Array 1 257625-257837 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACHDO010000001.1 Nocardiopsis metallicus strain DSM 44598 Ga0415211_01, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 257625 30 96.7 31 .............................A TCGAACACGTGTGCCCCGAGCGCCTGGACGA 257686 30 100.0 31 .............................. AAGCCCGCCACCCCCAGCGCCAGCGAGATCA 257747 30 96.7 31 .............................G CCTCGGGGACGCTCATCCCGGTTTCGGCGGT 257808 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== =============================== ================== 4 30 98.3 31 CTGCTCCCCGCGCACGCGGGGATGGACCCC # Left flank : CTGGATGTCCGCCGAGCCCGCCCGCGTCGCCGGGGTGCCCGGAAAGGGCTCGATCGCCCCGGGTCTGGACGCCGACCTCACGGTCTTCGCCCCGGAAGAGACGGTCCGTATCGAAGCCCGCTCCCTGGCCCACCGCAACCCCGTGAGCGCCTACGACGGTGCCGACCTCGTCGGCAAGGTCCGCCGCACCATCCTCCGCGGATCCGACGTCGGTCCGGACAGCACCGACGGTCGGATGATCACCCGGAGCTAGTTCCCCGAGTTGCCCGGGCGCCCCGCCACAAGGTGGGGCGCCCGTTCGCATCCAGGGGGAGAGACACCCGAGGCACCAGCTCATAGGCTGAACCCAACGAAGCTGCCTCCCCGGGCCGAAGAGGCAACGGTGGACCAGTTGAGTGGTGGGCTAAGTGTCAAGTATGAGTTTTTTGTCGTCGGTGTCTTATTCTCAACAACTTGCAGATTCCGGCACCCTCGCTACCTAAATCCGCAGGTCAACGAGA # Right flank : CGTCTGCTGGGTGGATTCAAGGGGTCATCGCAACACCTCGTTGATCACACGAGTGTATGCAAACGCTCGGCTGGAGTTTTCCAGCCGAGCGTTTTGCGTGGCCGACCGTTCAGCTTCTGAGCCACGTGCTCCAGGTCCAGCGGGCCGTGCACCGACAGATCGGTGCCCTTGGGAAAGTACTGGCGCAACAGCCCGTTGGTGTTCTCGTTCGACCCGCGCTGCCAGGGCGAGGCCGGGTCGCAGAAGAACACCGGCACCCCCGTATCCACCGAGAACCTTCTGTGACCGGCCATCTCGCTGCCCTGGTCCCAGGTCAAGGACCCGCGCAGATGCTCGGGCAGCGTCTGGACCAGAGCGCTCAGAACGCCTCCCACCGCCTCGGCGGTGTGCTCGCCGGGCAGGTGCCCGAGCATCACATACCTGCTCGACCGCTCGACCAAGGTGATGATCGCGGACTTGTTATGCGCCCCCGTGATCAAATCGCCCTCCCAATGCCCTGG # Questionable array : NO Score: 5.77 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCACGCGGGGATGGACCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCGCACGCGGGGATGGACCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [50.0-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 259347-259498 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACHDO010000001.1 Nocardiopsis metallicus strain DSM 44598 Ga0415211_01, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 259347 30 100.0 31 .............................. GTCTGCTGCAGGAGGGCCGCGATGGATGATC 259408 30 96.7 31 .............................G TGCGACTGAAGGGCACCCCGATGACCATGGA 259469 30 80.0 0 .................T......TTT.AT | ========== ====== ====== ====== ============================== =============================== ================== 3 30 92.2 32 CTGCTCCCCGCGCACGCGGGGATGGACCCC # Left flank : CAAAAAGCGTGGATGCACCTGCCGTTCGAGTGCGTCCAACGCTGGTTGGGGGCTGGTCATGGGCTCTATGGTGGTCTGTCCGGTGGAGTAGTTCACCCGGCGGCCATCGGCATAGATCCTTGAGTTGCCGGACTTGCGTACCCCGCGGTCCCAGTCTTTGGCGGTGCGCTCGTTGATCCCGACCCGCCGGGCGGCCTCTCGGCGGGGCACAGCGCTCTGACGCAGGCGGTGGTACTCGTCTCGTGCTGGGTGGCGGCGCTGCTGGCGCCTGGAGCGTAGTCCGGCTTTGCGTGCCCAGGTGAACGCGGTGTTGGGGTTGATACCGAGCTTTCGGGCTACCTCGGTGACGTTCCCGGACTCGGTCATCAGCTCCAGGAACCGCTCCCGCAGCCGGGCCAGTTCTTGCTTGGAAAACGACACGGTGGTCGCAACCTCCCCAAAGTCAGGGTGTTGCGACCACCACTAGAACCCAAGCTGCAGGAGGGCCGCGATGGATGATC # Right flank : TCCCAATCTGACAGAGGGGGAATGGAGGGGCGGGCACGCTGACGCGTGCCCGCCCCGGTCTTTCGGCGCTGGTCAGGCCTGGGCGGACTGCCAGCGGTTGCGTAGGTCCGCCGCACCGGCTTCGGTGAGGGAGCCGTAGACGTTCAGGCGGGCGATGCCGCCGTCGGGGAACACGTCGGTGCGGATGTGGGTGACGGTGGCTGGGGCGTCCAGGACGAAGCGGTGGGCGCTGTCGGGCTGGAGCCTGGTGCGGCCCACCAGCTCGAACCACTCGCCGTCACCGTCGCGGCCCAGGATGGTGACCCAGCCCGCCGAGTTGCCCTTGAGGTAGGCGGTGTCCAGCTCGATGGCGCGGACGGAGGCCTGGGCGGTCAGGCGGAAGCGGACCCAGTCGTTACCGGTGTCGCGGCGGCGGCGGTTCTCCCAGCCGTCGTCCATCTTGTGCGACCGGCCCGGCTGGATGATGTTCTCCGGCGAGGAGTAGAAGCGGTCCGACGCGT # Questionable array : NO Score: 3.78 # Score Detail : 1:0, 2:3, 3:0, 4:0.61, 5:-1.5, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCACGCGGGGATGGACCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCGCACGCGGGGATGGACCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [40.0-28.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 439175-439326 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACHDO010000001.1 Nocardiopsis metallicus strain DSM 44598 Ga0415211_01, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 439175 30 100.0 31 .............................. GAGCGCATGGTCCACCACCCACTGGGTGTGG 439236 30 100.0 31 .............................. GGTCAACGAACGGGCGGAGGCGGGCGACCTT 439297 30 93.3 0 ..........................T.G. | ========== ====== ====== ====== ============================== =============================== ================== 3 30 97.8 32 CTGCTCCCCGCGCACGCGGGGATGGACCCG # Left flank : ACCGTTCGCCCCGGCCCGCCCTTCCCCCTGGAGGGCGGGCCACCGCTCTTCCTCCCCCGAGGAGTGCCCCCTGTGAACCATCCCCGCCTCGTCACCGTCTGGTGGGACCTGTCCGAGTCCGCCCAGACCATCGATTCTCTGCGGGTCTACCTGCGCGATCAGTCCGCCGACGCCTTCGCTGAGGTGCCCGGCCTACGCCTCAAGGCCTGGATCGCCGACCCCGAAACCGATCGCTGGGGCGCGGTCCTGCTCTGGGAGTCCACCGAGGCTTCCGAGGGGCCCGTACCCAGTCGAGCCGCCGAACTCATCGGCTACCCGCCCACCGAAGTCCACGCCTTCGACGTCGAGGCCACCATCCAGGGACGCTACGAGGACGAGGAACTCAACCATCGAGGCCTTGCCTTCTCCACCGAGAGGCCATGATGATGTCTGTTCTGTCCGATTTTCCAGAAGTTGGATTTCTGGCCACTGTCCACTGGTAAGTTGCCTGCTCAAGAAGT # Right flank : GGCGGGCACACGCCGTAACGCGGTCTTCGGGCATGCCGAGGTCTACGGAGACGAAGAATCCCCCGAAAACGAGCATGTGTGCTGGGCCGGTCCCGCGACAAGCAGGGCTCCGTCAGGCTGTGGACAACTCACTCGGCCCGGCAGCCGGCTGCTGAGGTTGAACGCCTGCTCCCCGCACGCGCTGTGTGGTGTTTCTGCTAGACAGGAGACTCACGGCAGAGATTTCCTCCTCGCGTTCGCGGGGAGCGGTTCCCCCAGAGGTAGGCAGAGCGTGGCAAGAGCGATCGCGGTGCTCATCGGTTCGCCCGGTTCGGGCAAGTCCACCGTCGGCGAGGCGCTGGCCCGTCGGCTCGACACGGACCTGTTGTGTACCGATACCGAGATCGAGAAGCGCGCGGGCAAGCCCATCAGCGACATCTTCATCCAGGACGGCGAAGAGCACTTCCGGGCCCTGGAGCGCGAGGTCGTCGCCGAGGGCCTTCGTGCCTGGGACGGCGTCA # Questionable array : NO Score: 5.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCACGCGGGGATGGACCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCGCACGCGGGGATGGACCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [53.3-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 4 695673-695888 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACHDO010000001.1 Nocardiopsis metallicus strain DSM 44598 Ga0415211_01, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 695673 30 96.7 31 ............................T. GACCTGGGTGTCGACTCGGGCGGGTCGGTCG 695734 30 100.0 31 .............................. TCACCCGCAAGGGCCCCAAGGGCGACATGGT 695795 30 100.0 31 .............................. CGCCGTCGGTAAGCCAGGCGTCCTCGATGAG 695856 30 90.0 0 ................TA.....A...... | CGC [695866] ========== ====== ====== ====== ============================== =============================== ================== 4 30 96.7 31 CTGCTCCCCGCGCACGCGGGGATGGACCCC # Left flank : GACGTGCTCGCGCTCGCGGACGTCGTGATCTCCCGCAGCGGCGCCGGCACCATCGCCGAGCTCACTGCCCTGGGCAAGGCCGCCGTGTTCATCCCCCTGGCCTCCTCAGCAGGCAACGAGCAGGCCCACAACGCCCGCCACCTCCAGGAGTCCGGTGCCGCGGTCGCCCTCCTGGGCGAAGTCAGCCCGGCCAACCTGCAAGCGGCGGTCGAGCCCTTGCTGTCGGACCCGGCCACTCGCGAAGCCATCGCCGCCCAGGCAAAGTCCCACGGCCGCCCTGACGCCGCCGAACGCCTGGTGGACGTCCTCCTCACTGCCGCAGGCTGACCCCAGTGGGGCCATCCTCGATAGGGATGGCCCCGCTTGCCCCCTCCAAATAGAATCGCCCTTCACGTAAGATCGCACATTTAGACTTTTTGCGAAGGAAATCACCAGTGTCCAACTCTCAGGAAGTTGGAAAAATAAACCCTTGCCACTGGTAAGACACCAGGTCAAAAAGT # Right flank : CCAAGTAGAGGTACGAACGCGAACCCGAATGGCCTGTCTCTGCTCGGGGACTCCGTACCACAGGGGTGTTGCTTTAGTTGGGTAAATGGTGAATTCGCTTTGGCCACATCAGGTCTGGTGAGAGGTCGATTCTTGGTCTGGAATGTCGGTGGGACCCATTTAGATGGGCAGCATGGACTCCGGACCCCCTCCCTGGCCCTGGAAGGACTCCCTTTCTGAGGTGGCTCGCTCTGTGTGGGCCAAGCACGACTACGACTCCGACGGCTGGCTTCCGCTCTACCGGCACATGGCTGACAGCGCATTTGTCGCGGGCAGGCTCTGGGACGAATGGCTTCCCCGGCAGGTTCGGGACGTCATCGGTGCGGCGCTACCCGATGGCAGCGCGGATACTCGGCGGCTTGCGGTCTGGCTCGCGGCCACGCATGACATCGGTAAGGCCACCCCCGCCTTCGCCTGCCAGGTCGAACACCTCGCGGACGACATGCGCGCGCACGGCCTCG # Questionable array : NO Score: 5.70 # Score Detail : 1:0, 2:3, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCACGCGGGGATGGACCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCGCACGCGGGGATGGACCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [58.3-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 5 705700-705912 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACHDO010000001.1 Nocardiopsis metallicus strain DSM 44598 Ga0415211_01, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 705700 30 100.0 31 .............................. AACGCCTGCCCGAGCACATGGCCCGCCGAGA 705761 30 100.0 31 .............................. GGCACCACCGACCCCGCAACGGGAGACGAAT 705822 30 96.7 31 .............................T TGTCCGCCCCGTGACCATCCCGGTCACCTCC 705883 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== =============================== ================== 4 30 99.2 31 CTGCTCCCCGCGCACGCGGGGATGGACCCG # Left flank : CCGGGTCGGCCTTCAGACCGACCGCGGACCCGACATCGAGTCCGGGCGGAACCTGGGGGTGATCTGGTGACCGTCATCATCCTCACGAACTGCCCGTCAGGCTTGCGCGGCCTGCTCACCAGGTGGCTGCTACAGATAGCACCGACGGTGTTCATCGGCAAGCCCTCGGCCCGGGTGCGGCAGGTGCTGTGGGACGAAGTTCAGGAGTACGCGGGCAACGGCAGGGCGCTTCTCGTGCACACGACCAACAACGAGCAGGGTTTCGCCTTCGAGACCTTCGAACACAAGTGGAGGCCGGTGGACCACGAGGGGATGACGCTTATCGAACGCCCCAAGAACCAGGAGCAGGTTGCCGCTCCCACTAAGAAGGGCTGGAGCAAGGCCTCGAAACGCCGCCGCTTCGCCAAGTGAGAGTATTTGCGAGCTGTGTTCCCAATGTCCAAGTCGCAACAACTTGCAGATTTGAAGCTCTCCACCGAATAAAGATCCAGGTCAACGAG # Right flank : GGCGAACCGTTCGACATGGCCGAGTAGGGTCGGACCGTGGCGCCTTACCGTGATCACTCACGACAGGTTTCCACGGCCCGCCCTCCGAACCCGCCGTGCGCCTTTCAACGCAACGGGCTCTCCACGGTTCCTCAACAGGTTGCAGGTCGTGTGGTCCACGGGGTGGGAATCGAATACCCCCTGAACCGATACCGGGACACCGTGACGTTGGATGCGCCACGGAAAACAGATCCCTGATAGGCGAGCCGCCACCCACGATCGGTGAACCGCCGCCTCAACTCACGCAGACCAATATTGGAGTGCTTGCGGCGGATCCAAGAAGACAACCTCCACCAGGAAAAGGAATCCACAGTGGAGAACATCTTCTTGGACACACCATGACGGAAGTAGTTCGCCCACCCCCGAACCATCGTGTCCACCTCCGCGATCTTGCGTTCGGTGGCCGTGTTCCGGGTGGGTCTGTTCGTTGCCCGCCGCACCCCGTCCTTGATCGCCTGAAC # Questionable array : NO Score: 5.82 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCACGCGGGGATGGACCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCGCACGCGGGGATGGACCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [53.3-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 6 709123-709396 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACHDO010000001.1 Nocardiopsis metallicus strain DSM 44598 Ga0415211_01, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 709123 30 100.0 31 .............................. GCCTACGACCACCTCGCCGCGCTCCGAACCG 709184 30 96.7 31 .............................A CGGACAGCCGCACCAGGTCGTCGGTGTCCTC 709245 30 100.0 31 .............................. GGGGCCAGGCTCCCGCCGAGGTCGCCGAGGA 709306 30 96.7 31 .............................G AGCTGATGGATCTGGGGTATGACCTGTCCCC 709367 30 83.3 0 .........................GGTAA | ========== ====== ====== ====== ============================== =============================== ================== 5 30 95.3 31 CTGCTCCCCGCGCACGCGGGGATGGACCCC # Left flank : GGCGATCAGCGTGCCGTCCAAGACTACGCGCGCTATCCCTTCGTTGTGGCAATTGGCCAAGACTTCGTGCAGGTCGGGGGCCTGGCCGGCGAGGACGTCGATGCCTTCGTGTAGGTAGCGGTAGCTGGTGGCCTGGGAGATTCCGGCGTCACGGGCCAGGCAGTGCACACAGCCGCGCTCACGGAACCAGCGCAGCACCAGCACCGCTTGGCGGAACGGCCCGAGTGCCCGTGAGCCCTTCGGAGTGGCGATGCTTCGGCGGTGGGCGGCCAGGTGTCGGGCGAGGAACTCGACGATGTGGCGTGGGACGTCGAGGGTGGCAGAATAGGTGACCAACGTGAAGCCTCTGGTGGTTACGGACATGATCTTGTGGTGAGACCTGTCCTACCAGGGGCTTTACGTCTGCTCGCATCCAGGTGCCACTCGTCCGGCCCGGCGGGGATCCGAAAATCACCCTGCTCCGCAGAGATCATTTCGCTGAGAAAACCTCAGTGGGCCTA # Right flank : ATCAGAGCGGGGAAAGCCCCCGCTCTGACCGGTCCTTGTTTGCTGGGTTTTAGTGGGTTGGGCAGGGGGCCAGGAGGGAGAGCAGGTGGCCGGGGTTGGTGGCCTGGGTCAGGCCCTGGGCGTCGGCGACCCAGTAGGACTGTGAGTGTTCGCCCCACCAGATGAGGAGGTGGGGGTTGAGGGCCTGCAGGGCGGCGGCGTTCAGGTGTTCCTTTGCGAATTCGGTGCGGTGGCCGCCGATGAGGGGCAGGTTGTGGGCGCGCAGGGCGCGGCAGGTGCGGTGCGCGCAGGAGTTGCAGGCCGGACCTGGTGGGTTCTGGGAAGGCCTGTGCGGGGGTCGGGGTGTGGGCGTAGGGTGATTCATTAATCCTGCTTTCTCGCTTTGCGAATGTTGGAATTCGGGATTGTTGTGGGGCCTGGGAAGCGTGCCAGCGCTTTCTCAGGCCTTTTTCCGCTGCCCCCGGGGCGGGTTCAGTTGTCGGAGGAGCCGGGGCAGTCGT # Questionable array : NO Score: 5.74 # Score Detail : 1:0, 2:3, 3:0, 4:0.76, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCACGCGGGGATGGACCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCGCACGCGGGGATGGACCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [48.3-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 7 3478573-3477994 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACHDO010000001.1 Nocardiopsis metallicus strain DSM 44598 Ga0415211_01, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================== ================== 3478572 29 69.0 32 C..AC......T..C......AA..C..C CGAGCAGCCAGCAAACCGGCCCTCAGCGACGG 3478511 29 86.2 32 C..AC......T................. TGGGTGCAGCGCGCAGTCGAGGCCGGGGTCGA 3478450 29 100.0 32 ............................. GACCTCGTTGACGTCGGCCTCGTAGACGCGCG 3478389 29 100.0 32 ............................. GAAGAGCCCGCTCAGTTCTGGCGTGTGAAGTG 3478328 29 100.0 32 ............................. CCACCAGGATTTCCGACAGCTCCACTTTCTCA 3478267 29 100.0 32 ............................. CGCAGACCCGCGCCCGGATCGTCCAGCACCTG 3478206 29 100.0 32 ............................. GCGCCGAACCGGCGACCCCCCGCACCAGAGGC 3478145 29 100.0 32 ............................. CATCAGCGCGCGTCCCAGTACCGGCAGGCCCA 3478084 29 96.6 34 ................T............ CATCAGATCCGCTCCGGGAGCGTGGCGGCCAGGT 3478021 28 75.9 0 A.T......A..........T-....GT. | ========== ====== ====== ====== ============================= ================================== ================== 10 29 92.8 32 GTCTTCCCCGCGCGAGCGGGGGTGAGCCG # Left flank : CTACGCCACCGGCTCACCCCCGCTCGCGCGGGGAAGACGCGTCCGAGATCAGCCGGTAGTCGATGAGCATCGGCTCACCCCCGCTCGCGCGGGGAAGACACCGCCAGGAACTACCTTCTCACCCTGCGCCACGGCTCACCCCCGCTCGCGCGGGGAAGACACCTCGGCGCCCCGGGAGAGGCCCGTGGGCACCGGCTCACCCCCGCTCGCGCGGGGAAGACGGAGCGATGAGCGACAGCACCCGCCCCGTCCGCGGCTCACCCCCGCTCGCGCGGGGAAGACAAAATGGACGGCTACCGAAACGAGATCGATTCCGGCTCACCCCCGCTCGCGCGGGGAAGACTTCTTGGGCTGGTCGGTCGTCATGAGTGGCGACGGCTCACCCCCGCTCGCGCGGGGAAGACGCTAGCCGCAGCCCCAGAGGGGCCGCTTTTCCCGGCTCACCCCCGCTCGCGCGGGGAAGACTGTTTGAGCAGGTCCCACCACGTACCGGACACCGG # Right flank : GCGGTAGGACTCGTCTGCGGAGCTGTAGACGGGAGTCAAACGCTGGGGGCGAGGGCTCGGAGAATGGCGTTGCTGAGAACGCGGCGGTCACTGTTTGGGCGCAAGTTCTGGACCTGTTCGCCGCGCAGGGCTTTCGCGAGGTCTGCGCGCTGTTCGGGTTCGAGCTCGTCGAGCATCTGCTCGGCCAGAACCATGGCATGGTAGTGCTCGAAGGCACTACGTGGCTTGGTGAGTACGGTCAGGACGGCGCTGAAATCGCGCAGGGACGTGTCGGCCTGCATCAACCCGAGGGCGGTGATGCGCTCTTCGTCGTTGCCGTTGCTCAGCCACTTGCGAACTTCTTCTGGAGCGAAGGCCTGGGTCCTGGCCAGTTGTCGGCCCCGTGACATGATCCTCTCCAAGGCCCGAACACGGGCAGGACCTGAAGGCATGGTGGCTCGTGTCGAGCGGTAGTCCGTGAGCAGCGGACCTGCTGCGTCGAGGAGGGCGTGGGCCTCGTC # Questionable array : NO Score: 5.90 # Score Detail : 1:0, 2:3, 3:0, 4:0.64, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCGCGCGAGCGGGGGTGAGCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCTTCCCCGCGCGAGCGGGGGTGGTCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.20,-13.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [8-13] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [31.7-31.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,4.87 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 8 5056059-5056526 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACHDO010000001.1 Nocardiopsis metallicus strain DSM 44598 Ga0415211_01, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =================================== ================== 5056059 37 100.0 35 ..................................... GTCCACGGTGACCGCGTCGTTGACGCGCATCCGCC 5056131 37 100.0 35 ..................................... CAGGACCTCTACGGCTGGGCGGGGCATCTACGCTG 5056203 37 100.0 35 ..................................... CCTCCTGCCTGGTGGCGCGGCGCGCGGGGTTCCGG 5056275 37 100.0 35 ..................................... CGCCTCGGTCGGCGGTACCGGGGCGGGTGCGGCGG 5056347 37 100.0 34 ..................................... TACCGTGTACACGGTAGAAAGCCCGGAGGGTCCC 5056418 37 100.0 35 ..................................... CAGTTCCCGGACGCGCGCCACCAGTGCGGGCACGT 5056490 37 89.2 0 .........A......................T.GG. | ========== ====== ====== ====== ===================================== =================================== ================== 7 37 98.5 35 GTGGCGGTCGCCCTCCGGGGCGACCGAGGATCGCAAC # Left flank : GAGCCTCGGAGACCGAAGAGGCGAATCCGAGCTCAGCGTTGACGATCGAGAAGCTGTGAGCACCACCGTGTCAAGGTAGGCCAGGTGTACCAGCGAAGACGGGCCGACGCGGGGTCTGCGGAGCGGTTTGAGCTTTCTCTGTGGCGAGGTGCGTACGCTACGCGCATGGTGCGTCTTTACAGTTCTTTCCTCTGTCTTGGATCTGAGGGAGGATGCAACCACCAAGGTTCTCGAGTGCAGTTGTCGCTGCGAGCCTTGCATCTGAAAAGTCTGTGTCCTCTGCTAGTGCTTTGCTTGGCAGGCAGGGGTCGGCAACGGTCCTGTGCAACAGACTCGATTGAAGCTTGTCCGCTTGGTTGGGAACCGGAAGTGGTCAGAGAAACCCGGGGCGGTACCGAACGGACTATGGGGGTCTCCCTCCCGAATGTCCGGATTGCTGCTCTGTGTTTGTTGATATGGAGAGGTCGTTTTCCCACTTCGCGGGCCGTGGCGGTCACCCT # Right flank : CACCACCGCCTACCAGATGACTGTGGTGCCCAGGCGGACCTGGTGCGGATGGCGGTGGAGACCTTAGTCCCAGCGGTGGGGGCGGCGTCGACCGGCTGAACGCCGTAGCGCCCGTCGACGATAGGCTGGGATCGCTGCTCCCAGGAGGGCCGACGGCATACGGCGCGGCACCTGACCACACTGAACGCCGGTGCGTCAGATTGTTGTTACGAGGGGTGAACGGTGATATCGGATCAACCAGAACTCGCGCTCGACCGCATCGAGTGCGCCGCTCGCACCCTGGGTGCGGGTGGTCTGGTCGCGTTCCCCACCGAGACCGTGTACGGGCTCGGCGCCGATGCCGAGAACGTCGGCGCTGTGGAGCGTGTCTTCGCGGTGAAGGGGCGGCCCACGACGCATCCGCTGATCGTGCACCTGGGCGGCGCGCATCAGCTCGCCGAGTGGGCGGCCGACGTGCCCGACACGGCGCACCTCATCGCCGAACGCTTCTGGCCGGGTCC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGCGGTCGCCCTCCGGGGCGACCGAGGATCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGCGGTCGCCCTCCGGGGCGACCGAGGATCGCAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-19.00,-16.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [43.3-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 9 6487532-6487320 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACHDO010000001.1 Nocardiopsis metallicus strain DSM 44598 Ga0415211_01, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 6487531 29 100.0 32 ............................. CACCCAGGTATCTGCGATCCCTGGTGTTCGGC 6487470 29 100.0 32 ............................. GACTGCCACACGTAGCGAACCCCGCTGGCAAC 6487409 29 100.0 32 ............................. CCGGGCCGAGTCGTCATCCGGGGCGTCCTTAC 6487348 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 4 29 100.0 32 GTCGGGTCCACGCGCACAGGGAACGACCG # Left flank : TGCCTGGCAAGAACGTGAGCTCCAAGGCCGGGCTGAACCGGTCGATCCTGGACGCGGCCCCGGCCGAGCTGCGGCGCCAGTTGGAATACAAGACTTCCTGGTACGGGTCCCACATCGCGATTCTCGATCGCTGGTTCCCCTCCAGCAAAACCTGCTCGGGATGCGGATGGCGAAACCCAAGCCTTCCCTTGTCCGAGCGGGAGTTCGTCTGTGCCGAGTGCGGGTTGCGGTTGGACCGCGATCTGAACGCGGCCCGTAACATCGCCGCTCACGCGGAAGTGCCAGCTTCTGGCACCGGTGCCCCTGGTAGAGGGGAATCCGTGAACGCCCGTGGAGGGTGTGTAAGTCCCCGGCTCCTTCGGGAGTCTGGGCAGCACCCATCGAAACGGGAAGACGCTGCGCCCTCTGGGCCAGCGCCACCTCGGCGGAGCAACCCGCCGACGTTCCCATAACCCACATATCGGGAAAATAACGGCCCGTGTTGTCGCAGGTCATTTCCT # Right flank : GACATCCTCGACCAGGCCCCGGACGCCTACGTGGAGATCAGCGCGTACGGGACGGGCCGGTACATCGCCCTGACTGTCCGCCCGTACCGCAACGCCCCGAACCTACTCGGGGACCTCACAGACCTGACAGGAGACCTGAGTCAGCTACCCTCATCCTCGGACAGTCGGTAGCCGAACTGGAAACGCTCTGGGACGTCTTCGGTAGACCACTCAGCGATGGGGTGCAGAGACCAGCGCGTGAGCGCGTATTCCAGCTTGAGTGTCAGGTCGCGTATTTCTTCGATCTGCTCAGGCTTGAAGTGGCCTCGCGCAGAAGCTGGCTGGATGGATTTTCGGATCGTGATGAATCGATCGCGGAGTGTCTGCCAGCTGTTGGTGAACCACTGCTGAAGTTCGTCGCTGGTTCCTTCATCGTTCAGTAGAACCTGGACCATCAGCACCCTGCTTGCCAGGAAACGGTAGGCGCCAAGCTGCTCATACGCGACTGCCCTCCCCGTCAC # Questionable array : NO Score: 2.86 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGGTCCACGCGCACAGGGAACGACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.60,-0.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [28.3-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.64 Confidence: LOW] # Array family : NA // Array 10 6885166-6885377 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACHDO010000001.1 Nocardiopsis metallicus strain DSM 44598 Ga0415211_01, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 6885166 29 100.0 32 ............................. CGTCCCGGTCGGGTGGGACGCCACCACCGACG 6885227 29 100.0 32 ............................. GCGTAGAAGTGGTGCATCAGGATCTCCGTTCG 6885288 29 100.0 32 ............................. AGCACCGTGGCGGCGGTGCGCTCCAGGGCCGC 6885349 29 82.8 0 .................A...GCA.C... | ========== ====== ====== ====== ============================= ================================ ================== 4 29 95.7 32 CTGCTCCCCGCGCACGCGGGGATGGTCCC # Left flank : CGCGACCGGAAACCATCCGTTTCCGGCAAGGATCGGTAAGCCTGTGCCAAGGGTTGTCATGTGGGGCGATGCGGACGGCGTGGCGTGCGTTCCCAGCACCCGCCTAGGGTGAGTATGGGCAACGGGCCGCGGGGGAGTTTTCGCAGGTGACCTAACTCCTCCCGCGGGCCGACCCTCCTTACCCGAATCCACCGCGTGGCCGCCCACTGGCCCAAGGTTCCAGGCCGCGCGGTGTTTGCCCCGAACGGCGCCCGTACTCCCGGTACGGGCGCCCTTCGCGCTCACTCGCCAGGTTTCACGCTGATCCGGTAGCCCCGCGTACGCGCCAGGGTTGAGGGATGGTGTTCTTCGGTGCCTTCTTTTTCCTAGCGGGAGAGCAGTAGGTTGGTGTGCATGGTTGCTGGAGGGTGGGCTTTTTGAGTGATTTGTCTTCGGTGTCCAAGTGCCAACAACTTGCAGATTTTGGCCTCTTGACGCTCTAAATTCGCAGGTCACCGAGT # Right flank : CGGTTTTGCGAGCTGATGGAGCTTTTCGGATCGGCCCCTGCTAAGTTCTTTTTGACCATTTCGATGGGGTTTGAGGAAGCCGGTGTGACTCCGGCGCGGTACCGCCACTGTGAACAGCGCCCAGCAGGCGCTGTGAGCCAGATACTCGCCCCATTCGTACCTTTCGAACACGGGGCGGCATACCCCCAGAAAGGCCCGGCGGAGCCGTGCATTCCTTTTCTGTCCTCTCTTCCCAACCCAGGCCGACCGGTCCGCTGATGACGGCGTCCGTCCTGGCCACCACCGCCGTCCTCCTCGCCGGCTGTACGGCCGGGGCAGGCCCCGAGACGGCCGCAGAGGACGACACCACCACCGTCGAGAACTGCGGGATCGACGTCACCGTCGAAGGGCCGCCCGAGCGGGTGTACGCCGCCTACCAGCCCGCGATCGAGATCGCCCACGCACTCGGTATCGGCGACCGCCTGGTGGAGACCGCGTTCCTCGACTCCCAGGTGCTGCCG # Questionable array : NO Score: 5.65 # Score Detail : 1:0, 2:3, 3:0, 4:0.79, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCACGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCGCACGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [51.7-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 11 6891125-6891467 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACHDO010000001.1 Nocardiopsis metallicus strain DSM 44598 Ga0415211_01, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 6891125 30 96.7 31 .............................C CATCCAACGGGGGTTGGCCCTGAGCGATGGC 6891186 30 96.7 31 .............................T ACCAGCACCAGGCGGTGTTCGAGTACGCCTA 6891247 30 93.3 31 ..........................T..T CCGCATCCGCAGACAGCCCATGCTCCTCACG 6891308 30 100.0 31 .............................. GTGGCCACGGCCAACCAGGCGGTGGCCCCGC 6891369 30 100.0 39 .............................. GCCTGCCCCACCCCCTGTGGCTGCTCCCGTTGGGGATGG 6891438 30 90.0 0 ..............T........A.G.... | ========== ====== ====== ====== ============================== ======================================= ================== 6 30 96.1 33 CTGCTCCCCGCGCACGCGGGGATGGACCCG # Left flank : GCCGAAGTCCGACACTGCTGGTTGCTCCCTGGTCTGCCAGTTGTGCCAGGTCTGGTCGGCCTCGTCGGCCAGGTGTCGTTCTCCGGCTTGTTCGACGCGGCCGTCGGCATGCACGCGTGCCCAGGAGGGGCAGGTGGTGGAGGCGATTCACACGTGCGGTTCGGTGGCGCTGGGTTCCATCCGGAAGCCGAAGGACCAGTCGGGCATGAGCAGGGAGAGCAGTAGGGCGGCCTTTGCGTCGAGCCATTTCTGGCGGGGGGCTTCGGGCGCTTCTCGGGTGGACTCGGGTGCGGCGCCCGGCACGGGCGCCGTTCGCGCTCCCTCGCCAGGTCTGAGGAATGGTGTTCTTCGATGCCTTCTTTTCCCTGACTGGAGAGCAGTAGGTTGGTGTGGATGGTTGCTGGAGGGTGGGCTTTTTGAGTGATTTGTCTTCGGTGTCCAAGTGCCAACAACTTGCAGATTTGGGCCCCTTGGCGCTCTAAATCCGCAGGTCACCGAGT # Right flank : GGCGTGATGTACGCCAGGCCCCCTTCTTGAACGCTGTGCTGTGGCTGTGGTGGTCAGAGCGGCGGGAGCCCGGACTGGAAGACGGCCTGGCCGAGGACTTGGGTGGTGCCCTGGGCCAAGAGCAAGGTCGTGCTGATGGCCACAGCGGGCCAGCCCCACCAAGAGCGCGGCGCCCGGTGACGACCCCGGGCAGGCGTCGCGGGGGCGTCGTTCAAGGCCGCGAAAGCCTCTTCCAGCCGCTGGGCTTCGCGCTCGGCCTGTTCGCGGCGTTGGCGGTCGACCTCGAACCAGTGCGGGGTGGGGCCATGTTTGAGCATGTGGGCCACTCGGGGGTTACCTTCCATCTGGCGGAGTAGCCGTGCCTGGCGTTCGGAGTGGGTTTCCGGTGTGCTGAAGTACGGGCCGGAGTGGCGGTGTTCCCGGGGTTCGGGTGGGGCGGCCAGGGGACGGTTGGTGCCGGGTCGGGAGAAGCGGTTGCCCCGGGGTGCGGATAGCCGCTG # Questionable array : NO Score: 5.75 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCACGCGGGGATGGACCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCGCACGCGGGGATGGACCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //