Array 1 483311-485413 **** Predicted by CRISPRDetect 2.4 *** >NZ_VUJA01000002.1 Salmonella enterica subsp. enterica serovar Kentucky strain 158957 contig02, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 483311 29 100.0 32 ............................. AGAAAGATGCGTACGTTCAATGTCGAGCTTTT 483372 29 100.0 32 ............................. ACTGGCTAATCACGGTTAACGCCGTGCCGGTG 483433 29 100.0 32 ............................. CGGCCGGACTGATTTAACGAGGGGAATTTATG 483494 29 100.0 33 ............................. TTTTATCGTCGTAGCCTATTGCTAACTTGACGC 483556 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 483617 29 100.0 32 ............................. TAATCTTTCAGCGCGTCCTGGCGGTCAACGAG 483678 29 100.0 32 ............................. TTGAGTGCCACGGCCAGAGCGGTAGCCATTAA 483739 29 100.0 32 ............................. AAAACGGGTTTGCGGAAGGCTGGAACGCCTGC 483800 29 100.0 32 ............................. GAGCGGATCCGGGATCGTCAGCACTCTGAACC 483861 29 100.0 32 ............................. CACGATTTTATGTGCCGCGTCGAGGCGTGGGC 483922 29 100.0 32 ............................. GCGACCAAACCATTCGGATTCCGTAGGGGACC 483983 29 100.0 32 ............................. ATTTCTTGCCTATAATTTCCGGTTCGACGCCA 484044 29 100.0 32 ............................. CACAGATCGCGAGTTTGCTGGGTATATCTGAA 484105 29 100.0 32 ............................. GGGAATGGCTGGATCTGGTGTTGGTTATTTGC 484166 29 100.0 32 ............................. CCGCCGCTGTTCTTCTGTGTCTGCTTTTGTCC 484227 29 96.6 32 ...C......................... GCAGTAATCCCGGGTATTCCGAGTTATATGAA 484288 29 100.0 32 ............................. GCGTCAACCAGTTCTGGCATACCCTCCTCTTC 484349 29 100.0 32 ............................. ATTAGCTGATAAATCATCCAACATGTCACTTA 484410 29 100.0 32 ............................. AGTCGCTGGCGGATGTGCGGCGCACCGAAGCC 484471 29 96.6 32 ..G.......................... CACATAACCCGGCGCGATGGCCGATACATCAT 484532 29 96.6 32 ..G.......................... CGAGAGATCATAGACCAATGGACTGAAAGACT 484593 29 96.6 32 ..G.......................... TTGCGCTGTTCTATTGGCGGCAATTCTCTGAA 484654 29 96.6 32 ..G.......................... AGTACGAGGCACTATTCGGCAAGAAACCGCAC 484715 29 96.6 32 ..G.......................... GGGGCATGTGCGAAATTTCGCTCCAGTTTGTT 484776 29 93.1 32 ..G.....................C.... GCTCAAAACTCGGATGGTATAGGCGTGGCGCA 484837 29 96.6 32 ..G.......................... GCAAGCCACAGCGCAAAAGAGGTCTATTCCTG 484898 29 96.6 32 ..G.......................... GCGCTTCCGCCAACTCTCATCCGTGAAACGGT 484959 29 96.6 32 ..G.......................... CGCCATAAACGCGACTCCGTCACACATCCGTA 485020 29 96.6 32 ..G.......................... ACGCGTTAAAACTGCGCTCAATGCAGACGGCC 485081 29 93.1 32 ..G........A................. CGGTTCGCCCGCTGCTCAGTCTCGCCGGAATG 485142 29 96.6 32 ..G.......................... GGGCATGAGTGCTACTGCTTTCAACCCGAAAG 485203 29 96.6 32 ..G.......................... ATAAATTATCGGGAAATCATAATCAGCGCCGC 485264 29 96.6 32 ..G.......................... AAAACCCTCAAATATGCGTAACGGGAGGCTGG 485325 29 96.6 32 ..G.......................... TGCGCCAACGACTGGAATTTTTGCGTGTAGCC 485386 28 79.3 0 ..G............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 35 29 97.7 32 GTATTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGACATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGAGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 5.93 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.78, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 503046-505027 **** Predicted by CRISPRDetect 2.4 *** >NZ_VUJA01000002.1 Salmonella enterica subsp. enterica serovar Kentucky strain 158957 contig02, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 503046 29 100.0 32 ............................. TTTTTTATAAATCTGGCGAACCTGCACCCCCT 503107 29 100.0 32 ............................. CTCTCAGCCCCTCCGGGGCGCCCCGTGATAAT 503168 29 100.0 32 ............................. CATCCCCCCTCTTTTCCCCGGGTGTTTGTTGG 503229 29 100.0 32 ............................. ACGGTAGGAATATTCACGTTTTTTAAATCGGA 503290 29 100.0 32 ............................. ACGTGACCGCCGAAATGATTGCGGAAATCGCC 503351 29 100.0 32 ............................. CGCGCCCACCGTTCAGCCCTGGAAAAAGCGGC 503412 29 100.0 32 ............................. CCGCCTTCACCCAGCCCGCCGGACATCTGATC 503473 29 100.0 32 ............................. AGGGCTGGCTGACGCGCACCGAGCGCCGCAAC 503534 29 100.0 32 ............................. AAATTTATGAGGAAAATTATGTCAGACAGTAA 503595 29 100.0 32 ............................. AGGAGTTGTTAGGCCAACTGTATAACGATTTA 503656 29 100.0 32 ............................. AGATGACCATCCCACCAAGCAGGCGAAGAAAA 503717 29 100.0 32 ............................. GTGCCGCTGATTTTCGTAACGCCTCAATGTAT 503778 29 100.0 32 ............................. AAAAAACAATGGTTTTACCGTCCGGCTGAACA 503839 29 100.0 32 ............................. CCGATGATCCAGAAAGTCACAAATGCGAGGAG 503900 29 100.0 32 ............................. AGGGGTTCAGGGGCGAGCGGGCGTTAAAGCGC 503961 29 100.0 32 ............................. CAGACCAGGGAGTTTCTGGCCGAACTGGAGAG 504022 29 100.0 32 ............................. ATGTGCGCATTATTGCTAACCATAGAGACTCA 504083 29 100.0 32 ............................. GGCGACGGCACAAAACGCTCAAAACTCATAAC 504144 29 100.0 32 ............................. TGTTGGCTGGTAACCACCGCAGATCGTCACCT 504205 29 100.0 32 ............................. ACCAGGGGGTTTTTTCCACGTATCGCCGCTGC 504266 29 100.0 32 ............................. AACAGTGGTTTTAGGTTGTCGGTGCTGATCCC 504327 29 100.0 32 ............................. CCCTTTATCTTAGCCGCCAGAACCAGAACGCC 504388 29 100.0 32 ............................. GCCCCGATAGCGTCAACTACCAGGGCCTGCAA 504449 29 100.0 32 ............................. AATTCTTTTGCTTGCGCGTCGTTCATATCGAA 504510 29 100.0 32 ............................. GACAATCAGGGGGCGCTGGTTGACAGTATTAA 504571 29 100.0 32 ............................. TTAGTCAGGACGACTTTTACGGCTATGTAGGC 504632 29 100.0 32 ............................. CTATGAGCAACGATATCACCGCACTGGCGCAG 504693 29 100.0 32 ............................. CCGTAATGCTTTTATGTCCTCGCTTCGCTGCG 504754 29 96.6 32 ...................A......... GAGGTAAAACTAACTGGCCGCGTTGTCCGTCA 504815 29 100.0 32 ............................. TACGCCAGAGGAATGGCTTTCAGTGTTTTGGT 504876 29 100.0 32 ............................. ATATTTTGGCAACTCGTCGTACATTATCGCCA 504937 29 100.0 32 ............................. TGATATTTTTGGTTATTTGCGATTTAGTTTTT 504998 29 100.0 0 ............................. | A [505025] ========== ====== ====== ====== ============================= ================================ ================== 33 29 99.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTATAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCTCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCAGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //