTTCAGGCGGATTTCATATTGCGTCCACATCGGCGTCCCCTGCTATCAGGCTTCACGCGCCAGAATAGGTC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [45.0-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 227826-228033 **** Predicted by CRISPRDetect 2.4 *** >NZ_MTAK01000002.1 Pectobacterium odoriferum strain Q106 Scaffold2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 227826 28 100.0 32 ............................ TCCCGCAATGTCTGCGAAAGACGTGACACCAG 227886 28 100.0 32 ............................ AATCAGAGCCAGAACATCGGAGACAGCATCCC 227946 28 100.0 32 ............................ TTTGTTCGTTCAGCGTCTAATGCCGCTATTTG 228006 28 78.6 0 ...........C.C......T...TCC. | ========== ====== ====== ====== ============================ ================================ ================== 4 28 94.7 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : GCGTGACGGAGGTGCCGGTCCCCAGCATGACAACGCTGGTATTGGCGATGGGGATATTCCAGTACAGAGACTGGTTTCCTTCTTCCGTGACATATTCGACACGGCCACCGTTAACGAGAATGCGGCAATGCTGGAGGTAATAAACATTGGCACGTTTGGAATGCAGAATGGTTTTTAAGTCCGAAGGGCTAAAGGCGTTATCCATAATGTATTTTCTGCCGCAATCGATAATAGCTGTGACGCCAGCGAAATAAATCGCATGCTAACTATTTGATAAGAAAAAATATAATCTTCAGAAAACTAACGAAAATCAGACTATCACAAATATTCTGGAAAAATGGTGGCTGCAAAAAATATTACCCAAACGCAGACCCTTTTTATTTGGCCTATTTCACAGGATTAAAAATCAATAAGTTACCGCTGAGCTGAAAAAAAGGGTTTTTGCGGCGAAAATGGCAATTGCTGCTAATAAAACAAACCGTTAGAGTAATCGGGCTACT # Right flank : ACGACCTTAAGCGCTGTTGTCTGGCTATTATCGAGGTAGTACTGCGCCAGCGCTCACTCCCTTAAATAACGCATATTGATGGCCTTCTTTCGTAACGTTTTTAAGTAATTAGTTTCTTTTAGAGGGAATGAAAAATTGTGGGGATGGCATTATTAACATTTAAAAATCATCATTTTTCCGTTAAAGTGTCCTTATAGGGGAATAGCACGTTGACTTAAGTCAAATTCAAGGGAGTGAGTGACTGTGAAATACGATCCCGTTTTAAAAACGCTTGTGGATGATGACTATCGGTTAGAAGATCATCTTGATTTTAAAAAACAGCATGCAGATATTAATTATCAGAAATTACATGCTCAACTAAATGAAATAAATAACGATAATATTCATGCCATATTGACTGCGCAGGAAGCGACGTATTTTTTAAAGACGTTATGTACACCAAACCCTAACGAATCGTGGAAAACGGCGATATTTGGCTGTACCGATCCTACTTCATCGTT # Questionable array : NO Score: 5.60 # Score Detail : 1:0, 2:3, 3:0, 4:0.74, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [58.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //