Array 1 2683175-2682346 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP065748.1 Delftia lacustris strain FDAARGOS_890 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 2683174 32 100.0 34 ................................ CGTTGCATTGACGCTGGGCATCGCAACGGATCTC 2683108 32 100.0 35 ................................ GCCAGATGGCACGCACCCCTAAGACAACAATGGCC 2683041 32 100.0 34 ................................ TGGCTGAGACTGCAGCCCTGCGTGAGGCAGCGAA 2682975 32 100.0 36 ................................ GATCAGCCCAGCAGCAGGGCCATGTGCTCGCGCTTG 2682907 32 100.0 36 ................................ GGCGAGCAGATCAAAAATCGGCTCTACGTAGTCATC 2682839 32 100.0 34 ................................ AGCTACGGCCCGTATCGCTTGGCCTGGGGTGTTT 2682773 32 100.0 34 ................................ AGAAGCTCGATGATGCGCGCCACGACTCCGTTGT 2682707 32 100.0 35 ................................ CTGGCCTCCACGGGCTACAAGGCCACCCTGCAGGC 2682640 32 100.0 33 ................................ TCGCCGGCCCGGTAGGCGCGGTCTGCAGACTCG 2682575 32 100.0 32 ................................ TGGCCCGCTACATGGCCCCCGCCGGCGATGAC 2682511 32 100.0 35 ................................ TCCCCATGCGAAGCAGTCGGCCATCATTTGTGATC 2682444 32 100.0 35 ................................ CAGACTGCGCCCGAGGGCTTGGCCACGCCGCCTCC 2682377 32 90.6 0 ..........A.......AT............ | ========== ====== ====== ====== ================================ ==================================== ================== 13 32 99.3 34 GTCGCGCCCCGTGCGGGCGCGTGGATTGAAAC # Left flank : GGCGTGAACTACGTGACCGGCGACTACTCGCGCGGCGTCAGCGGCTTCTGGGTGGAAAACGGCGAAATCGCCTTCCCCGTGCATGAGATCACCATCGCCGGCAACCTCAAGGACATGCTCAAGGGCATCGAGGCCGTGGGCGCGGATGCCTACAACTACGGCGCCAAGACCGTGGGCTCTATCCTGATCAACCGCATGAAGGTGGCTGGTAGCTGATTGGCTTGCGGCTGCGCATGCTGAGGAAAAGCGGCCTGAAAGGCCGCTTTTTTGTGGGCACCCAGTCACCGCGTGCCCCGGACGCAGTTGGCCGCACCAGCTCGCGTCCCGCGAACCCCAAGTGACCTTTGTCCTCCCCTGAGGTTCGCATTTCTGCAAGCCGTTGTTTTTGTTGAGGCATCACTGCGTCTGTCGTGGTCCTTGCCGTTTTTCCGTGACAGAGCGCGCAGGTTCGCGATGGTGAAGCTTTTTTTGCAGTGGTACGGCTGGGTTATAAGCATGCC # Right flank : ATGGCCATCAAGCGCGAAATGACGGTTCGTGCAATCGCTGACAGCCCGATGCCTGCATGCCGGCAAGGCGCTGTCCTACTGGATGTGCAGGGTTTGGGAAGGCGACACGACTGATTCAAATTGTCAAATTTGTTCCTGAATGTGTTTCCTCCGTGCCAGCAGTCTGGCCGGTTTGCGTAGGTGGTTCGAGGGAGAGCGACGTGGGTTTTCTGAGGCGTATGAAGTTGGGAACCATGCTGGGCATGGGTTTCCTTGCGGTGATCGTGGTCTGCGTGTGCGTGGCCGGCTTCGGCTGGATGAAGCTGCACGATCAGGGGGAGCAGTTGCGTGTTTTGGCCGAGGACCGCATGGGCAATCTGGCCCGGCTGCAATCGCTCAAGGACAACGCCAATGTGTCGGCGCGGGTGGTGCGCAATCTGGCGCTGATCACCGATCCGGCGCAGATGGCCGAGGAGAGCCGCCGGCTGGATGAGGTGGTCGCCAGGAACGGCCTGGTCATG # Questionable array : NO Score: 9.22 # Score Detail : 1:0, 2:3, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGCCCCGTGCGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCGCCCCGTGCGGGCGCGTGGGTTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.80,-6.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [41.7-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,9.41 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 2705068-2704704 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP065748.1 Delftia lacustris strain FDAARGOS_890 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 2705067 32 100.0 36 ................................ TTCAACGTCGCGCATGAAGTCTCGGCGGCTCAGATT 2704999 32 100.0 35 ................................ GTGGGTGGTCAGGGCTGGCATGGCGGGCTCCAGGT 2704932 32 100.0 34 ................................ ATCGCATCGCGCACGATCCCAGTAGTCGCGCCGG 2704866 32 100.0 34 ................................ ACGGCGTGCTCCACAAAGCCCACCCCGCCCTCGC 2704800 32 100.0 33 ................................ GACCCAGCTCCACGCTGTACCCGTGCAGCCCCT 2704735 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ==================================== ================== 6 32 100.0 35 GTCGCGCCCCGTGCGGGCGCGTGGATTGAAAC # Left flank : CCGGCGATGAGAAATGAGGTGTGCCGATGATGGTCCTGGTGAGCTATGACGTCCGTACCCAGGACCCGGATGGTGCCCGCCGCCTGCGGCGCATCGCCAAGGCCTGCCGGGACTTCGGCCAGCGCGCGCAATACTCCGTCTTCGAAATAGAAGTGGACGCCGCGCAATGGGTCGCCCTCAAGGCGCGGCTGATGCAAATCATCGACCCCGCCCAGGACAGCCTCAGGTTCTACTACCTGGGCCAACACTGGCGCAGCAAGGTCGAACACATCGGCGCAAAGCCCGTGCTGGACCTCGACGCCCCCCTCGTCTTCTGAACCTCCGCGCGAACCCCAAGTGACCGCCACCTGCCCTTGAGGTTCGCGGCCGCGCAAGCTGTTGTTTTCAAAAGGGGGTGTGCGAGGGATTGGCTGAACGCCGATTCCGCGGCATGACAGCGCCGCCTGGTTCGCGGAAGCCTGGCTTTTTTCATAGCGGTGAAATTGCTCTATAAGTACCCC # Right flank : CCCTGCCGCCACAGCAAGCGCCCCACGCATTTGAAACGAATCGCCGGACTCATTCCTCGCCGCGCAGACCGCCATTGAGAGAGAGTCCAGCCACTGCCTGCAGCAGGTACCCGCGTGCCTCATCCAGCGAGGGACCCGCATGCCCATCGATCCGCCGGATATAGGGAGACGTCAGCACAGCCAGGGCATGGCCATCGGGCCCGAGGATGGGGCAGGAGATGTCCACCACGCCATAGGACTGCAGGCTTTCGCTCTGCTTGTGACCCGTGCTGCGTATCTGTTCCAGCATGTCGTGCAGTTGTGCCTCGGGCAGATGTACCTCGCCTTCCAAAGGCGTGTGCTCGGCCAGCATCTGCGAGCGGCGTTCGGTTGTCTGGCAGGCCAGCAGCACATGGCCTGACCCGGTGTCCAGCAGCCCGACGCGTGCGCCCAGCCTGATTGACAGGCCCCAGTTCCCGGGGCCGGGGACCTGGGCCACGATCAGGACATTGCCACGGTCG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGCCCCGTGCGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCGCCCCGTGCGGGCGCGTGGGTTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.80,-6.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [36.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,9.27 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 3 3941693-3941424 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP065748.1 Delftia lacustris strain FDAARGOS_890 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 3941692 28 100.0 33 ............................ ACTGGAAGGCTCACGGCAGCGACAAGTACCCCC 3941631 28 100.0 32 ............................ TGAAGCCCGCATGAATAAAGGCTTTGCTCCCG 3941571 28 96.4 32 .........T.................. CCCTTGGCTGCTGCCTGGGCTGCGCGCTCTGC 3941511 28 100.0 32 ............................ TGGCAGCAGCGCCCCAGACACCTGCTGCGCCC 3941451 28 96.4 0 ............A............... | ========== ====== ====== ====== ============================ ================================= ================== 5 28 98.6 32 GTTCGCTGCCGCGTAGGCAGCTCAGAAA # Left flank : CCGCGCTGCGCGGCCTGATGGAACAGCCCTGGCTGCAGGGCATGCGCGATCACGTGCACTGCACGCCACCAGCTTTGGTGCCAGAGGGCGCCGTGCCCTACCTGGTGCAACGCCGGCAATTCAAGACCAGCCCCGACCGCCTGCGCCGCCGCCGCATGCGGCGCAAGGGAGAAACCGCTGAACAGGCCGCGGCCGCCATCCCCGACAGCGTGGAGCGCACCCCGGACCTGCCCTACGTTCAACTGCGCAGCGCCAGCACCGGCCAGCCGTTTTGCCTGTTCGTGGAGCAGAAAGCGGTGCAGGGCACGGCGGGCCAGGAAGGCTTCAATACTTATGGGCTGAGCCTGGGAACTGCTGTTCCCTGGTTCTGACCCTTTTTCTGGCGGCCTGAAGACTGCCTTGTAAATCAACAGCTTGGCGGATGCCCCGGAATTTGGGGTGTTTGCCAGCTGGAGGTGAAAGCTCTTTCAAAATCAATGGATTGGGGAATTTTTTACCTA # Right flank : GCACGCACCCCCTCTCTTGGCTAGCCAGAGGCAGATGCGCAACTACGCGGTGCCCAATGCGATCCGGTTAAAGGCCGTGACGGCAATGAGCGAACAGACCGGCGCTCTCACGGAGCCTGCTGGTGCCACGCTGCAGCAGGGCGCCGCGCCTACTTCACCCGGCTTTCCTCCACGTGCTCCACGAAGGAGGGCGCTTCATTGAAAAGTTGCACGAGCTGCGCCAGGCGCAGGCCATAGGCGCATTGGGGGCGGCTGAACGCCTGGGCGGCCAGGACGATGGCGGCGCGGGCGAGGAACCATGCGTTGTCGAACTTCCATGCCGCGTCGAAGTGGGTGAGCTTCATCTGCCGGATGTGGTTCAGGGCCAGTTCCGTGGCCATGTCCACGTCGGCGTCCTCGTCAACCCAGTCCATGTCGGCGCAGCGCTTGTCGATCAGGGCGGCCAGCTCGGTTTCTGCGCGGTCTATGGACAGGGCAATCATCTGCTGCATGCTGGGCTT # Questionable array : NO Score: 5.99 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCGCTGCCGCGTAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCGCTGCCGCGTAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [35.0-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //