Array 1 231469-233087 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACWJM010000001.1 Streptococcus agalactiae strain 612 NODE_1_length_276821_cov_21.5538, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 231469 36 100.0 30 .................................... CATGCCTTTGAAAATAAATTCCGAGCCATT 231535 36 100.0 30 .................................... ACTTCATTGATGTTTTGTTCAAATTTCTCA 231601 36 100.0 30 .................................... CAAATTATAGCTAAGTACCCAAACAGTATT 231667 36 100.0 30 .................................... TTGTTTAGCAACATAGTCTAATGTTGCATT 231733 36 100.0 30 .................................... ATCGAGCTCTTGAGTATGAAGATTATACTT 231799 36 100.0 30 .................................... ATGGCTAATTATTGCGTGATGTTAGCGGTT 231865 36 100.0 30 .................................... CGTAAGCCAGTTCTTTTATTGTGTCTTTAA 231931 36 100.0 30 .................................... CGTAAGCCAGTTCTTTTATTGTGTCTTTAA 231997 36 100.0 30 .................................... AAAATAACATCCCCTACTTTTAAGTTGATA 232063 36 100.0 30 .................................... AAAGTCATCTTTATTGACTGTTTTTCCTTC 232129 36 100.0 30 .................................... TTACAAAAAGTTTTTAGATTACACGCAAGA 232195 36 100.0 30 .................................... AAGACTTAAAATCGATTAGAATTGATTTTA 232261 36 100.0 30 .................................... AGACAAAGAAGATGGCAAGTCTATCAACAA 232327 36 100.0 30 .................................... GCTTGGTCTCGAAGAATTACAGAAGAACAT 232393 36 100.0 30 .................................... CAATTGATTGCCGTTAAAACCGATAGAGGA 232459 36 100.0 30 .................................... ACAAGAAACAAACAGCCTTGATGACTTAAT 232525 36 100.0 29 .................................... CAACCCTATGTTTGATAATATTTTAGACG 232590 36 100.0 30 .................................... AAGTGAAGTTGAATTTTATTTGAGATACTA 232656 36 100.0 30 .................................... TAATACTTTTACAATATGTGTTTTCACTAC 232722 36 100.0 30 .................................... AAGTGCCACAGTTTGTGGCTGATTGGATTG 232788 36 100.0 30 .................................... CATTCAAGGACTACCCTCAACAGTAACTCT 232854 36 100.0 30 .................................... ATAATATATTATATAATAAATATAGAAATA 232920 36 100.0 30 .................................... TTCTATCTTCTGAAGATATTTCACAAGTGA 232986 36 100.0 30 .................................... TCTTCTTTTTAATTCTTCTAACACTCCATC 233052 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 25 36 100.0 30 GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Left flank : ACGAAAAGCCAGAAGTGAAATCAATGGTAGAAAAATTAGCAGCTACTATTACAGAACTTATCGCATTTGAGTGTCTAGAGAATGAGCTTGATTTAGAATACGATGAAATTACGATTTTAGAACTCATTAAGGCACTGGGAGTCAAAATTGAGACACAGAGCGACACTATCTTTGAAAAATGTTTTGAAATTATACAAGTTTACCATTATTTAACGAAAAAGAATCTCTTGGTTTTTGTTAATAGCGGAGCTTATCTTACCAAAGATGAAGTTATAAAATTATGTGAATACATCAATTTAATGCAAAAGTCAGTACTCTTTCTAGAACCTAGAAGACTCTATGATTTACCGCAATATGTTATTGATAAGGATTATTTCTTGATAGGCGAAAATATGGTATAATATTAGTAAAAGCACAGTAATAACAAGGAATCATCGAAACTGAAGTCCTGCTGAGACGAATGGCGCGATTACGAAAGCTCAAAAGAAAATTTTCTACGA # Right flank : CATCTTCTTTTGACCTAACAAAAGGATATGTGTTTTAGAGCTGTGCTGTTATTATGCTAGGACATCATTGTGGTGTTCTAGTTTTTTGTTATACTGAAATAAATTTTCAGAGAATGTGGGGGAAGGCGGTAATTAGATTAATTCAAGACGTAATTCAGAACTTAGTTGGCCAAGCTAACGAAATCACCCCAATTTATCAGTTTGATTGGGAAACTTATATATTGGCGACTAAAAAATATGAACGTCATTTAGAGGTGTGTCTATTAGTAGAAAATTCGAATTGTTTTTCGGATTCAAAGAGAATGTGTCAATAAAAGAGATATGAAAGGCTATAATTCCAACCTTATGGTTAAAGGGCTAGGTTGTTCTACGCTTTACTTAATTATTAGTTTGACAGCGTTGGTTCTTTTAGTGATTGCTGGTGTTTTCTTTGTCATTAATACTTGCAAGCTTACAAGGAAAGCAGTGGAGAACCTATCCATAATCAACTAACAGCTATG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.70,-0.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [56.7-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //