Array 1 588-132 **** Predicted by CRISPRDetect 2.4 *** >NZ_VETL01000209.1 Escherichia coli strain KCJK8741 NODE_209_length_606_cov_4.058455, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 587 29 100.0 32 ............................. GCTGATGCGGTTCTATCACCACCACAAATTAT 526 29 100.0 32 ............................. CAAATACGCGCGAGTGGCTAACCTGGAATCAT 465 29 100.0 32 ............................. GCGCGGACGATAATCAGGGGCAGGCAGGGCAC 404 29 100.0 32 ............................. AGGTATATGAAATTGAAGAAAGCTGCCCCATC 343 29 100.0 32 ............................. GAAATCCAATATTAACGTGGTGTTTTCAAAAC 282 29 100.0 32 ............................. CGTTTAGCTCCGCAATGCTGGATATCACTGAT 221 29 96.6 32 ............T................ TATGGGAAACAGTAGCAACGGGCACACTGGCG 160 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================ ================== 8 29 99.2 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : ATAATAGGTTATGTTTAG # Right flank : ACCATATAACCCGTAATCTCTTTCTAAAGTTTTTATATTAGCAGTACTCGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGCTCTCCATATATGAGAAGTTCACGATTATCGATACAAAAA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-25.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 79373-78612 **** Predicted by CRISPRDetect 2.4 *** >NZ_VETL01000010.1 Escherichia coli strain KCJK8741 NODE_10_length_88025_cov_7.757924, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 79372 29 100.0 32 ............................. GACTCAGTTTTTCCCTGCTGACCCTCCGAAGG 79311 29 100.0 32 ............................. CCATGCCGCGCCAGCTCTGCGAAACAGCCCGC 79250 29 100.0 32 ............................. GCGGCACTAACGTGATAATCACGATCAATTAT 79189 29 100.0 32 ............................. TGACGGTCCGAAAAAAGTTGGCTGAAGAAATT 79128 29 100.0 32 ............................. GTTATTGCGTTTTCCTCACCTGCGGCGAGTCC 79067 29 100.0 32 ............................. CATTCCGTGCAGCGGTCTGAATAATTGCCGCG 79006 29 96.6 32 ..........................T.. AGTAACGACGAAAAAATACAGGCACGGGCCAG 78945 29 100.0 32 ............................. ATCCCCGCAGGTATCGCGCAGCTATCGATCGA 78884 29 100.0 32 ............................. GGGTATAAAATAATATCGAACGCAGCAGCAAC 78823 29 100.0 32 ............................. GGCAGCGCGAAACGCACGCCGACACGCTGGCA 78762 29 96.6 32 ............C................ CAGCGTTATGCGACGGGTGAAGACGCCGACGA 78701 29 96.6 32 ............C................ GGTAAAAACACGGTCTGAGCCGACATTCATGT 78640 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 13 29 99.2 32 GTGTTCCCCGCGTCAGCGGGGATAAACCG # Left flank : GTGCTTGCCGCAGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGCTGGGCGATAGCGGTCACCGGGGACGCGGCGGATGAGTATGGTCGTCGTTGTTACAGAAAATGTCCCTCCGCGCTTACGTGGACGGCTCGCGATCTGGCTCCTGGAAGTGCGTGCCGGTGTTTATGTCGGAGATACGTCCAAACGTATTCGGGAGATGATCTGGCAGCAAATCTCTCAACTGGCAGGTTGCGGAAATGTGGTAATGGCCTGGGCGACCAATACCGAGTCGGGTTTTGAATTTCAGACCTGGGGTGAAAATAGACGTATTCCGGTGGATTTGGATGGGGTGCGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTATCTGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTTTTTAAAAACAGTTATGTATGCTTAGT # Right flank : GACGCACTGGATGCGATGATGGACATCACTTGGAGTTCCCCGCCCCTGCGGTAGAACTCCCAGCTCTCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAGCGGTAGCATTATCCGCATAACATCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGTTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCAGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAATTTGTTGCTTCTACCGAAAGTACGGCAATACCGGCTTTGTCGAAAACTTCGGCATCATTACAACAGCCAGTACCCTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCAATTCCATGACTACGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGTCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [40.0-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //