Array 1 280983-282467 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP018307.1 Aulosira laxa NIES-50 DNA, nearly complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================= ================== 280983 37 100.0 40 ..................................... GCTCTTGGCGTGATACCCAATTGAGTGGCCACATAAGAAA 281060 37 100.0 36 ..................................... ATTACATAATCATTATTTATAGGAATGTCAATTAAG 281133 37 100.0 34 ..................................... TTGTCGGCACTGAAAGCACTTCAAGAAGAGGATA 281204 37 100.0 41 ..................................... AATGCAATCTAGTATATTTTCTTTTGGACAAACAGAAAGAT 281282 37 100.0 36 ..................................... CATCCACTAGAGAAGAATACTACAAAGAAAATTTAA 281355 37 100.0 34 ..................................... AAATACAAGTATTTCAACTATTCCCTTGAGTTTC 281426 37 100.0 35 ..................................... ATCTGACAGCGACCCTGCGGTAGTTGCAGAGATTG 281498 37 100.0 35 ..................................... ATCAGCCTCCTTATTTTGCAAATAAGATGCAATCT 281570 37 100.0 36 ..................................... GAAATACTTAAGCTACTACTTCGATTCCTTTAAATG 281643 37 100.0 33 ..................................... AATGGATCTACACCGGAAACACACCAAGCTGGG 281713 37 100.0 34 ..................................... TCAGGCTTAGACTCTGCATACTTAATAAACAATA 281784 37 100.0 34 ..................................... AAAAATAGAAACTTGCCCAAAAATTGCAATAGAA 281855 37 100.0 36 ..................................... CTACTACCGCTATTAGTTGGAGTAACCTGACATTGG 281928 37 100.0 36 ..................................... ATTTCAGGATAGTAAGTTGATTCGTGGCTTGAATAT 282001 37 100.0 33 ..................................... TTTAGGTTTATCCGGGTGTCCGTAAAAAATAGA 282071 37 100.0 36 ..................................... AAAGTCTAGATTTGGCTGAAATAATACCAAGTTTTC 282144 37 100.0 35 ..................................... AAAATCAAACCAGCCGCAGCTGTATCAATGCCAAT 282216 37 100.0 34 ..................................... ACGTTACTCAAACCCTGTGCAACATTAGCAGCCG 282287 37 100.0 34 ..................................... GGCTTCCCAGATTTTCTACCTTTTCTGATTTGTA 282358 37 100.0 36 ..................................... ATCAAGGCTGCATGGGATGAGTGGGTGCAAGGAAAG 282431 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ========================================= ================== 21 37 100.0 35 GTTTAAACTTCACTTAATCCCTATTAGGGATTGAAAC # Left flank : ACCAACGTGATCGGGTTGTCTATCAACGAGCGCTCATCCATAGAGAACATCGGTTCCTTCATAACCAACGTGATCGGGTTGTCTATCAATGAGCGCTCCTTCACGCACAACCAGATCTCCTTCACGCACAACCAGCTCTCCTTCACAACCAACGAGCCAATTTTTCGATTAACTAGCTCTCAATAATTGATGTTTTAGCCTTCCCTAATGCATTGCCTGTGCTGCTATGATTGAATATCAGCCGCCCGCAACCATACTCTTTTCTTGCCAGAATGCGCGGATGGGTAGGTGTTAAAAAAGTAATCTCACCAAAAACCGTTAAAACTATTTGTATATAAGGCTTCTACTGATTTATTGCTGTCCAATCACCCGCGCACCTTACAGAGATTGACTTTCAGCCATTTTGGGTTTGCTGTTTCATTATTGCTTATGTTATGATTGCACTGTCCGCGCAACCGAACCTTGAAAACTATATATACATTGGCTTTGGGGCTTCCGCT # Right flank : CGATATTAAAAAACTAGATGTTTACTGCAATAGACTAGTATGAACTACCCACAGTTGGCTCCGCCTGAACTGTGGGTAGTTCATTTGTTAGAGATTCTAATACACTAAGGGAGTTACGCCGCGCATTTGACGTAAGGAATTGATGCAAGCTGGACAATCGCAACCAAATAATGCGATCGCAGTATCGCTTTCTTGATCATTAAACTCTAACATCGGTACACCATCTGTAGAAGGCTGTGCTTCTTGCTGATACTCTGGTATTTGAGCCAATACAGAAACTCTCATACAGACTAAACCAACTTTGTGCTTATTGCGGATACAAGATAGACGGTCAGTATTTGCTGGTACTGGATCTGCTGCTTGAGCTTGATTGATTGTCACTCCCATAGACAAGATAGAGCTTATCAGTACAGGAGTCGAAAGCAAGTGAAGTAAAAATTTGTTCATGAGTTTCCAGGTGAAGAATTTCGACTGCTCACATGAGCCGATTTCATCTTACA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTAAACTTCACTTAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.20,-7.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [50.0-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.64 Confidence: HIGH] # Array family : NA // Array 2 1954834-1954579 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP018307.1 Aulosira laxa NIES-50 DNA, nearly complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ==================================== ================== 1954833 37 100.0 35 ..................................... ATAGCTACAGTATTTATTTTCATACAAATAAGCCC 1954761 37 97.3 36 ......................A.............. GTCGTACTTGGATTTAAGCCAAACGTTCGTGGGACG 1954688 37 100.0 36 ..................................... TGGCTTTCGCTGCTGGATATAACAACTACTTGACTC 1954615 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ==================================== ================== 4 37 99.3 36 CTTTCAACCCACCACCAGCCGTGAGGGTTATTGAAAC # Left flank : GTATCTTAGTTAAGCTCTGGAAGTAGAAATTCTCATTTACCAATCTTGACAAAGATAATATTATTCAGCGATAATTAGAAACGCGTATTCCGGGGTTATAGCTCAGTTGGTAGAGCACTTCAATGGCATTGAAGGGGCCAGCGGTTCGAATCCGCTTAACTCCATATGTACATTAAATTATTATTGTCAGTTTTAAAGAATTCTTGTCCATTTTGACGTAGTTAAGGGACATAAGTAACCTATTTTCTTGACTTTCAGCACTCAAACCAGTTTTAAATAATTATTGTCCAGAGTTGAAACCAGTTTTAAATAATTATTGTCCAAAATTAAGTTAAGTTTCTCGCAAGATACATTGACTCTAAATGTATCTAGAGATCTATGGGATCAACTGCACAGGTTTTGGCAATATGCCATTGAAGTGCTCCTTTCAAACCACCCTAATAAATAATTTTACAATAGAAGACATAATAGTGAAATTGCTGAAAACATAGCGATAAAAT # Right flank : CCCGCACTTGTCAAACTCTTATCCTGACTATTTTCCAGAAGCGATTTTGGCAAGTCTACTTAAAAGCCTATTTTCTATCACTAACAAATAAACTTGCATTCGCATTGAAATGAATGAAATGCAGTCAAGACAATAGTTTTAGCCATTTGGCAGCACTCCAGGGATTTTGCCCCTGCTTTGACTTGCCAAAAATAAAAATTAGGGGGTGGTAGTTCGGTAGCCACCATGACGGTATACCCGTACCCTTACTTTGCTGTAAAGTAAGAGGTAATGATGTACTCATACAACCAAAATCCCAGATTTCAGTCATATAGTCCGCTCTGTCACCTAACACCAAGCAAAAAGAGTTTGATGTCAAGAGCTAAGGTTCTGGGCTGTTTGTCACCCTAACACCTTATACTTCCCATGCGTCTCGGTGCGAGTCCTTTCTCATCTAACAGCAGCATTTGCTTACCCAAGCAATTACTGCTAACAAACGCTTAGATGAACGCACAGGTTGA # Questionable array : NO Score: 5.82 # Score Detail : 1:0, 2:0, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTCAACCCACCACCAGCCGTGAGGGTTATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [8,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-10.50,-7.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,5.14 Confidence: HIGH] # Array family : NA // Array 3 2026713-2026030 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP018307.1 Aulosira laxa NIES-50 DNA, nearly complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ==================================== ================== 2026712 37 100.0 34 ..................................... TCTCAAACTTCTTTAGATGGTGCTTTTAAAGAGT 2026641 37 100.0 34 ..................................... GAGCTTGTCTAGCCTTTCATCCCAAATCCCTTCA 2026570 37 100.0 35 ..................................... CTAGGACTAATGCGCCAGAAAACGCACCAGATGAG 2026498 37 100.0 34 ..................................... CCGCAACTATTGCTAAGTCACGAGTCTACTAAAA 2026427 37 100.0 34 ..................................... TTAATGTGCAATGCGGTAATTGCTCATCTGGTAG 2026356 37 100.0 36 ..................................... ATTAAGATAACGATTTCCTGCACAGAGCTATTTTGT 2026283 37 100.0 36 ..................................... AAGGAATTCAGACAGCAGGTATTGAGTTTGCTCAAT 2026210 37 100.0 34 ..................................... TAAGGGTTGCTCGTGTCCACTGTGGACACGAAGG 2026139 37 100.0 36 ..................................... GCGCCGCTTTTAGTGCGTCGCACTGCGCCATCTAAA 2026066 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ==================================== ================== 10 37 100.0 35 GTTTAAACTTCACTTAATCCCTATTAGGGATTGAAAC # Left flank : ACCAACCTGATCGGGTTGTCTATCAATGAGCGCTCATCCATAGAGAACATCGGTTCCTTCACAACCAACCAGATCGGGTTCTCTATCAATGAGATCTCCTTCACGCACAACCAGATCTCCTTCACGCACAACCAGATCTCCTTCACAACCAACGAGCCAATTTTTCGATTAACTAGCTCTCAATAATTGATGTTTTAGCCTTCCCTAATGCATTGCCTGTGCTGCTAAGATTGAATATCAGCCGCCCGCAACCATACTCTTTTCTTGCCAGAATGCGCGGATGGGTAGGTGTTAGAAAAGTAATCTCACCAAAAACCGTTAAAACTATTTGTATATAAGGCTTCCACCGCTTTATTGCTTCTTAATCACCCGCGCGCCTTACAGGGATTGACTTTCAGCCATTTTGGGTTTGCTGTTTCATTCTTGCTTATGTTATGATTGCACTGTCCGCGCAACCGAACCTTGAAAACTATATATACATTGGCTTTGGGGCTTCCGCA # Right flank : AGCTAACACGCGATTCTCATTAACTGCTTTCTCAAGTTGAAATTTCACCTAATACCAATTTAAATAATGTTGGCGACAAATAAAGTCTTTGTAGGGGCACGGCATCCACAATCTTTTGGTAGATCAAATTATGTTACTGGTGCCGTGCCCCCACCAAGTATTAGAAATTGAAACTGATATTTAATTTCTCTGCACATTCCCTAGGCTGGTTGAAATTTCACCTAATACCAATTTAAATAATATTTGCGACAAATAAAGTCTTTGTAGGGGCACGGCATCCACAATCTTTTGGTAGATCAAATTATGTTACTGGTGCCGTGCCCCCACCAAGTATTAGAAATTGAAACTGATATTTAATTTCTCTGCACATTCCCTAGGCTGGTTGAAATTTCACCTAATACCAATTTAAATAATGTTGGCGACAAATAAAGTCTTTGTAAGGGCACGGCATCCACAGTCTTTTGGTATATCAAATTATCTGACTGGTGCCCATTGGTGTC # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTAAACTTCACTTAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.50,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [65.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,4.5 Confidence: HIGH] # Array family : NA // Array 4 2284029-2284646 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP018307.1 Aulosira laxa NIES-50 DNA, nearly complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================== ================== 2284029 36 100.0 42 .................................... ACCTGTAATAGCACCTTGATGTCGGCTACCAGCCTTGTAATC 2284107 36 100.0 35 .................................... AACTTCATGCTGCTTGCAAATCTTGAAAAAACCAA 2284178 36 100.0 36 .................................... TCTGAGCCATAGTACCTTTGAGAGCATCTTTGTCAT 2284250 36 100.0 39 .................................... ACTCAGGTCAGGCACACTGCCACTGTGTCCATGAATTGC 2284325 36 97.2 35 .....T.............................. TGTTAGCCTGGCTGTTTTCATCTACATTGATGCGT 2284396 36 91.7 37 ...G..G........................A.... ACTGTGGCGCAGCTCATCTGGAAGAAGCCATTGCTGT 2284469 36 88.9 34 ......G....A..A....T................ ACACAAGTGTTGGGAGCGATAGACGCAGCACCGA 2284539 36 83.3 35 ...G..G...G.A......T..G............. CGACGAATTGCCCAGCGCAGTTGAATTTCTATTTG 2284610 36 77.8 0 ......G...G.A..A.....C........AA...T | G [2284614] ========== ====== ====== ====== ==================================== ========================================== ================== 9 36 93.2 37 CTTTACAATCACCTCGCCCCGAAAGGGGATGGAAAC # Left flank : TTTAGTAAGCAAAAGTAGATATTGCTTTCTTCAAAGCTGCTTTTGCTTTCTCATTTAATTGTATTTAGTAAGCAAAAGTAGATATTGCTTTCTTCAAAGCTGCTTTTGCTTTCTCATTTCAGTATATTTAGCAAGCAAAAGCAACTATTGCTTTCTCAAAAGCAGCTTTTACTTTCTCATTTCAGTGTATTTAGCAAGCAAAAGCAACTATTGCTCAAAATCCACCAGTTAGATTTATGTAAAAATTAAGTAACAAATCTGACTAAAAATCGGCAAAAGTTGTATTTTAAGGATAGTTTGTGTCCTTCATCGACACCAATCACCAGCACCTTGAAAACCGCATAATTTCTTTGACTTCTGTCGATTGCCTACGCAGCAAAGCTTTCAGGTTTTGACAGCTTGGGTTTACTGAGAATTCTTTGGAGCTATTGACACTCAAAAAAGTGGTGTCGATTGAGGGGTTTCAAACCCTCTCCTGGTAAGGTTTCCAAAAGTGAACT # Right flank : TCTATTAGTAGTAGCTGTAGTCAGGGGAAAAGCATTCGCTAGGCGATCGCATCACCACGGCAACGGGATAAAAAAAGTGAAGATAAGCAGTGCGATCGCACCTACTCAAGCAAACATTGCTGTCCATCTCCCTCGTCAATCCTCAGTGGTGCGTTATACTGCAGGCTGACGCACCTACCGCTTTGTGATTTGTGATTTGTCACAAAATGACAAAGCGCAAAGTCTGAGCGCAGGTTTCCTCCGATCAGAACTTTGTAAGAATGACCAATAACCAATGACAAAATGAAATTTTTCCGGATTTGAATTCAGGAAAATAGAGATCCTGATTTGATTTATACTTTTAGATTCGTCTGATTATCGAAAAGCTTGAAAGTTGTATGTCCAGCCCCAGTCCCGACACAGTTCGCGTTTATTTGCAAGAGATTGGTCAGTACCCCTTGTTAACAGCAGACCAAGAGATTGCTTATGGTAGGCAGGTACAGCAAATGATGGCCATCGAG # Questionable array : NO Score: 2.73 # Score Detail : 1:0, 2:0, 3:0, 4:0.66, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.81, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTACAATCACCTCGCCCCGAAAGGGGATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [11,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.90,-6.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-22] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.15,0 Confidence: HIGH] # Array family : NA // Array 5 2501216-2500959 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP018307.1 Aulosira laxa NIES-50 DNA, nearly complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================= ================== 2501215 36 100.0 41 .................................... AATTGCTTCGCCTATAGCAAAAACAAAAGGAAACAACATAG 2501138 36 100.0 35 .................................... ATCAACCACATCAGCTATATAGAACACTTCATGGA 2501067 36 100.0 37 .................................... TCATACCCGTGAATCGCTCACTCTTCACAGGCTTCAA 2500994 35 80.6 0 T...-......TT.......TT........T..... | C [2500988] ========== ====== ====== ====== ==================================== ========================================= ================== 4 36 95.2 38 GTTACAGTTACCCTTACCCCGCAAGGGGATGGAAAC # Left flank : AAGTTAACCGAGAAGGAACCGAAGCAAGCTAGTTCTCTCCATGAGGGACAGGTGGTGAAGGTGAAAATTTCGGCTGTTAAGGATGATGGGACGATTAAAAGCGTAAAGTATGTAAGTTAACTCAGTATTAATGCTTTAAGTTTTTTATAGGTAAGGCTTGACGAATATATATCTGTGAATCATATTATTTACATTGCAAATTTTTAGTTAAGTCTTACGTGCTTTCTCTAGGCTTAATAGAGAACAGAACCTTGAAAATTGCATAAATATCTTGGTTGTTAGGGTAGATTTCCATACTACCCTGAAAGGAAAAAGTGGTTTTGCGGCCGGGTTACCAAATCGCTGAAACCCTAGTTTTTTCGTAGACCCTGCCGATTGCTTATTCTGTAAGGCTTTCAGGGATTTTTTCTGGTTATTTTTGGAGGGGAGAAAAATAAAATGAGTACCCCGTCGCAAACCGCCTCTGGAAGCTATGGGTGATAAGGGTTTCAAAGCGAGGG # Right flank : AATTGAAATTCAGCACTGAAGTCCTTGCTACGAGACGGTTTTTCAGAAGTAATTTTTGTATTGCGTGCGGTGTTTACTGTTTTTCAAACCCTGAGTGTTACTGCTCTGAAGAATGATGGAAGTATTAAAACTGTGAAATTGATTGATTAATAATGAATTCTTACTACTAACTTCTTCTTAGGTCTAATAGTATATAAAGTAAGGCTATCTTAGCCAGCAATCTTTATAGGAACAAAACATGAATCAACAAATAACCACATACTTGGGTGAATCGCCCCCTGTTCTAGCATTAAGCTCAACTGAATCAACTTTTCAAGCAGCATACAGTACGAAGTCTTTAATAAATAGGAAATTATTATACATGGCAATCGAAGTAGAGTATATAGACGAGTTCGAGCAGTGGTACTTAACGCTTGGCGAAGCAGAACAAGACTCTATTGATGTTGTAGTAGAGTTGCTTGAGGAAAGAGGTGTGAATCTTCGCTCCCCCTATAGCACAG # Questionable array : NO Score: 2.62 # Score Detail : 1:0, 2:0, 3:0, 4:0.76, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTACAGTTACCCTTACCCCGCAAGGGGATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [7,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-8.70,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,0.78 Confidence: LOW] # Array family : NA // Array 6 4036600-4035221 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP018307.1 Aulosira laxa NIES-50 DNA, nearly complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ================================================================================================================================================================================================================ ================== 4036599 37 100.0 35 ..................................... AATTAAATTTTTCGCATCAGCCCCAGAAATCAGAT 4036527 37 100.0 34 ..................................... ACCCCACCATAAACCACAGCTCCACGAATCAACC 4036456 37 100.0 37 ..................................... TAAGCAGGGGATAAGATTCAATCCCGAAACCTATCAC 4036382 37 100.0 35 ..................................... TGCTAACATGATAGTCCCATGCGGCATTTCTAAGT 4036310 37 100.0 35 ..................................... TAATATTCTTTACCAGAGTGAAATATTAGTTCATC 4036238 37 100.0 43 ..................................... GATTCATCCTATCCTCACGGTAACGGGTACACCATTCACACTA 4036158 37 100.0 38 ..................................... ATACAAGTCCCAGCATCCTGCAATGATGAACTCATTAC 4036083 37 100.0 35 ..................................... ATTAGCTATGAAAGGAATACTGCACGGGTTTGGCA 4036011 37 100.0 34 ..................................... GAGGTTGCGCCTGCATACCAAACCACCCTACGGT 4035940 37 100.0 39 ..................................... TGTTGGAGGTGGGAGAAAAAAAGCCACAAGTCCAGAGCC 4035864 37 100.0 36 ..................................... AATAAAATAGCCCTCACGCGAGGGCTATTGCTTAAA 4035791 37 100.0 34 ..................................... CAATCGCCTCATCCTCGACCAAAGTAATATCCAC 4035720 37 100.0 31 ..................................... GTACTTTTCTCTGCTTTTCATGTATGTAGTG 4035652 37 100.0 36 ..................................... AGTGCAAAGCCCCAAATATTCTCATTGAATCTTGTA 4035579 37 100.0 35 ..................................... TTAACTAGAGTGAATCCATCAGGGACGCGATCGCC 4035507 37 100.0 208 ..................................... AATGTCGCACAAGTTTTTAGCACATTTGTTAAGCTCGACTTTATCCATTCAGACATTCTACTGTAGGGTGTGTTAGGCGCATATTTTCGATATGATTTGCCACGAAATAATTATCCTAGCGCCTAACGCACCATCCATGCGGCGGTGCGTTACGGCTAAATTTTGTTGTCTCTTTGTCCAAAATCCTTTCATAGCCGTAACACACCCT 4035262 37 81.1 0 .C..A....T..T.....GG..T.............. | T,AAT,G [4035238,4035243,4035256] ========== ====== ====== ====== ===================================== ================================================================================================================================================================================================================ ================== 17 37 98.9 47 ATTGCAATTAACATTAATCCCTATTAGGGATTGAAAC # Left flank : AAGGGTTATTGTCATGCTCTTTAAAAGCGTGAATGCCTAGTTGCTGGTCGTTAGAGTTTGCCCTTTCCAATGTATACCAGATAGACTATGACAAAAATTTTATGGCATTGACAATACAAATACAGCTAGTTGCAAGTTGCTAAGGTAAGACTATGCAATTTCAATGCTTAACAGCTTATTGGGTGGAAGTCTTGCTGATTTTTTCGAGTGCGATCGCCTATCAAATGCTCAAAGCGTTTGTTAGAGTTGAAATGCAAAAGATTTTTTAGCTCAATGCGCGGATGGGTGGGTGTAGAAAATCTCTCTGTTGAACAAATGGTTGTATTCCTTATAGGACAGTCTGTTGGAGAAAAATTAAATTAAAACCATGCGCGCACTTTACCCAGCTTTAGTTTCAGCATTTTTAAAAAAATCAATTGACATTTTCATGTGCTATGATTAGCCCATCCGCGAAACTGAACCTTGAAAACCAAATAGAGATTAGCTTTCCGGCTTCCGGG # Right flank : GCTCTCATCATCTCTGCTCGTTCCTATGGTGCTGAATTATATATAAGACTAATCTTTAGTGCAAAAGAATTCCTATCTTTGAGCTCTGCAAGATATTTGACTTTTAAATAAGTAGAGCTAATATGTTTTATTACATTTACAAAAGTTAAAGTACTTGATTAACTTTTGTAAAGCAGTGTAAATTACTCACATAGGCAAAAACACGCCTAATTCATACATACATATAACCGCAATCATAAAACAATGACAGCAACCTTACAACAGCGCTCGAGCGCTAACGTATGGGATCGCTTCTGCGAATGGATCACCAGCACCAATAACCGTTTATACATCGGTTGGTTCGGTGTCCTCATGATCCCAACCCTACTAGCTGCAACCGCTTGCTTCGTAATCGCATTCATCGCAGCGCCTCCAGTAGACATTGATGGTATCCGTGAACCTGTTGCAGGTTCCTTAATCTACGGAAACAACATCGTCTCTGGTGCAGTTGTTCCTTCTTC # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGCAATTAACATTAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.27%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.50,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [65.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,4.5 Confidence: HIGH] # Array family : NA // Array 7 4342153-4342906 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP018307.1 Aulosira laxa NIES-50 DNA, nearly complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================== ========================================= ================== 4342153 34 91.2 38 T...T........T.................... CACAAATTTTCGGAGCGGTGGTATACGCAGTTGAAACT 4342225 34 97.1 40 .............T.................... CTGTGAGTGTTAAAGGCTTTAACGCCTTTGCAAGCTTTGA 4342299 34 97.1 41 .............T.................... CAAAAAGACCTTGAGGCCCAGAAAGCTGCTATCGAACAACA 4342374 34 97.1 37 .............T.................... CTGCATATGCACAAGCGTGGAGCAGCAATTCAACTTT 4342445 34 97.1 39 .............T.................... CGGAATATTCTATTTCGCTTTCCTAAGCAGTGTAGAATT 4342518 34 100.0 35 .................................. CTCTTTGAAAAATTTGCAGAGGAGTTTACGTTTAT 4342587 34 100.0 38 .................................. CATTTAAGTAGAGTATTGTTTACTGCAAAAGCAATAAT 4342659 34 100.0 36 .................................. CCTTATATGGCTAATTCTATTTTTGCTTTTCGGATT 4342729 34 100.0 39 .................................. CAAAAATCCTTTACACTCTTATAGGTTCCGTAGGAACTA 4342802 34 100.0 37 .................................. CAGTTAATTCAGCCAATCTGCAAACTGGTAAGGAAAT 4342873 34 100.0 0 .................................. | ========== ====== ====== ====== ================================== ========================================= ================== 11 34 98.1 38 GTTTCCATCCCCGGGAGGGGTAATTGATTGAAAA # Left flank : ATTTGTACATTCATTGTTATCTTTCCGAATTAAATACTGTGTAGAGAGTTAGTTCCGGAAAGGTGTTATGGGCTGATTCACATAGCCGAAAATATTTCTCGTTGCTCTAAACATAACACTTGCATCTGTGATGAGATTGATGAAACTTTACAAGTGCTGATCACCACAAGTAAATATCTTTGTAAGCTATACAGCTAAGTGATTATGGCTTTTGATTTAACCTAAAAAATTTAATTATTATCTGGAGTAGTTTCAATCATAGCCATAGAAGGTAATACAAATTTAACGGTATTATTTGGTTTGAGGGTGTACTACAGATAATACTAAAAAGTTTCTTCTTGATATATCTTTGTATTTCTTTATATATTTCTTGAGATTTGACAGTTTATTTACATCTATAAAGAATGCGATCGCATCCCCACACTCTCACATTTTCTCTTCCCCTTAGTTCAAGTCATGCTGCAAAATGCGATCGCACTACTTCCCCTAAAACTCTCTGC # Right flank : ACCCTAACCTTGTAGAGAGCTTACTGAATAAGGCTTACAGAACCGTAAAACTGAGAGGGGTATGTTTCACCTGTCAACAAGCCACATTTATTGACAATATGGACAGCCTTCAAGTAACTCAAACCCTTATAGAGTAAGTCATCTGAGGGGGTCTACGCAAGAATCAGCATTTGAGCTTTTGCACGACCCCCTCAGGTTACATTTTTTAACACAATGGCTGAAGGAAACTAACCATGAGGTTACAAGCCAAAGATATATATTTATTGAATTTTCAAGGTGCAGCGATTGGTATAAATAGTAGCATAGCCAATTCTGCAAGGCAATCTCTGCCTCACAGCAATTTAATCAGCAAAAGCAAGTATTGCTTTCTTCAAATCTCCTTTTGCTTTCTCAAAAGCTGCTTTGGTTTTCTCATTTCAGTGTATTTAGCAAGCCAAAGCAGATATTGCTTTCTCAAAAGCTGCTTTTGCTTTCTCATTTCAGTGTATTTAGCAAGCCAA # Questionable array : NO Score: 9.16 # Score Detail : 1:0, 2:3, 3:3, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCATCCCCGGGAGGGGTAATTGATTGAAAA # Alternate repeat : GTTTCCATCCCCGTGAGGGGTAATTGATTGAAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.43%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.30,-6.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [51.7-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.41 Confidence: HIGH] # Array family : NA // Array 8 4752275-4750648 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP018307.1 Aulosira laxa NIES-50 DNA, nearly complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================================================================================================================================================= ================== 4752274 37 100.0 34 ..................................... AAATCTTCCCATGCACGTAATTTGGTAAGAGCTG 4752203 37 100.0 40 ..................................... ATTTGCGTAACTATGATGAGCTTTACAGGTGGGGAGGGGA 4752126 37 100.0 31 ..................................... CGCGTGGCCCGCGTGGAGATATTGGTATCGG 4752058 37 100.0 35 ..................................... AACAAGCGCTCAATATTGGCGGTAAAGCCTTACAA 4751986 37 100.0 35 ..................................... ACCACTCTTTTAGATAGGTGCGATTTCGCATTTAG 4751914 37 100.0 39 ..................................... TTTTATATGCTCATACCCTTAGGGTATGAATATTTTTTA 4751838 37 100.0 39 ..................................... GATTCGATGTCGCCCGCGAAAAATACATCAACGCCGGTG 4751762 37 100.0 36 ..................................... GCTTTCAGGGGCGATCGCTACAGAGGGGGCGGCAAC 4751689 37 100.0 34 ..................................... AAGTGGAACTAGTATTTATTTTCCAGTTATTTTT 4751618 37 100.0 36 ..................................... GATGGCGAACTCCCAGAAGAGTATTTGCATTTTGAA 4751545 37 100.0 33 ..................................... TTTTGGGCGTTAGCCCTCTGCGCCAAACCAGAG 4751475 37 100.0 33 ..................................... AGGGTGATTCTTGCGCTTTCATACTGGGTTTTA 4751405 37 100.0 38 ..................................... AGCCTGGCAATACCTATCAAACGCAGTGTTACGAAGGC 4751330 37 100.0 34 ..................................... GGATTTTTGAAGAAGACGAGTGCTGGATGATTGG 4751259 37 100.0 46 ..................................... CTGAAAGAATATGGACTACGCGCATCCTTAAGGGCACCGAGGCCAA 4751176 37 100.0 35 ..................................... GCGAGGGCTATAAGTGGGCAGAAATTTACAGCTAG 4751104 37 100.0 173 ..................................... TGATATTTAATTTCTCTGCATATTCCCTAGCCTGGTTGAAATTTCACCTAATACCAATTTAAATAATGTTGGCGACAGATAAAGTCTTTGTAGGGGCACGGCATCCACAATCTTTTGGTATATCAAATTATGTTACTGGTGCCGTGCCCCTACCAACCCATCTGTCGCGTTCT 4750894 36 78.4 173 T...C..AA.-.G.A...........A.......... TGATATTTAATTTCTCTGCATATTCCCTAGCCTGGTTGAAATTTCACCTAATACCAATTTAAATAATGTTGGCGACAGATAAAGTCTTTGTAGGGGCACGGCATCCACAATCTTTTGGTATATCAAATTATGTTACTGGTGCCGTGCCCCTACCAACCCATCTGTCGCGTTCT A [4750878] 4750684 36 78.4 0 T...C..AA.-.G.A...........A.......... | A [4750668] ========== ====== ====== ====== ===================================== ============================================================================================================================================================================= ================== 19 37 97.7 51 GTTTAAACTTCACTTAATCCCTATTAGGGATTGAAAC # Left flank : ATTGATAAGAGGCAGGGGGCAGGGGGAACGGGGCAGGGGGAAAGGTACAAACCTTGCCCCTTGTGGGCAAAAGCCCCCTTGCTCCTTTTTCTCACTTGGTTGAAGCCCCAACGCCAGTTCTCTCAAGTCGGCGGAGCCGCCCACGAGACTGGCTCCCCCTTGTGGGTGGTTTTTCTCCCCTGCTTCTTCACGTTTTCGCCTTCCCTAATGCATTGCCTGTGCTGCTAAGATTGAATATCAGCCGCCCGCAACCATACTCTTTTCTTGCCAGAATGCGCGGATGGGTAGGTGTTAGAAAAGTAATCTCACCAAAAACCGTTAAAACTATTTGTATATAAGGCTTCCACCGCTTTATTGCTTCTTAATCACCCGCGCGCCTTACAGGGATTGACTTTCAGCTATTTTGGGTTTGCTGTTTCATTCTTGCTTATGTTATGATTGCACTGTCCGCGCAACCGAACCTTGAAAACTATATATACATTGGCTTTGGGGCTTCCGCA # Right flank : TGATATTTAATTTCTCTGCATATTCCCTAGCCTGGTTGAAATTTCACCTAATACCAATTTAAATAATGTTTGCGACAAATAAAGTCTTTGCAGGGGCACGGCATACACCACCTGTGTCAACTTAAGCTAAAAGCTATATAGGGCGGGCGTTGTACAAATACCTCGCGCCCTCATCCCCTAACCCCTTCTCCCGCAGGAGAAGGGGAACTAAATCTCTTGCTCCCTTCTCCCTGTGGGAGAGGGGCTGGGGGTGAGGGCGAAACCTTGCACAAGAGCGGGTTTCACGTTAAGTTGACACCAATGGGCATACACAATCTTTTGGTATATCAAATTATCTGACTGGTGCCCCTAAAATCTGTGGCATTCTTTTTTCAAAATGGTAAGCTATTCTGCTTTTAAGTTGCACAATCCCTCATGAGGTCTGTTGACGCTTGACCGTTGACAGTTAACAGTTAACAGCCTTCATGAGTAGTTATGCCATTTAGAGGATGTTTGAAAAG # Questionable array : NO Score: 7.68 # Score Detail : 1:0, 2:3, 3:3, 4:0.89, 5:0, 6:0.25, 7:-1.46, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTAAACTTCACTTAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.50,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,4.91 Confidence: HIGH] # Array family : NA // Array 9 5561508-5562136 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP018307.1 Aulosira laxa NIES-50 DNA, nearly complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================= ================== 5561508 37 100.0 36 ..................................... AAATATACATCATGAATGATAACACCAAACTAGCAA 5561581 37 100.0 38 ..................................... AACCTCCCACTTCCAAATCCTGCCACCTGCCTTATAGT 5561656 37 100.0 34 ..................................... ATTGGTGTTAAGTCTGGCGTAATGGTAGTTGGTG 5561727 37 100.0 41 ..................................... ACTTAACGGGGTTCTGCCATCAGCACCATGTGAAAGGGACA 5561805 37 100.0 33 ..................................... AGATCAATTGAGGCAGCGCATTGAATTGATGAA 5561875 37 100.0 37 ..................................... ATAGTTACTCTAGACTTAAAGAAAGCTAACAAAACTA 5561949 37 100.0 40 ..................................... TCCCTTCCGTTGATACCATTTATTCCCGGTCTACCATCTC 5562026 37 100.0 38 ..................................... CAGAGATTTTACTGTAACCAGTGCGATCGCACCTTCAG 5562101 36 89.2 0 ..........................-....AC...A | ========== ====== ====== ====== ===================================== ========================================= ================== 9 37 98.8 37 GTTGAAATTTCACTTAATCCCTATTAGGGATTGAAAC # Left flank : AGTACAATCGGAAGTTATGCCGCAGGAATTTGCCAAGCTAACAGTGCCAACACTGTTGGTAGCTGGGGAGTATGACAAGATTATTCCTGCTGAGATGGGGCGACAAGCTGCAGCGATGAATGAAAAAGTTGAGTTTGCCATGCTTCCTAATACAGCGCATTTCCCAATGTTAGAAGATGCTCCAACTTATCTACGACGGGTGGGGGAGTTTTTGCAAATTCCCACAAAAGTTGATTAAAGTTGATGTCCAATCTGACAACTTTGGTTGCAGAATGCGCGGATGGGTAGGTGTTGAAAACTGCATTTATATATAAAGCGCTGAAACTCCTTATCTGTAATAATTTCAAAGATTCATTGCTGTTCTATCACCCGCGCTCCTTACACAGACTGACTTTCAGCGATTTTGGTTTTGCTTTTTCTTTATTGCCTATGTTATGATTGACCTATCCGCGCACCAGAACCTTGAAAACCTTATATTAGTTGACTTTCAGGCTTCCGCA # Right flank : ATTAAGAATAACCTATCCCACTATTTTTAAAACCTCTAAATCTAGTTGTAAAAAATGCCTAAAAACCTTGATTTTTCGTTTTTAATTCTCAACTCAGTCTAAGTTTTCTAGCGCAAATATTATTAGTGGGATAGGTTCAATTAACCCAAACCTAATTCTCGTTTCAATAAATTGATGGAATTAGTACCAATATAATTATCAACCTTAATCAACTTGGGCGGACGAATGATGTCTTCTACCGCCGCTTGTACAGCAGCTTGCACTGCTGCATAACTTGCTTGATCGCTGATAATTACCTCGGCTCGCTTGACGATCGCCTGAAGTTTGTAAGCATCTTTTGGTTGGGTTGTCATTACCAATAGTTCATCTCCCCGGAGTCCGTGAAGAATCACTTCGGCGGCGCGCGCAATTCCAGAACTTAAGCTGACTATGCCCACACAGTTTTCTTTGGGCAAGGTTTTCAACAAATTAAGTTCTTTAGAATAGTCGTAGATATCCAG # Questionable array : NO Score: 9.20 # Score Detail : 1:0, 2:3, 3:3, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAAATTTCACTTAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.42%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-8.30,-7.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : NA // Array 10 5629975-5630656 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP018307.1 Aulosira laxa NIES-50 DNA, nearly complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 5629975 37 100.0 35 ..................................... GCCAGCAAAAGAGCCAAATAGGGATGCTATAGAGA 5630047 37 100.0 34 ..................................... CAGTTTTACTTCTCGGCTTTTGATTCAGAGACTC 5630118 37 100.0 36 ..................................... CATTTTCTTACTAGTAGCGTACAGAATAACCGATAA 5630191 37 100.0 36 ..................................... AACGAGGAGGTGAGCGAGTAAGAAACTAGTTAGGGT 5630264 37 100.0 37 ..................................... CTCTCATGTAAGCGATCGCTAGTTCCAAGGCTTCAAA 5630338 36 97.3 33 .........................-........... TTCGACCAAAACGCCAAACCCAAGCTAATAGTC 5630407 37 100.0 34 ..................................... CAGCAGTTAAAACTCGATTTATTTTTAATGCCTC 5630478 37 91.9 33 ........T...T...............A........ CTGTCTTCTAAATGTGTTTATGCAGAATTTTAG 5630548 37 78.4 35 ........TT.T......A..C.....A.T......T ATATTATATGCAAGTCCACAAAGTGAATCACAGTT 5630620 37 70.3 0 C......GTA....TG.......TA..C....A...T | ========== ====== ====== ====== ===================================== ===================================== ================== 10 37 93.8 35 GTTGCAACCGTCCTCTCAGCAATGGGAGGGTTGAAAG # Left flank : CAAAAGAATTAGCACTTTCTACCTACCATAGCCGCCTAGCTAGGTGACATTGACAAATATCTGAACCTTGACAATAAAATAATCAATAGCGCCGCAGTTCATGCTGCTTGCAGCCTCTGAAGTGTGTTAAATGAGGGTTAGTTTGACTGTAGCAATACAGTCTTGCTTTCTGACCCTGGTAGCTGCTCACCCTGATGCTGCTGTCAACTGACAGGATAGGTGCGCTCCCAGCAATAAGGGCGCGGATGTACTGCTGTAGTGGCTACTCAATCACCCCCGACCAAGGGGGAACCCTCCCCAATTCTTCATTTGAAGGACTAAAGAATGGTCAAAATTCCGCTCTTGGTTCGCGCAAGTTATGAAAACCTTATACTACAAAGAATTTAGTCATAAATTTCTTTTGTAGATAATTGAAAAATTACATCCTGGGAGGATTTTTGAGAAGGTTAGCTCAAGCTGGGTTTGAAAACCCTTCTAGACAAGGGTTTGAGATGACAGCA # Right flank : TTTTATAAGCTATTCCTGATGCTCGTGGTTTTCTATTGAAGCGTTTCTCGTATTAAGTTAAAGAACGGGTATAGCAACAATTTTGAAAAACTTTAGAACGTTTAATAATTTAATAACCCCAAGTATTTAGGATAAAATAATAAATTCTCTTGTTTGTGTGGGTTGAAAGCAAATCCGACTGCTGGCTTGATATCATATAGAGTAAAGCCTACATAACTCATGAATTCTATATTAGATGACATTAATTTGTCACTATTTCCCTACAAAGGCTTATCTAGTTTCAGCGACATTAATTTGTCTTCAACGACAACAATTTGTCACCGACGACAAATAATTAGTCACTGTACATTTGCGAATCGCGACATATAATGTACGAATGTAAAATAAACATAAAGCCAGCAGTCGGATTTGAACCGACGACCTTCCGATTACAAGTCGGATGCACTACCACTGTGCTATGCTGGCGGGCTGAGGTGTTGCTCTTAAGCACTAACCGATTT # Questionable array : NO Score: 2.95 # Score Detail : 1:0, 2:0, 3:0, 4:0.69, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAACCGTCCTCTCAGCAATGGGAGGGTTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-10.70,-5.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-29] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.15,0.27 Confidence: MEDIUM] # Array family : NA // Array 11 5840424-5839365 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP018307.1 Aulosira laxa NIES-50 DNA, nearly complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================== ================== 5840423 37 100.0 35 ..................................... AAAACTTAAATGATTATTAATAAGTCCTTGTAAAG 5840351 37 100.0 33 ..................................... GGGATTAAGTTACCTGAAGAAATTCAGCCATTT 5840281 37 100.0 33 ..................................... GATAGTAAAATATTCATTACTAGTAGGGACAAG 5840211 37 100.0 31 ..................................... TCTTGCTGATAAACCTCATAGCCCTCTAGGT 5840143 37 100.0 34 ..................................... TGTACATAGCATTAGTAAACTTATCTGTAGCGTT 5840072 37 100.0 32 ..................................... AATAACCGCAAAGACATCACCAGAAAAGTTGT 5840003 37 100.0 39 ..................................... TAAATCCCCGACTGAAACTGATGCTACGTATAGACGCAG 5839927 37 100.0 35 ..................................... GCGCTGACTAAACTTATTGAGCCATAAAACCTCAG 5839855 37 100.0 41 ..................................... GCTCTACTCTCTTAGGTGCAACTTGGTAGGCAGAAGCCATC 5839777 37 100.0 34 ..................................... TATCTGCAAGTCACTCAAAGACATGGACGTAGAG 5839706 37 100.0 34 ..................................... AGAATTACAATACTGTGCTTCTAGCGAGTATCTT 5839635 37 100.0 42 ..................................... TCTATAAGCCACTGTGCATATTTACTGTGTACATCCTTGCAC 5839556 37 100.0 40 ..................................... CTACAGAGATCGTGCTGGGGTATGGTGGTTTACGTTTAAA 5839479 37 100.0 37 ..................................... TAGCTCGGAAAGGGACTAAATAACCGGAATTAATAAG 5839405 37 94.6 0 ...........................A........A | T,ATC [5839367,5839372] ========== ====== ====== ====== ===================================== ========================================== ================== 15 37 99.6 36 GTTGAAATTTCACTTAATCCCTATTAGGGATTGAAAC # Left flank : GATATGGCAGTGGCATTATCCCTACTAAACACGCTGTACCTCTCAATCATGAGAATTCTACTAATCCAGGTATGCAAGATAGCAGTACTAATCAGCCGAGAATATCTTCTTCCCGCAAGCAACCGTCTTCTAATCTGATTAATCGCATCATGCGTTCATTTACCAAACCCAAAGGTGTTAAAAAAAGAACAAGAAATTAAATTCCATCTTGCTTGAAACTTGGTAGAGTATAATCTATCAGCAAAACTCGTCAGGTTACTCTTGCTTCCCAGATGCGCGGATGGGTAGGTGTGGAAAATGTAGTCTCACTCAAAATAGGTGAAACCATTTGTGTGTAAGACTTGCACCTATTTCTTGATGTTCAACCACCCGCGCGCCTTACATAGAGAAACTTTCAGTCATTTTGGTTTTGCTTTTTTGCGATCGCCTATGTTATCATTGCTCCATCCGCGTAACAGAACCTTGAAAACCGCATATACATTAGCTTTGGAACTTCCGCT # Right flank : GTAAATCTTAAGTAGGGTGTGTTACGGCTATGAAAGGATTTCGGATACAGAGACAATGATATTTAGCCGTAACGCACCGTCGCGTGGATGGTGCGTTAGGCGCTAGGATAGTTATTGCGTGACAAATTATATTGAAAGTCAGCGCCTAACACACCCTACAGTAATTTTATTTTTACTTTATAAATAACCTCTTAAGTAGGGTGTGTTACGGCTGTGAAAAGATTTGAAACTTAGAGAAAGATTAGATTTAGCCGTAACGCACCGTCGCGTGGATGGTGCGTTAGGCGCTAGGATAATTATTGCGTGAAAAATTATATTGAAAATAAGCGCCTAACACACCCTACAGTAAAATTTTACTTACTTTCTTCAGGATTAAAACCCTTTGCTTTCAACCAAGAATAGATGATAAAAATGAAGATGAACGCTATAAAAAAGCCCGCACAAGCGGGCTTTTAATTGATTACCAAACTCTACAAATTGCCTATTACCTTATGCAACAT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAAATTTCACTTAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.50,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [65.0-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,4.5 Confidence: HIGH] # Array family : NA // Array 12 6507896-6507134 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP018307.1 Aulosira laxa NIES-50 DNA, nearly complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ======================================= ================== 6507895 35 100.0 37 ................................... ATAGCTTGCAAATCAACTAGTTCTGTATTCAACAATG 6507823 35 100.0 38 ................................... GGTTATGAGCCATGTAAAAGCTGCCATGTTTTGCCAGA 6507750 35 100.0 37 ................................... CAACTTAGTCTGCCCCAACCTTCGCCTGCTGATATAA 6507678 35 100.0 39 ................................... CTGTCACTTGGACAGTTGATGTAGAATTTCATTTTTTTG 6507604 35 100.0 36 ................................... CTACTTGGAAAAACCATAGTATCCATGCAATGATAA 6507533 35 100.0 35 ................................... AAAGCTTGCTTGCGCTACTACACCTTCCATTACTG 6507463 35 100.0 39 ................................... CACTAAGTTTTTCAAGTCATCGGTTGTACCGTGAAAACA 6507389 35 100.0 38 ................................... CTAAAATTCTTTCCCTTTCTATTTGGGCATCCCTTAAA 6507316 35 100.0 39 ................................... TTGATTTCAAACTTTCAATCAAATTTTCAAAAACATTTA 6507242 35 100.0 39 ................................... AAAAGTGTTTAGCCTGTCAGAAAACATAGCTTCCAAAAG 6507168 35 94.3 0 .............................TA.... | ========== ====== ====== ====== =================================== ======================================= ================== 11 35 99.5 38 GTTTTCAAATCATTACCCCTAACGGGGATGGAAAC # Left flank : TATTCAATTCGGTATATTCAGCAAGCAAAAGTAGATATTGCTTTCTCTCAAGCCGCGTTTACTTATTCAATTCGGTATATTTAGCAAGCAAAAGCAGATATTGCTTTCTCACAAGCTGCTTTTGCTTTCTCCTTTGCGTAATTCCCTCAAAAATATCATTATGACTATGTAACTAAATTTTTTGGCTTTTCAAGTTACAAGTAATTTGTTATACTATGCCCTAATCGACACAGAACCTTGAAAACTGAATATCAAGTTTCCTGTTGAAAACAATAGTGTTTATTTTAACTATTGACACTTAAATTTTTCGCGGGGGTAGGCTAATCTCTGAAACCCTGATACTTTCGTTGACCCCCGCGAAAAGCTTGCTGGGTATGAGTTTGAAGTACCTCAAACTATGTCTGATTGTCAATAATTTATGCTTGTTGACAAGCAAATTAGACCCCCCGCGAAAATGGGTATCTCTAACCCTTTCTGGGTAAAGCTTCCAAAAGGGTAGG # Right flank : AGCCATGAAAAACTCAGCAAATATTTGACGGTGCGTTACGCTGGCGCGATAACACACCCTACCAAATTACTAAATGTGATAGAAAAATGTTGATATCCCAGCGATCAGTTTTTTGCACATTAAACAGGTTTTTTAACCGCCTTCTGCTGTTTGGTTAATTCGATCATCTCTTCAAAACCGAAGCGATCAACCAATTCAATTAATGCTTTGGCAAGGCGATCGCTTTTTGGGGGAATTTGCTCAATTAATCTCAACACTTCTTTGCTGTTAACTCGCAGCGCTGCTTGATGCAGTTGTTCTATCCATTCTCTCGGCATTACTTCTAAGTCTGCAACTGTTAATGAGTTGGTGGGGGTGGATGCACTATTAGTAGATCCAATTTCCATATTTTGCTGCTGGTTCGCTGCTTGGGCGTAAACGTAGCGCACACCCAAGTGTTCCGCCATTTTGTCAAAGATGATATTTGCCCGGAAGGGTTTGCGAACAAAGTCATCAAAGCC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTCAAATCATTACCCCTAACGGGGATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.60,-6.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [51.7-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.41 Confidence: LOW] # Array family : NA // Array 13 6766649-6766024 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP018307.1 Aulosira laxa NIES-50 DNA, nearly complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 6766648 37 100.0 36 ..................................... TCTTTTCTCTGACACTTTATAATTTACAAAGCATCT 6766575 37 100.0 36 ..................................... CTCCTTCTGGAACACTAAATATTACTTCTGCATTAG 6766502 37 94.6 38 ...........T.........A............... TCTGATGCTAACTCCATTAGCTTTGCAATAATCGGATC 6766427 37 91.9 35 ...........T.........AT.............. AAGAAATCTACTAGTGTAGAACCATTCATCCTTGA 6766355 37 97.3 39 ...........T......................... CCATCTTCATACAAAGAAACCAGAACGTTTCCATTCTGG 6766279 37 100.0 37 ..................................... AGCTACTGCGCCGAAATCGATAATTGAAGTTAACATT 6766205 37 97.3 36 ................A.................... GCGAATGTGTGACGATTAACGTATGGCTTACGATAT 6766132 37 97.3 35 ...........T......................... ATAAAACTATTACTCATTCCCAAAATCTCAGCGAT 6766060 37 86.5 0 ................A....AT....A........G | ========== ====== ====== ====== ===================================== ======================================= ================== 9 37 96.1 37 GTTTCCACAACCTATTCCCCCGCAAGGGGATTGAAAC # Left flank : CAGCCCCTCTCCCACCAGGAGAGGGGAGTAAGAGATTTAGTTCCCCTTCTCCTGCGGGAGAAGGGGTTAGGGGATGAGGGCGCGAAGGATTTGTACAACGCCTGCCCTATATAGCTTTTAGCTTAAGTTAACACCAATGGGCACTGCCGTGACCTCTAGAATATTATTGATGTGTCGCAAACATTATTTGATTTGGTATGAGTTTTGTATTCGTGCAAGAAGTCTAATTTATTGGGACTAAAAGCTAGACAAGATTTGTAAGTGGTTTTATCATTATGATGAATTTAACAGCTTGATGTTTGGCAAGTCGAAGTGAGGGCGAAAACCCTGGGGGATATGCCAAAATCGCCAGAACCTTGACAAGTGAATAATTACAGCGTTTTAGCAATCAAAAAAGTTGCAAATTAGTTTCAATAAGGTGGGCTGAAAATGATTAAAATTTTCGATCTGCCAAAATGCTTTCCAGGAAGCTTGCTCTGGTTAGGTTTCAATACCGAGCT # Right flank : GATAAACACCATCTGTCAAAGAAAGTCTTCGCCTTGTTAAAGAAAGTCTTCACTTTGTTAAAGAAAGTCTTCGCCTTGTTAAAGAAAGTCTTCACTTTGTTAAAGAAAGTCTTCGCCTTGTTAAAGAAAGTCTTCACTTTGTTAAAGAAAGTCTTCACTTTGTTAAAGAAAGTCTTCGCCTTGTTAAAGAAAGTCTTCACTTTGTTAAAGAAAGTCTTCACTTTGTTAAAGAAAGTCTTCGCCTTGTTAAACAAAGCTCTAATTTTTGCAAATACGGTGTTCAAGTGCGATCGCCTCACCAGTCATCAACAATTCTGGGTGAGGGAATGCGATCGCATCACCCTAAAGAGAATGAAAACACTTGAGTAGCAACGTTTCCGCTTGCAAGGCTGATACCATTTTGAAAAAAGAACGCGACAGATGAGTAGGGGCACGGCACCAGTAAGATATTTGATATGCCAAAAGATTGAGGATGCCGTGCCCTTACAAAGAATTTATCT # Questionable array : NO Score: 5.65 # Score Detail : 1:0, 2:0, 3:3, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.59, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCACAACCTATTCCCCCGCAAGGGGATTGAAAC # Alternate repeat : GTTTCCACAACTTATTCCCCCGCAAGGGGATTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [8,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-8.80,-8.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,5.28 Confidence: HIGH] # Array family : NA // Array 14 6830080-6829393 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP018307.1 Aulosira laxa NIES-50 DNA, nearly complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 6830079 37 100.0 34 ..................................... CCAATAAATACAGTATTGTAAAGATTGCTTTATA 6830008 37 100.0 34 ..................................... ATTCTGAACAGAAATCAAAGAAGTACTAGCAGAA 6829937 37 100.0 37 ..................................... TTGGACTTCCGCGCTTGAGTCTGAGGTACTTTGGAAA 6829863 37 100.0 34 ..................................... ATTCTCCTAGATTTTCCTCCACTTCCTCAATGTA 6829792 37 100.0 33 ..................................... AAAGTCTCGCTTGCTCCTAAATCAGTAAGAGAC 6829722 37 97.3 34 .......................G............. CCATAGAAATAATTATTAGCTGTTACTTGATTCC 6829651 37 100.0 35 ..................................... TCAATTTATTGAGCAAGTTGAAAAGAACATTAGGG 6829579 37 100.0 36 ..................................... ATTAGTCATTGGGTATTGGGCATGGCGATCGCTTGT 6829506 37 100.0 40 ..................................... GCCTTATATACTGTGGCCCCTTGATATGGAATAGCAAAAG 6829429 37 89.2 0 .............CA.CC................... | ========== ====== ====== ====== ===================================== ======================================== ================== 10 37 98.7 35 GTTGAAATTTCAAATAATCCCTATTAGGGATTGAAAC # Left flank : TGAATGTTGTTATATCCTACGATATTTCCGAAGACAAGCGCCGCACAAAGATTCATAACATTCTCAAGTCTTATGGGCAATGGGTGCAGTATAGTATTTTTGAATGTCAGTTAAATGACACCCAGTACGCCAAACTGCGATCGCGCTTGCATAAGTTGATTAAAAGCGATACGGACAATATCCGTTTTTACTCTCTGTGTAGTTGCTGCTTTGGTAAGGTTGAACGTATTGGCGGCGAACCAGTCCCCGATGATACTATTTTCTTTGCCGAATGCGCGGAGGGGTAGGTGTGGAAAAACTAGTTATCCCAAAAATTAGGTGAAACTATTTCTCTGTAAGGCTCTCACAGTTTAATTGATATTCAATCACCCGCGCGCCTTACAGGGATAGACTTTCAGGAATTTTGGTTTTGCGTTTTCACTATTGCCCGTGTTATTATGGCGCTATCCGCGCAACAGAACCTTGAAAACCGCATATAACTTGACTTTTAGGCTTCCGGT # Right flank : TTAAAACCGCCGCAAGCAGCATCATTTACTAACTTGATTAAAGTTGAAAGTTCACAAACTTATACCATTTTGAAAAAAGAACGCGACAGATGGGTGGGGGCACGGCACCTATAAGATCTTTGAATATACCAAAAGATTGTGGATGCCGTGCCCCTACATGGAATTTATCTGTCGCAAACATTATTTGAATTGGTATTACTCTTTTTTGAGTTTTTTACCATAAGTAAAATAGCAACTCCTGAACGGGTTGCTATTTTACTTAATAAGGCTAGATTTACACTTTATTCCGAATTAATGGTTCAATTTATCATGTTCGTCTTGGGTAACCCGGTAGACTTCCCTATCTACCATATGAATTTCATATACTGCATCTTTGCCTGGGAAAAATAAAAATCCTGGCTCTTTTTCTTCTACCTCTACTATTTCTGAAATTGCATTAGGATTAATCTCAACATGAATGCCATCTGTTGTTGTTAAATCTACAGGTTTCATGTATACCT # Questionable array : NO Score: 9.20 # Score Detail : 1:0, 2:3, 3:3, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAAATTTCAAATAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.27%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.50,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,4.91 Confidence: HIGH] # Array family : NA // Array 15 7265542-7264334 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP018307.1 Aulosira laxa NIES-50 DNA, nearly complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================== ================== 7265541 37 100.0 34 ..................................... AGGAATGCGCCGCTAGCAGAACCAAAAGTTAATC 7265470 37 100.0 35 ..................................... CAATTCTTAAAGTGTATTTAGGTTCCCATTTTAAG 7265398 37 100.0 34 ..................................... CTTTTTAATAACTCAATACTAATTTGGCTGAAAT 7265327 37 100.0 37 ..................................... ATAATTACCCTAATATCATGAAATGCCCATGACTTTG 7265253 37 100.0 35 ..................................... ACTTCACTTCCTGATGAAGCCCCCGCCGACAACTT 7265181 37 100.0 37 ..................................... GCAACTAGCGGGGTGATTTCAGCTTTTTTCATGGATG 7265107 37 100.0 39 ..................................... GATCAACAACTCCCCCATTCTTTCCACTTCCGACAGTGA 7265031 37 100.0 38 ..................................... TAACTGATACTACCAAAAACCGCTCAATTGTGCGCGAA 7264956 37 100.0 36 ..................................... AATCAATCGGCGTATGGGGCAATACAGGGCATTCAT 7264883 37 100.0 34 ..................................... TTCTCAAGGATGAGGGCTACCGAGCGTTAGGGGA 7264812 37 100.0 35 ..................................... TGACATCCTATCGTAGACACGCTATATTAGAAGAG 7264740 37 100.0 35 ..................................... GGGCTATTAATCATTGATGAATGTAGCCAGGTATT 7264668 37 100.0 42 ..................................... AAACCATTAGTCCAGGGTTTTACTGTAACTGCTACTCTCTTA 7264589 37 100.0 34 ..................................... GAATATCTTTGCTAAACCCACCTCCATCATTGTG 7264518 37 100.0 34 ..................................... TGAGATTTTGAATTTAGGAATTAATCCTGAAAAT 7264447 37 100.0 36 ..................................... AGAAGGATTTTTACAGCCATTTTGAGCGCTTGATTT 7264374 37 83.8 0 ..........T...........G..T.C.....CT.. | GGTG [7264350] ========== ====== ====== ====== ===================================== ========================================== ================== 17 37 99.0 36 GTTGCAATTTCACTTAATCCCTATTAGGGATTGAAAC # Left flank : ACCAACGTGATCGGGTTGTCTATCAACGAGCGCTCATCCATAGAGAACATCGGTTCCTTCACAACCAACATGATCGGGTTCTCTATCAATGAGATCTCCTTCACGCACAACCAGATCTCCTTCACGCACAACCAGCTCTCCTTCACAACCAACGAGCCAATTTTTCGATTAACTAGCTCTCAATAATTGATGTTTTAGCCTTCCCTAATGCATTGCCTGTGCTGCTATGATTGAATATCAGCCGCCCGCAACCATACTCTTTTCTTGCCAGAATGCGCGGATGGGTAGGTGTTAGAAAAGTAATCTCACCAAAAACCGTTAAAACTATTTGTATATAAGGCTTCTACTGATTTATTGCTGTCCAATCACCCGCGCACCTTACAGAGATTGACTTTCAGCTATTTTGGGTTTGCTGTTTCATTATTGCTTATGTTATGATTGCACTGTCCGCGCAACAGTACCTTGAAAACTATATATACATCGACTTTGGGGCTTCCGCA # Right flank : CCTGCGGGAAGGCTCCGCCTACGTCGTTCCTCTTCACTGTGGACAGGCTTCGGGAGCGATCGCACAACCATTAGCTAGATGACGAACCCAAGCACTAGGGGCAATTTTAAGACTTGTGTGTATACCGTAGCCTGGTGGAAGAGGGGCACAGGGTGAGGGCGAAACCTTGCAACTAATAGGGTTTCACGTTAAGTTGACACCACTGGTAGGAGCGATCGCTCCTACTCCCCTCCGACTGCTAGGTTAAATTACTTGCTTTCTTAACTACTTCCTTTAACTCTTCAAAGGAGATACTACCGTCTTTATCTCCATGCATAGCTAGCAATTCCTGGGGGCTACTGACACCTGTTTCAGCCGAGATAATTGCACTTAAACCAGGGCTTAAAAAAAGCTCATTGATGGAGATTTTGCCATCTTGATCGATATCCAAGGTATTAAAAAGAGATTGAAGCTCTTGCTCGGTTGCCATGACTTTCTATTAGAATTAATTTTTAAATTTA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAATTTCACTTAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.50,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [63.3-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,4.5 Confidence: HIGH] # Array family : NA // Array 16 7504451-7505495 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP018307.1 Aulosira laxa NIES-50 DNA, nearly complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================= ================== 7504451 37 100.0 34 ..................................... CTTGATTTGCAAGGGTTTGAGGGGTGCTGACTGT 7504522 37 100.0 34 ..................................... ATATACTATCGATGCCCCAGTTTGCCTGCCTTTC 7504593 37 100.0 41 ..................................... GAATCAGCAATAGCTAGCGATAAAAACGCTAGTAAAGGCAA 7504671 37 100.0 35 ..................................... TTGCTGCTTCTATGTATTCGGGTGAAGGATTTTTA 7504743 37 100.0 34 ..................................... ACAACTCTTGGCGAAAACCCACTCATTGAATTTC 7504814 37 100.0 34 ..................................... CTAATAGCCTCCAGTATTTTGATAAACCTATTAC 7504885 37 100.0 37 ..................................... GTAACTTTGATTGTCGGTAGTGTCAATAGGATAATGT 7504959 37 100.0 34 ..................................... GGATCTGGGGTGTAATTCGGAATATCAGAATTTG 7505030 37 100.0 34 ..................................... TCGATAAGTAACAACGGCTTTTTGCTTCCTTTAA 7505101 37 100.0 34 ..................................... ACAGTGGTGGGAGTTCCAACTTTCACTCCATGAG 7505172 37 100.0 37 ..................................... CTTTTTCCTCGTCCATCATTGCCTTGTATTGGCGCTC 7505246 37 100.0 32 ..................................... TAAATTGGTTCGCTTCTAATGGGCGTATTATT 7505315 37 100.0 36 ..................................... AAGAGAAGGTTAAGGCGATTTTCTTATCCAGGTAAA 7505388 37 100.0 34 ..................................... GTGACATTGCCAGCACACTTACTCAAGCATTAGC 7505459 37 97.3 0 ................................A.... | ========== ====== ====== ====== ===================================== ========================================= ================== 15 37 99.8 35 GTTTAAACTTCACTTAATCCCTATTAGGGATTGAAAC # Left flank : ACCAACGTGATCGGGTTATCTACCAATGAGCGCTCATCCATAGAGAACATCGGTTCCTTCATAACCAACATGATCGGGTTGTCTATCAATGAGCGCTCCTTCACGCACAACCAGATCTCCTTCACGCACAACCAGCTCTCCTTCACAACCAACGAGCCAATTTTTCGATTAACTAGCTCTCAATAATTGATGTTTTAGCCTTCCCTAATGCATTGCCTGTGCTGCTATGATTGAATATCAGCCGCCCGCAACCATACTCTTTTCTTGCCAGAATGCGCGGATGGGTAGGTGTTAGAAAAGTAATCTCACCAAAAACCGTTAAAACTATTTGTATATAAGGCTTCTACTGATTTATTGCTGTCCAATCACCCGCGCACCTTACAGAGATTGACTTTCAGCTATTTTGGGTTTGCTGTTTCATTATTGCTTATGTTATGATTGCACTGTCCGCGCAACAGTACCTTGAAAACTATATATACATTGGCTTTGGGGCTTCCGCT # Right flank : CAAGGCTCACTTGGATGAGTATGAGAGCCGAGGTTGCAAAAATTCTCTCGCAAATAGATGGCGGTAAGGTATCAGTGGCACAATATCAAAAATGGCTGAAGAATAAAGCTGTAGCCTACGGTACAGAGCCAAAAGCCTTTCTTAAATATGCCGCATTCATGCATGAAATAGGGATGCTAAACAAGCAGCCAAAATCAATTGATGAATTAATTTTACCGACACTTCAAGGTGCTGGTGGAGATTAATTTATGGCAGATTTAGACTCGTTGATTGCAGCTAAAAATGTGCATATTAGCTACAAAGATAGTAAGCAGAAATTTACGGCTGTACAAGATGTTAACTTTAGTGTGAAATCGGGAGAAAAGTTTGCCATCATTGGGCCTTCGGGTTGCAATACTTGTCGGTTAAGGGGGAAAGGGGAAGGGGAAAAGGGGCAAGAAAAAACCTTTAACCCTTACCCTTTCACCTTTTCCCCAAACCAAATTCCGAGTTGAAAATCC # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTAAACTTCACTTAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.20,-7.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [51.7-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.37 Confidence: HIGH] # Array family : NA // Array 17 7799951-7799554 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP018307.1 Aulosira laxa NIES-50 DNA, nearly complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ====================================== ================== 7799950 36 100.0 38 .................................... GAAATTAAGCATTTTTTTGTCCTTTTTGAGGTTCTTTT 7799876 36 100.0 34 .................................... TTGTTTTCAGTTTTGTAAACTAAAATTCCTTTGA 7799806 36 100.0 38 .................................... CCATAATTTCCACATGAAGTTAGTAGCACAGATAAAGA 7799732 36 100.0 36 .................................... GCTGGTATTCATCAGGGTAAAACAATTTAATTTCTC 7799660 36 97.2 35 .............C...................... TGCGATAAGGATTTTTTTACTACCTAAATCAACAA 7799589 36 80.6 0 .....TGC..G.........T.....AT........ | ========== ====== ====== ====== ==================================== ====================================== ================== 6 36 96.3 36 CTTTCCAATCACATCGCCCCGAAAGGGGATGGAAAC # Left flank : CAAAGTGTTCGGTTTGTTAAAGAAAGCGTTCGCCTTGTTAAACAAAGTGTTCGGTTTGTTAAAGAAAGCGTTCACCTTGTTAAACAAAGTGTTCGGTTTGTTGACTAGTGATCGCATTTTGTTCACGTACCCAAGCAGGCGATCGCACATTTCCTCTGTTGGTTCAAAATTGCGTGTAGACATCGCCTATCAAGCCTCTAACAATCTTTACTTGCAGATGCGATCGCTCAAAACCCCTGCGATTTCTGTAAACATTATGTAATAAATTTGACTTATACAGGGAAAAAGTTATATCTTAAAAATAGCGTGCGTCGCTCATCGACGCATCTCGCCCGAACCTTGAAAACCGCATAAATCCGTTGAGATGCGTCGATGCCTTATACAGTAAGGTTTTCAGGCTGCAAAATCGATGCTTTTGAGAAAATTTTTGATGATTTTTCAGAGATGCGTCGATTAGGGGGTCTCAAACCCTCTCCTAGTAAGGTTTCCAGAAGTGAACT # Right flank : TAGATCCCCGACTTCTTTAAGAAATCGGGGATCTGATCTAAACTTTGCGATCGCAGATTAAATCTTTTACCCCTCACGGGGATGGAAAAAGTTGAAATGTCTAATGAGATCGCATTCAGCAAGAGAATTTTTAGTGCGTATAGTATAAGATTCACACCATATCGCTACTATAAATTCAGTATTGTGATTTCCTATTTTAAATTTAATCAAGGATGGTTCGTAAACTTTTACCCACATCACAAATGATATTAGTCCATATACCCAGTTGGCATTTGCGTTTCAACAGTGTTCTCTGAAATTGGGCGGCTACCATCTATTTCTAGAGTATCTTGAACTTGAAAATTATTCTTAGCAATCGGACGTTGTCCGTCTATCTCCAGAATTTTTTCTACCTCTAAATCATTAGGGTCAATTGGCCTTTTGCCATCTAATGTTAACATCTCATGCTCTGGAAAATCACTCTTACCAATCGGGCGTTGTCCATCTATATCAATTGTTTT # Questionable array : NO Score: 6.07 # Score Detail : 1:0, 2:3, 3:0, 4:0.81, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTCCAATCACATCGCCCCGAAAGGGGATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,11] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-8.60,-8.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA // Array 18 8414311-8413191 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP018307.1 Aulosira laxa NIES-50 DNA, nearly complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 8414310 37 100.0 33 ..................................... GGTCAGGAAGAACCGCCTGAGACTGTTGAATTT 8414240 37 100.0 32 ..................................... CTATTAGCAATTATGGTTCATGGACGATGGAC 8414171 37 100.0 34 ..................................... TTAAAGATGAAATCGAGCAAGCTGAAATAGATTT 8414100 37 100.0 37 ..................................... AATTGAGGATATTGATGCACTGGTGCGTAAGCATAAG 8414026 37 100.0 35 ..................................... TCATACAATTGAGAACTCATCCATTAATTGAGCAA 8413954 37 100.0 36 ..................................... TTAAAGATGAAATCGAACAAGCTGAAATAGATTTAT 8413881 37 100.0 38 ..................................... AGACAATTTAACCAAGGCTAAAACAAGGTATATAAAAT 8413806 37 100.0 34 ..................................... AACCAAAGGGCGATAAGCAATTCTCTATTTACTA 8413735 37 100.0 40 ..................................... TGCCTACCTTTTTTGCGAATGATGTCTAGACTTGGTAGTG 8413658 37 100.0 35 ..................................... AAGGGTGATTGAAGTTAACAATGAGAAGCTATCAA 8413586 37 100.0 33 ..................................... ATTCGATGTGTAGGTAAACCATTTATTACTTCC 8413516 37 100.0 36 ..................................... TACATCTGATAGTACGACAGAGACAGTGGACTGCTG 8413443 37 100.0 35 ..................................... AACATTGACAACGCTACCACTACCAGTTCCCGGCA 8413371 37 100.0 36 ..................................... TGCTACCAATTACAGCAGTAGCAGAAAACCTCAACA 8413298 37 100.0 34 ..................................... TGGCCATGATGAAAACCAATTAGAACGCACAAAC 8413227 37 81.1 0 ....A..............T.......AA...A.G.G | ========== ====== ====== ====== ===================================== ======================================== ================== 16 37 98.8 35 ATTGCAATTTCACTTAATCCCTATTAGGGATTGAAAC # Left flank : ATTTAGGGGAGGATGATACTGAGCGCCCTTTTGACTTAAGTCTGGTGCAACCTGTCACTGAAATTACTAATTCGTAATTCGTAATTGGTAATACTCTTGCTGCATTTCTCACAAGCAGCGATACAGCATATCTATGTTAGGTTAAGCGCTGGCTTAACCTAACATGGATATTGAAAGCTTCACTTATATTTTTTGTGATGTGGTTGCTGCTTTGATCAGTTTGAATCTATTGGCGAAGAACTAGTCCGGAATGATACGATTTTCTTCACGGGATGCGCGGATGGGTAGGTGTTGCAAAAGCGGTTTCCACAAAAATCTCTGAAACTATCTTTGTATCAGGCTTTTCAAGCTCCATTGCTGTAAAATCACCCGCGCACATTACAGAGAAAGGCTTTCAGCGATTTTGGTTTTGCGTTTTTACTATTGCTCATGTTATTATGGCACTGTCCGCGCAACAGAACCTTGAAAACTGCATACACAGTGCCTTTGGAGCTTCTGCC # Right flank : TGTATTGAGCAAAGTAAAAATCAAATAACTGTAGGGTCTATTAGGCGCTGATTTGCAAGATGATTTGTCACGGGATAGCTATGCTAGCGCCTAACGCACCATTCACGCGGCGGTGCGTTACGGCTAAATTTCTTTATCTCTGTGTCCCAAATCCTTTCATAGCCGTAACACACCCTACTGGGCTGACTCCATAGCAGATGTTTTTGACAAAATACTTGCGTTGTTAAACAAAGTGCTTGTCTTGTGTATACGCCACTCTACAAACTAAAAATCAAAGGTTGTCCGCAACACTCCAACATATTGGGTATTATTGCTGCTATTGTTCTCTGGGTTGAGAATTACCCAAAAGCCGGGAGTCACTGAGATATTATCGTTGAGCCGCATACGGTAAAAGGCTTCGATATGGTAAGCATGGTCGCTTTCTTGACGGATATCGCTGCTGGTAACGTGGGGTGGGATACCAAATAAGATTCCTGGGAGATTACCTCTTCCTCCGAAAT # Questionable array : NO Score: 9.20 # Score Detail : 1:0, 2:3, 3:3, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGCAATTTCACTTAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.50,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,4.91 Confidence: HIGH] # Array family : NA //