Array 1 11574-10753 **** Predicted by CRISPRDetect 2.4 *** >NZ_QXDL01000116.1 Calidithermus terrae strain DSM 26712 contig_116, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 11573 30 96.7 31 .............................A CCTCGGCCAGCTCCAGCCCGCGCAGCCGCCC 11512 30 100.0 31 .............................. CGGCGCTCGAGGCCCTTGAGGTCGCCGCTGA 11451 30 100.0 31 .............................. CTAAAGCGAAAAGCCTAAAGCAAAAAGCCTA 11390 30 100.0 31 .............................. TGGCCCAGGGCGAGATGGGCATCGGCGAGTT 11329 30 96.7 31 .............................A TGGCCTCGGGCAGATCGAGGCGGGCGGCCTC 11268 30 100.0 31 .............................. GGCCTCGAGGGCCGGGAAGAAGCGGCGGTAG 11207 30 96.7 31 .............................G GGATGCGGCGCTGCTTGAGGTAGTTGAACAC 11146 30 100.0 31 .............................. GTTAGGGAAGGGGAAGGAGAAGGAGGGTCAC 11085 30 96.7 30 .............................G TCGGGCGCTGGCGGTCGAGGGCGACGAGGC 11025 30 90.0 31 ............CA...............T TCCCCATTTACTCCCCCTGTTGGCGGGCGGC 10964 30 90.0 31 ............CA...............T GGGGGGTGAGTAACGATGGCCCGTCCCGCCC 10903 30 90.0 31 ............CA...............A CCCCGCCGCGCTCGACGGGCTGGAAGGCGGG 10842 30 93.3 31 ............CA................ CCAAGTCCTTCGTCCGCACGGTGGCCGTCAC 10781 29 73.3 0 A..........AGAG.........-..TA. | ========== ====== ====== ====== ============================== =============================== ================== 14 30 94.5 31 GTTTTCCCCGCGTGCGCGGGGATGGACCGC # Left flank : CGCGCCGTCCTCACCGCCCCTGCCAAGCCCCTGGAGTCCGAGCGCTTCGCCGGGGCCGTGGACACCGTGGGCGGCGCGGTGCTCGCCGGCGTGCTGCCGCGCGTCGCCTACGGCGGCAGCGTGGCGGCCTGCGGCAACGCGGGCGGGGCCAAGCTCGAGACCACCGTCTTCCCCTTCCTCCTGCGCGGGGTCAACCTGCTGGGCGTGGAGTCGGTGATGTGCCCCCGCGAGCGCCGCCTGCGGGCCTGGGAGCGCCTGGCCCGGGACCTGCCCCTCAACCTCCTCGACGCCAGCGTCCAGACCGTGGACCTCGCCGCCGTGCCCGAGCTCGCCCAGCAGATCCTCGCCGGGCAGGTGCGCGGCCGCGTCGTGGTTGATCTGGGCGCCTGAAGCCCTGCTACGATAGCTCCAGGCAAGCCCGCTTGCCGAGGGGAACTTGAAAGCTGGGCTCGAGACACTTCCGGGGGCTCGAGGGGCAGTTTTGCTCGGTAGGACCAAGT # Right flank : GACTGTAGGGGGCGCAACGCGTTGCGCCCCCTACGCTGTTTTTAGGGTCTCTCGTTCAGATCGTGAAGCCCAGGGGGATCACCGTGACGCTGTCGCCCACCTTGGCGCTCGCGCCGGCCTCGAGCACCACCAGGGCGTTGCCCTCGACCATCGAGCGCAGCACGCCGCTCGACTGGTTGCCGGTGCTCTCGACGGTGAAGCCCTGGGGGGTCCAGCGCAGGACGCCCCGGCGGTAGACGCGCTTGGAGGGGTTGGCGCCGAAGGCGGTGGCGGCGGCGGCCTGCACCCCGGCGTAGGGGGGGTCGGTGCGGCCGAGCAGCTTGAACAGCAGCGGCCGTCCGAAGAGGTGGAAGACCACCATGCTCGAGACCGGGTTCCCCGGCAGCCCCAGCACCGGCAGCCCGCGGTAGTCGGCGAAGAGCACCGGCCCGCCGGGCTGCAGCTTGACCCGCCAGAAGTGGATGTTGCCCTCGCTCTCCAGCAGCCGCCGCACGAGGTCG # Questionable array : NO Score: 5.69 # Score Detail : 1:0, 2:3, 3:0, 4:0.81, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.62, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTCCCCGCGTGCGCGGGGATGGACCGC # Alternate repeat : GTTTTCCCCGCGCACGCGGGGATGGACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCGTGCGCGGGGATGGACCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [36.7-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.87 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 7705-7188 **** Predicted by CRISPRDetect 2.4 *** >NZ_QXDL01000031.1 Calidithermus terrae strain DSM 26712 contig_31, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 7704 29 100.0 32 ............................. AGGTAGACCGTGCCCCGGTCGAAGCCGTAGCG 7643 29 100.0 32 ............................. TCTAACTCGAGCTTGCTTATCATCGACCATCG 7582 29 100.0 31 ............................. ATCGAGCCGATGAACGCGGCGTTGCGGGAGC 7522 29 100.0 32 ............................. AGCTCCTGTACGTGGGGGAGGAGACCACAGAT 7461 29 100.0 32 ............................. CCCATCGCGCCGCCCACCAGTGCGGCGACGAG 7400 29 100.0 32 ............................. GCGTGGATGCGCTTGCCGTTGGAGAACTCCAC 7339 29 96.6 32 ............................C ACTACCTCTCCACCCGCAAGACCTACGCACTT 7278 29 100.0 32 ............................. GTCCGACAGATGAGGCGGGGTCGGACCGGCGC 7217 29 75.9 0 .C.......A.G....T........T.AA | A [7192] ========== ====== ====== ====== ============================= ================================ ================== 9 29 96.9 32 GTTTTCCCCGCACACGCGGGGATGAACCG # Left flank : AGCCGCTGTCCGAAACCGTCACCCTCCCCTTCCCGAGCGACTTCGAGCCCATCGGAAGGACGCTTCGGGAGGTTCTTGCTTCCAGGTGTGAGTAGTGGTGTTGTTTTGTGTGCTAAAGCGAGGCCTGCCCCCTCAAACCCCTACCCCCCCGTGCCAGTCTTGACGTCGTCGCCGTCCGCCACCACCGCGGGCGGCGTGGGCCCACCCGCCACGCCCCACGGCTGCGCCAGCGCGAGCAGCGCCAGCACAACGCCCAGGCAAACCCCTCCTTTCCCCAGTACCCGGAGCCACTTGCCGATACCACCCTTCGTGCGGAACGCATGGGTCTTTCCCATGGCCCGCAGGGTGCGCCCGGCACGCGACAGAACCTGTCGCACCAGAGGCACGCCCGAGAGTGCTAGGATGACCAAAGCAACCGGGCACGTTGCACGGCACCTTGACAGGCAGGCCTCGAGACACTTCCGGGGCTCGAGGGGGAGTTTTATCCGTTAGAACCAAGT # Right flank : AAATAGGGCGAGCCAGTGGCTCGCCCCTACGAAAGCGCTGGGCTTTAGGCGTTCGGCTATCAGCTATCGGCGTTGGGCGTTGGGCGTTCGGCGTCCGGCATTCGACACTCAGCTAACCGCCCGGAGCTACGCTCAATTCGCCCGCTGGCTCTCGAGCCCCATGCTGCGAACCTCGAACACCGGCACCTCGTGGTAAAGGGGCGGCGGGACCCCCTCCGTCTGGACGCGGCCCTCCTGGACGAGTTGCAGCAGAGCCTCGACCACCTGCGGGTCGAACTGGCTGCCCGCGTTGCGCTGGAGTTCGGCGAGCGCCTCGGGGACGGAGCTCGGCTCCCGGTAGGGGCGGCGGCTGGTGAGCACCTCGAAGACGTCGGCGACGGCGAGGATGCGGCCGAAGAGGGGGATGGCCTCCCCGGCCAGCCCCCGGGGGTAGCCCTTCCCGTCCCAGCGCTCGTGGTGCGCGCGCACCCCCTCGGCGATGGTGGCGAACTCGGGCGAGG # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTCCCCGCACACGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCACACGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 12240-12757 **** Predicted by CRISPRDetect 2.4 *** >NZ_QXDL01000036.1 Calidithermus terrae strain DSM 26712 contig_36, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 12240 29 100.0 33 ............................. AGATGGTCGAGTTCCACGCCCGGAGCCAACTGC 12302 29 100.0 32 ............................. ACCAACCAGAGCGTGTGGATTCAGGAGGGCGA 12363 29 100.0 32 ............................. ACGTTTCGGACGTGTTCGTTCACCTCGAGTAC 12424 29 100.0 32 ............................. GCCAGGAAGTCGCTGCCGGTGCGCTCGTAGCG 12485 29 100.0 32 ............................. CTCGAGCGGGTGGAGGCGGTGGTGGCCCAGCA 12546 29 96.6 32 .........G................... ACCCACGGGGCGTGCCCCCACACCAACAACCC 12607 29 93.1 32 .........G..................T CGACCAGCGGCCGCTGCTCGGCCGCGACCGCC 12668 29 93.1 32 .........G..................T CGACCAGCGGCCGCTGCTCGGCCGCGACCGCC 12729 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 9 29 98.1 32 GTTTTCCCCACACACGCGGGGATGAACCG # Left flank : GGCGAACTTGAGCGCAGCCTCTACGGCCTCGGTGCCCGAGTTGCCGAAGAACACCATCGAGAGGTCGCCGGGGGTGATCTCGGCCAGCCGGTGGGCCAGGCGGGCCGTGGGCTCGGAGACCATCACCCGCACCGACATGGGCATGCGGTCGAGCTGGGCCTTGACCGCCTCGACCACCCGGGGGTGCCGGTGCCCCAACGAGAGCGTGCCGTAGAGCCCCAGGAAGTCCAGGTACCGCTTGCCCTCGGTGTCCCACACGTAAACCCCTTCGGCGTGGGATTCCACCTTGTCGAGCCCGGTGAAGCGGAGCAGGCCCGCGAGCCCGGGGTTCACGTGCTTCTCGTACCAGTTGAAAGCTTCCATCAGGGCGATTCTAACACCGGGCCTCGAGCGCACCCCTGATGGCATAATGGCCTCAGGGTCCTGCCCGAACCGAACCTTGAAAACTCAGCCGACACTTCCGGGGGCTCGAGGGGCAGTTTGGCTCGGTGGGATCAAGT # Right flank : GTACACGCTTGGGGTGCATGTGGTCCTGGAATGCCGTAGGGGCGCAGCGCGCTGCGCCCCTACGCTCGTTTTACCGGGCTTGCAGGTTCACTCCGGCCAAAGACCCAGGCCCTCGCGCTCGACGTGGTAGCCGGCGGTCTCGAGGCGCTGCACCACCTCGCGGCCGTGCTCGTCGTCGCGCACCTCGAGCACCAGCTCCACGCCCACCTTGCCCAGCGGGGCCAGCCAGAGGGCGCGGCGGTGGAAGATGTCCACGACGTTGGCCCCGGCCTCGGCCACCTTCTCGATGATGCGGGCCAGGGCGCCGGGGCGGTCGATCAGGGAGAGCTTGAGCAGGAGGTAGCGGCCCTGGCGCACCAGCACCTGCTCGATGACGCGGGCCAGGAGGTTGCCGTCGATGTTGCCGCCGCACAGCACGGTGCAGACCACGTCGTCGGGGCGCACCGGGACTTTCCCGGCCAGCAGGGCGGCCATGCCCGCGGCGCCCGCGCCCTCGACCA # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTCCCCACACACGCGGGGATGAACCG # Alternate repeat : GTTTTCCCCGCACACGCGGGGATGAACC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCACACGCGGGGATGAACCG with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.00,-10.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [40.0-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 10094-11162 **** Predicted by CRISPRDetect 2.4 *** >NZ_QXDL01000082.1 Calidithermus terrae strain DSM 26712 contig_82, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 10094 29 100.0 32 ............................. ATGGATATCGCAAAGATCAAGAAGTCTCGTAG 10155 29 100.0 33 ............................. AGCGGGGTCGAACCACGGATTACGCAGCAAACC 10217 29 100.0 32 ............................. ACGGTCGCCCCCGCCCAGGTCACAACGACCTT 10278 29 100.0 32 ............................. GACCGAGCCCCACTCGCTATAGACCTATCCCT 10339 29 100.0 32 ............................. AGACGACGCCTACGGTCTGGCCTTCATCAAGG 10400 29 100.0 32 ............................. AAAGTGGCGGAACCCTCGACGCGGGCCACCCG 10461 29 100.0 32 ............................. GGCACGGTGGCGGTGGGCACGTTGAGGCCCGA 10522 29 100.0 32 ............................. GTGGACGTCGTCGCCGCCGGGCCGACCGGCAA 10583 29 100.0 32 ............................. ACCGCGAAGGAGTGGCTGGAGGAGTTTTTGGG 10644 29 100.0 32 ............................. TCGCAGGCCCGCAGCTCCCGCCACTCCACCCG 10705 29 100.0 33 ............................. CTGCCGGGAGGGCAGCTCCAGCGTGCTGAGGTC 10767 29 100.0 32 ............................. GCGGCCATCCGCCGGGCCCGCGAGCAGGAGCA 10828 29 100.0 32 ............................. CCCGCCACGGGAGGTGATCAGTAATGCCCCGG 10889 29 100.0 32 ............................. TTGGCGAAGATCTCGACGCCGTACTCGTTGTA 10950 29 100.0 33 ............................. CTCAGGCTCCACTCGGAGCCCTGCTCGATGTGC 11012 29 100.0 32 ............................. ATGCCCCTCCCGCCTGGTCACGGGAGGGGGTT 11073 29 100.0 32 ............................. ATGCCCCTCCCGCCTGGTCACGGGAGGGGGTT 11134 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================= ================== 18 29 99.8 32 GTTTTCCCCGCACACGCGGGGATGAACCG # Left flank : CCGCCGTGCTCATCGGGCTGCTGGGCTTCGCGGTCTACAGCGCGGTGGGCAACCTCGTAGCCTGGAACCTGCTGGGCCGGCTGCTCTTCCCCAACTGGCTGTGGGCCGCGCTCGCGCTGTGGCTGGGCCCCGCCGTGGCCGCGCTCAGCCTGGGCGTGACCGTGCTGGTCTCGGCCCGCGTGAACACCTTCCAGGAGGCCATGCAGCTCGGCGGGGTGATCGTGCTGCCGGTGGTGGCCCTGGTGATCGGGCAGGCCACCGGCGTGATGTACGTCAGCACCGGCCTAGTCCTGCTGCTGGGCTTGGCGGTCTGGGCCCTCAACGCCCTGGTGCTCACCCTGGCCTTCCGCCTGTTCCGCCGCGACAACCTGGCCTCGAGGCTGTGAGCGCCCGCCCGGTGCTAGGATGGGTCCATCGACCCTAGGGGTTGGTGATCCTTGAAAACCGGCTCGAGACACTTCGGGGGGCTCGAGGGGCAGTTTTTCTCGGTAGAACCAAGT # Right flank : AGTGCTGTAAGGTTCGTAAGGTTCGGCACGGTTGGCTACTGCGGAGGCACAAAAACCCCTCGAGGTGCCCTGTGGATGTTCCTCGAGGAGAGGGTTGGTCTAAGGCTATAGCACAGCCCGCACTAACTGCTTGTGCCAGGCAGGGTCCGCCTCCTGCAGCAGCCAGTCGCGAGCGCCAGGGGCGTCGCCGCCCGCGGCCACAGCTTCACGGTTGATCCGGCGGTACTCGGCTAGCGTCCATCGACCCGAGGCCTTGAGCTGCTCGACCTCTACGGCGAGCTGGCGCATCCGGAACCAATTGATTTTGGTCGGCGTAGCGGCCATGTCAATCCCTCGCACCGATCATCCGGCGAACCTTTCCCCTGACGCAGCTATCCGCCACCAGTTGTCAGCGTCTTGCGTCTTGCGTCTTGCGTTTTGCGTACGGCGTAGGACGTACGACGTACGACCCGCGTTCACCCCTTAAATCACCAGCGCCAGCGGCCTCTCCAACTCCCCGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTCCCCGCACACGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCACACGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [43.3-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 17632-7536 **** Predicted by CRISPRDetect 2.4 *** >NZ_QXDL01000018.1 Calidithermus terrae strain DSM 26712 contig_18, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 17631 37 100.0 36 ..................................... TGCGCCCTCGCGCGTTGGGGGAACGGCCCGGTGCGC 17558 37 100.0 34 ..................................... CTCAGCAGCCAATAGCTCGAGGTACTGGATGGTG 17487 37 100.0 33 ..................................... AAGGGCCGGGGCATCGCCGACCCCGACGCCGCC 17417 37 100.0 36 ..................................... CTCCTGCTTCTTGGCAGTCTCCAGCGTGATGAGGTC 17344 37 100.0 32 ..................................... TAGCCTCATGCCCCCACCTCCCCCCAACCCCG 17275 37 100.0 36 ..................................... CAGTCCGCCACCCTCAGCCTCAGCAGCACCGACCTC 17202 37 100.0 34 ..................................... GCAACAGCCTCCAGTTTGGGCTTCCCGTAGCGCT 17131 37 100.0 34 ..................................... GACGTGTTCCGCCTGCTCGAGCACGGCGGCGACT 17060 37 100.0 33 ..................................... CCGGCCTTCGACGTCATCATCCCCGACACGGTG 16990 37 100.0 36 ..................................... TCTATTGCAAGAAGTCATTGAGTTTGTTGGACGCGG 16917 37 100.0 35 ..................................... CGTTTGCGCCCCTCGTGCTCGCCCTGGCCCTTGAA 16845 37 100.0 34 ..................................... AGCTTGGGTCATGGTTCCCCCTCAGAGCCCGCAC 16774 37 100.0 35 ..................................... CTCCGTCTCGTCGTAGTGGCGTAGCTGGACGCTCG 16702 37 100.0 35 ..................................... TTCGCCCCCAACCCCAGCACCACGCTCGGAACGGG 16630 37 100.0 34 ..................................... AAGAACGGGGCCTGGAACCCCCTGAGCGCCCGCC 16559 37 100.0 38 ..................................... GGCCAAGGAGATCGTGGCGGTGCCGATCCTCACCACGG 16484 37 100.0 34 ..................................... CCTTTCGAGATTTTGCCGTCCTGCACGATTCAAA 16413 37 100.0 35 ..................................... GCCGTCGAGCGCACCGTGCGCCAGGGCGTGGCCTC 16341 37 100.0 34 ..................................... TTCCAGTGGCTGAGGATCAGCTCGAGCGCCTGTT 16270 37 100.0 34 ..................................... AGCCAGGCATTCAGTGCAGTCCGGCAATTCGTAG 16199 37 100.0 35 ..................................... CCCCACCGGTCTCCTCGACGAAGGTCAGGCTGGTG 16127 37 100.0 34 ..................................... TAGGGGCCTTACAGCGCCTCACAACCCCCTCGTC 16056 37 100.0 34 ..................................... CCGGGGATGCTCGAGGCCGCCCTGAGCCGGCCCG 15985 37 100.0 35 ..................................... ATGAGAGATACCCGCTACGTCTACGGGGCCACCTG 15913 37 100.0 36 ..................................... CTGGCGGTCTGCCCGAACGTGGGGTCCTCGATCTTC 15840 37 100.0 33 ..................................... GTGTAGGGGGCCAGATAGGTCTCGGCCTCGGGG 15770 37 100.0 34 ..................................... TCGTGATGGGAAGAGCGTGGTGCGTTGGCGCGAC 15699 37 100.0 35 ..................................... GAGGCCCGCTGCGAGCTGCGCGGGCTCAAGCGGGC 15627 37 100.0 34 ..................................... TCCCTATCGGCTTTTTTCTTGGTGCCAAGGGGCG 15556 37 100.0 33 ..................................... AGCGGTGAGGGTGACGAAAACGAAACTGCCGTC 15486 37 100.0 35 ..................................... CCCTCCACCCCGCGAATGTACAGCTCCGGCAGGGG 15414 37 100.0 34 ..................................... TTCAGCCAGGAGAAGGACGATGAACGGTAAAAAC 15343 37 100.0 33 ..................................... CAGACGAACACCAGCAGATCACCCATTCCTCCG 15273 37 100.0 33 ..................................... TGGCGCGAGCGCAGGCCGCTCGTGCTCGCCTGC 15203 37 100.0 36 ..................................... CCATCGAGGAGAAGCCCTGGCAGATCGGTCTCATCG 15130 37 100.0 31 ..................................... TTGTGGCACTCTGTGCTTGCACAACACCTCC 15062 37 100.0 35 ..................................... GCGCTGCTGACGGAGACCGGGCCGGACGCCCTGCG 14990 37 100.0 32 ..................................... CGCAGTTCCGTGATCTGGGCGCGCAGGGCGAG 14921 37 100.0 32 ..................................... CAGAAGCCGCAGGCCACCTGCCGCAGGGCGCT 14852 37 100.0 33 ..................................... GATGTCCATATCCCCTCCACGACCAGCGTAGCC 14782 37 100.0 39 ..................................... GTTAGCCCCAGCATCTGGCTGGGGCGGCAGCCGTAGCGC 14706 37 100.0 35 ..................................... GGGACAGGGGGGGCTCGAGGCGTCCCGGTTTCGGG 14634 37 100.0 34 ..................................... CCCCCGGCGCGGTGGGCATCCTGATCCAGACCCG 14563 37 100.0 37 ..................................... ACCTGGGGCGAGATCCACGACAAGGCGGTGCAGGAGG 14489 37 100.0 34 ..................................... CTCTTCCTGGCCGACGGGGTGGTCAGGACCACGC 14418 37 100.0 35 ..................................... GGCGATCAACCCTCAACGCTCGACCCTCGACCCTC 14346 37 100.0 34 ..................................... CACCCCGCGCACGCTGGCTTTGTAGATGGCGGTG 14275 37 100.0 34 ..................................... ACCGGGCTGATGTGGTGGGTGGCGGCCGCCGTGG 14204 37 100.0 35 ..................................... CAAGCCGGGGCCCAAGCCTACGGGCCGGACCAAAC 14132 37 100.0 35 ..................................... CAGTTCGGCAAGCCGGGGGGCGAGAACAGCTCGGT 14060 37 100.0 35 ..................................... CGCCAGACCGCCGTCAACTTCACCCTCGACTCGGG 13988 37 100.0 35 ..................................... TCCTCGGCCCGCCTCAGGGCGGGGGCGGCCAGCTC 13916 37 100.0 34 ..................................... TCGCGCTCGTAGAACTCCAGGAGCCCTGGGCCCT 13845 37 100.0 36 ..................................... GTGGCGCCTGGGCCGCGCCCCTGAGCTCGAGGTCAT 13772 37 100.0 36 ..................................... AAGGCGTACCGCCGCTGAGGCGGGCGCGGGAGGGGG 13699 37 100.0 37 ..................................... CCGGGTGCTCACCCTCGAGGACTTCCGGGCCGGGCGG 13625 37 100.0 36 ..................................... ACCGCCCAGGCGGGCTATACCTCGAACTCGGGGTCG 13552 37 100.0 35 ..................................... GCAAGCTCGCCAGCCTGCCCACCGACCTGCCCGAC 13480 37 100.0 35 ..................................... AACTTGTACATAACTGTTATCCGGAACTCGTATTG 13408 37 100.0 34 ..................................... AACTCGGCGGGCGGCGGGGGGCTGGTCTACCACG 13337 37 100.0 37 ..................................... GCCCTCAGCCCCCAGGCGCGGGCCCTGCTCGAGGCCG 13263 37 100.0 35 ..................................... CTGGGCCTCAGCGGCATCACCGGCTACCCGACGCC 13191 37 100.0 35 ..................................... TCCCAGTCGTTGATGAGCAGCTGGCGCACCTGCTG 13119 37 100.0 35 ..................................... TACACCGACCACCTGGGGCAGAAGGCCCTGCCGGC 13047 37 100.0 34 ..................................... AGCGCCCGCCACGGTTGTGCCCCACGGCGCGGTT 12976 37 100.0 33 ..................................... TCCGGCGGCAGCGTCGCGAGCAGGAAGTCGCGG 12906 37 100.0 35 ..................................... TGCACCGGCGGCACCTGGTGCGGCAGCAGCTCAGT 12834 37 100.0 35 ..................................... ACATAGACACTCACGGGATTTGCTCGAGGGTGGAG 12762 37 100.0 33 ..................................... CCTTCCGGCACCTCCACCCCCTCGCCCTGGAAG 12692 37 100.0 36 ..................................... GGCTATGATTTTTGGGCCGCTGAAGAAATCCCTGGA 12619 37 100.0 37 ..................................... TTAAAAATTGGCCCGAAGCGGGCGGATGGGTACGGGA 12545 37 100.0 36 ..................................... TTGTTCCCCTCGACGTACTCGGTCAGGGGCGCGTGG 12472 37 100.0 36 ..................................... CTCGCTCAGGCCCACCAGCTTCGCGACCTGGAGGTC 12399 37 100.0 33 ..................................... ACGTGTTGCCGAACTATGCTACCATTGCATCCT 12329 37 100.0 38 ..................................... GCCGTAGGTGGCGGGATTATCAGGGAAGCGGGCAGTAG 12254 37 100.0 36 ..................................... GAGCAGCGGCTCCGGCGGGAATGGCTGGCGCGGGAG 12181 37 100.0 37 ..................................... CTTTCTCCCGATGGCCCGGTAGCGCTTGAGCCACTCC 12107 37 100.0 35 ..................................... TGACCGGGGCAAGGACTTTGAACCTTGCCCTTGAG 12035 37 100.0 35 ..................................... TCACTCGTGGACGTGAGTTCGGAATCGGCGCAACA 11963 37 100.0 36 ..................................... CTGATCCTGCTGATGGTTGTCGCAAAGCGTTGGGGG 11890 37 100.0 36 ..................................... CAGTCGAGTTGCGCAATGTAGCGCTGGGTTTGATTT 11817 37 100.0 36 ..................................... TGGCGGGCACGCCCCGGGATGGGGATGGGACTCATC 11744 37 100.0 34 ..................................... TTATGGCCCGACCTCTCGCCCGCAGCGCGCAAGG 11673 37 100.0 36 ..................................... TGGCTGGCCTACGCCCTGGCGCTGGCCCTGGCCCTG 11600 37 100.0 36 ..................................... CGCTGAACATGGTGGGCATCCACGACGCCGCTGATT 11527 37 100.0 36 ..................................... TTCCGCCAACGGCGCGCCCCTCGCCACCTCATCCAC 11454 37 100.0 35 ..................................... GCCGGGGTGACCGAGATGGGAACGATAAACCGCTG 11382 37 100.0 35 ..................................... GTCCTGGTGGGGACGGTCCGGGACGACCGTGGCCG 11310 37 100.0 35 ..................................... TTACCACGCGCGCGCGTATGCCCACGCGTGCGTAT 11238 37 100.0 34 ..................................... TTCTGGACAGGCAGTCGTGGGCGCGGCTCTGCGC 11167 37 100.0 31 ..................................... CGTATCTGCCCCCCTGTGTACTCTTACGTAT 11099 37 100.0 33 ..................................... TTAATGGTGAGCGGGTAGTGTTGGCCGAGGGAC 11029 37 100.0 34 ..................................... ATCCAGAGCGTGCTGCTCCCGGCCATGCGCGGGG 10958 37 100.0 35 ..................................... ACATAGACACTCACGGGATTCGCTCGAAGGTGCAG 10886 37 100.0 32 ..................................... GCGCCGACCTACAAGCTGCTCATGGAAGCCTG 10817 37 100.0 34 ..................................... GCGTTGGGCGGGCAAAGGAAAATCCCCCTCGAGG 10746 37 100.0 37 ..................................... AAACACGTCGCCCGCACCCAAATCCCCAAGACCCGGC 10672 37 100.0 34 ..................................... TCGTGCACCGGGCGGGGGAGGTGCCGTGACGCCC 10601 37 100.0 31 ..................................... CTCGCGCAAATCCTCCACGAGTCGGGGGGAC 10533 37 100.0 38 ..................................... ACGAGTTTATCCACAGCGCGTAACGTTAAAAACGGAGG 10458 37 100.0 34 ..................................... ACAGAAGGCAGGGGGTCGGGAAGCCTCGCTCGTC 10387 37 100.0 35 ..................................... TTCTTGCCGTCTGCTTGGATCCAGCACCATTTCTC 10315 37 100.0 34 ..................................... CACGAGGAGCGCGGGCGGTGGCCCGCCGTGGGGG 10244 37 100.0 36 ..................................... TGCCGCTTAGTGAGCGGATTCGGCAGGCGAATATTG 10171 37 100.0 37 ..................................... CTCCGTTACGCTTGTTACGCTACGAGACTCTGGATAA 10097 37 100.0 34 ..................................... TGGTCCATCGGCGTCGCGCGCACCACGATGCCGC 10026 37 100.0 33 ..................................... GCCGCCCTTCACCGAATGGATAGTCCCCACCAC 9956 37 100.0 36 ..................................... CCCAAGCGGGTGGGGAGCGACCTGAAGGCCTGGACC 9883 37 100.0 36 ..................................... GACCGCCCTGAGGAGGCCGAGGCTGCGCGTCAGCAG 9810 37 100.0 34 ..................................... ACAGGGGGACTACGCCCGTGCCCTCGAGGACACC 9739 37 100.0 34 ..................................... ATCGGCCAGGGGGTCGGAGCCGTGGTGGGAGTAG 9668 37 100.0 34 ..................................... GATTCTAAAAATGGTGCCTCTGCTCGAGCGTTAC 9597 37 100.0 36 ..................................... CATGATGCTTAGCAGCGAGCTCGCCGAAACTCGCCC 9524 37 100.0 32 ..................................... CCCAGCTCGTAGCGCTGCTGGAGCACGCGAAG 9455 37 100.0 38 ..................................... TTCCGGGTGGATCGCCACCCGGCTCCCCACCGAGGGGG 9380 37 100.0 34 ..................................... CTTCCCCGCCCCCGGCGACTACCTGCTGCAGCTG 9309 37 100.0 37 ..................................... TTGGCCTAGCCGGAGCAGTAGTCGGATTCCTGGTTGG 9235 37 100.0 36 ..................................... GTATCCTGCGATATAGATTGCAGGCAAGGCCTCTAG 9162 37 100.0 38 ..................................... TGGTTTCGAACCAGAACACGGGGTAGATGATGATGCAA 9087 37 100.0 35 ..................................... TCCAGCGCCGCCGCCATGCGGTCGAAGGCGGACTG 9015 37 100.0 33 ..................................... TGCTTGGTGGTCTGGCTGATGTTGAGGGTGGCG 8945 37 100.0 37 ..................................... CCGTCCTGCTGGTGGGTAGGCCGCCGGCGGTCGAAGT 8871 37 100.0 36 ..................................... CCCGAATCCGTCGCGGCGGCGCTGGCCTCGCGCGAG 8798 37 100.0 35 ..................................... TGCGGCTCACCGAGGCCGCCACCCGCATCCTCCAG 8726 37 100.0 35 ..................................... CCTTATCTGGCAGCAATGTAGCCGCCCCCCGGGGC 8654 37 100.0 38 ..................................... AACCGGGAACTCCATTACGTATCCGGTGGCGTCAACTA 8579 37 100.0 34 ..................................... ATCCGGACCCCCTCACGTCGCCCTCCAGGAAAGC 8508 37 100.0 33 ..................................... TTCCCCGCCCCCGGCGACTACCTGCTGCAGCTG 8438 37 100.0 34 ..................................... CGCCACCACCCGGGCCGCCTCGGGGATGAGCGGT 8367 37 100.0 36 ..................................... AGGCCATCCACGCCTTCCCCGGCAACCACGACGCCC 8294 37 100.0 31 ..................................... ATCTATCTGTATCGTCTGCGCTCGACCGCGA 8226 37 100.0 34 ..................................... TGCTGAGGCTTGGCCTTGGGGTGGATGATCTTGA 8155 37 100.0 37 ..................................... CGGGGGCGCAGTGGGTGACGTAATGGCGGGAGCCCTG 8081 37 100.0 34 ..................................... GCCGACGCCGCCGTGCTCATCCGTGTCGACGGGC 8010 37 100.0 34 ..................................... TACGACCACCGCGACGTGACCCTGACGGTCCCCG 7939 37 100.0 39 ..................................... CCCCCGTTGCCGATCAGCTCGGCGTTGAGGATCTTGCGG 7863 37 100.0 36 ..................................... TTTCAAGATGGAGTTCAACCAGGCGCGGCCCTGACC 7790 37 100.0 35 ..................................... CGGGGAGGTACAGCGCGTTCTGAGCCGGGGGGCGG 7718 37 100.0 37 ..................................... CTGCTGACCAACGAGGAGGCCAACTGGGGCACCGTGC 7644 37 100.0 35 ..................................... ACCGTCTACCTCGACCCCGCCGAGCGGGAGGAGGT 7572 37 97.3 0 .................T................... | ========== ====== ====== ====== ===================================== ======================================= ================== 141 37 100.0 35 GTTGCAGTGGGCAATTAAGCCCACTGAGGATTGAAAC # Left flank : TGGGCAAGTAGGAGTGCACCGATGGAACGGCTCGACATCCTGGTCACCTACGACGTCAACACCGTCTCGGAGGAGGGCAAAGCGCGGCTGGCCCGGGTGGCTAAGGTTTGCAAGAACTACGGCCAGCGCGTCCAGATGTCGGTGTTCGAGTGCCGCGTCACCCGGGCCCAGCTCGAGGAGCTCGAGGCCAAGCTGCTCAAGGTGATCGAGCCCGACAAGGACAGCCTCCGCATCTACACCCTCCCAGGAGGGCGTGAAAAATGCTTGAGAACACACGGGCAAGACCGGTATCAGGACTTCGATGACCCCCTAGTCCTTTAGCGCGAACCCCTAGTAGGTGCGAAAACCCGGGAGGTTCGCGCAAAGCCATTTTGCGGCTTGGGTACTTTGAAAGCTTGGCTATACTGGGAACCACCTCGCACCGCGGAGGTGGCCTCAGCCCCCAGGTTCGCGCGGTACTGGCTATCAATGCAGTCCTGCACGTATGGGTTTTTGAGGCC # Right flank : GTGCAGCGACACGGTGACGCCCGAGCTGTTGCCGTTGCAGTGGGCAATTAAGCCCTCCTTCTGGCTGGGATTAAGACAGATAGCCAAGCTTTAGAACTCCTCTCCTTTACACTCGAGCCATGCCTCCCTCCCACGATGAGGCAAAAGCCTTGCTTGTCCGGCTGCGTTCAGGCGACCCGACCGCGCCTTCAGATTTAGTCGTGGCTTACCTGGAAGATCTTGCCCGCTGGCTTCAAGGCCGGAACCCAGCCGTAAGTGATGAAGACTGCCTTACTGCTGCCGAGGATGCTTTGCTGGCTTTGATTAAGAACCCTACTAGCTACGACCCGAAGCGAGCCTCGCTCCTGGGATACCTTCGAATGTCCGCTTCTGGCGACCTCAAGAACCGGTGGAGGGCAGAGCAACGGCATGTTTGGCGCAGGACCGGCCTCGAGGATGTCGAACTTTCTCCGGGAGAGGGGAAATACCTTAGGGATGGGGAGGCTGACCCGGCCCAGCGC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAGTGGGCAATTAAGCCCACTGAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.35%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-13.20,-12.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [38.3-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.91 Confidence: HIGH] # Array family : NA // Array 2 28679-33283 **** Predicted by CRISPRDetect 2.4 *** >NZ_QXDL01000018.1 Calidithermus terrae strain DSM 26712 contig_18, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 28679 37 100.0 33 ..................................... AAGGTGTCGATGCACCACGACTGGTACGAGGGG 28749 37 100.0 34 ..................................... GCCAATGCCCGGCTCCCACTCCGCCCAGCGCGGC 28820 37 100.0 36 ..................................... CCCTCCCGCTCCTTCCGCATCTGCCGCGCCTCCCGG 28893 37 100.0 32 ..................................... TCACCATCTGAAGTAGGCGACTTACTGGACCG 28962 37 100.0 33 ..................................... CAGAACAAACAGACAATTTCATCTATTATCGCC 29032 37 100.0 36 ..................................... CTTCTGGTCCGCCGATCTGGGCGAGGACGCCAGCGC 29105 37 100.0 33 ..................................... ATCGGTGAACGCCGTCTCGGCCAGCACCGTGGC 29175 37 100.0 35 ..................................... GCGGACACCCAGTGGGAGCCTCAGGCGGTGTATGC 29247 37 100.0 37 ..................................... CAGGGGATATAGCGGTGCTCGCCCTCGATGATCACGC 29321 37 100.0 36 ..................................... CTCGTTGGCCCGCACCAGCCGGGCGTTCAGCTCCAT 29394 37 100.0 34 ..................................... GTCGGCAGCGCCCCGTCCCCGTCGTGCCCGTTGC 29465 37 100.0 36 ..................................... AGGAACACGGCGGGGTGGTGAGAGGGCCGGTGTAGC 29538 37 100.0 35 ..................................... GGGCAGACCGCCAGGAACGCCCGAGACGAGATCAT 29610 37 100.0 36 ..................................... GTTGCGGTGACGTGTCATTACGACGTGGAGGAGTGG 29683 37 100.0 37 ..................................... CTGATCCCCTGGGCGACCGCCGAGGAACTGATCCGTG 29757 37 100.0 34 ..................................... ACCGACGAGGAGCTGGCCGATCTGCTGCGTCTGG 29828 37 100.0 34 ..................................... AACGGCATCGCCCAGGGGGAGATGGTCACCGCCA 29899 37 100.0 36 ..................................... TGACCGATCACTTCGAAATGTCTCGTCATGCCGTAT 29972 37 100.0 36 ..................................... TCCTTGCGGCGCAGCGCGTCGTAGATGCGCCCTTCG 30045 37 100.0 34 ..................................... CCCGACCAGCTCCCGGCGGTGCTGTGGGAGGTGG 30116 37 100.0 36 ..................................... GAGTGGGAGGCCTATGTGGACGCCGAGAACTCTTTC 30189 37 100.0 32 ..................................... AGCGTGACCCGCGCGGGCGGGGCGCAGACCCG 30258 37 100.0 36 ..................................... TGGGCTTTCGCGCGCAACCACCTCGAGTACTCCGAG 30331 37 100.0 37 ..................................... TGCTCGTGTTGCTCGGCGTTTTCGTGGTGTCTTGTTT 30405 37 100.0 37 ..................................... TCGTGTGTACTATCAGCTTCAGCGGGGTAAAGGCCAT 30479 37 100.0 34 ..................................... TTTAACCGGCGCTATCGTCGCCAATGATTTTGCG 30550 37 100.0 35 ..................................... GGCGTCGTACACGGTATAACTCCTGGGTGAAGCCG 30622 37 100.0 34 ..................................... AGGTTCCTTGAACGCCAGATAGAGCAGGGTCGAC 30693 37 100.0 31 ..................................... TTGAGCCGACGCGGCCGGCACCAGCAGAAGC 30761 37 100.0 34 ..................................... CCTTTCTGCCGCCCGCTTTTGGCCTGAGAACCGG 30832 37 100.0 35 ..................................... TTCCAGACCGCGGAGGAGCGCCGAGGTGAGTCGGC 30904 37 100.0 33 ..................................... TCGAGCACCACCCCCACCACCGTGCACCGGCAG 30974 37 100.0 35 ..................................... CCCACCATGACCCCCGCACCCATGCGGTGGACCCG 31046 37 100.0 34 ..................................... TACTTCTACGCCCTGGAGCAGGAGCTTTTTGCCC 31117 37 100.0 34 ..................................... TGTATGATATTGCAAAAAGGGCAATAGACCTAGG 31188 37 100.0 34 ..................................... AAAAGGCCCAGGAGGAGGAACAGTGGGTCTCCAT 31259 37 100.0 34 ..................................... CAGCTAGTCGGACCAGGAGGAAGACACCAGGAGG 31330 37 100.0 34 ..................................... ACCCCAAAACACGGTGTTGCCGCTCGTTACGTAT 31401 37 100.0 34 ..................................... CCCTTGCTCGGGCCCGTTTTCCGCCAGCTTGGAC 31472 37 100.0 36 ..................................... GCCAAGACCTACTTCACCGGCGGCTCCACCGCCAGC 31545 37 100.0 32 ..................................... GCCAACAGGATGCTGCGTCCAAATGGGGCATC 31614 37 100.0 38 ..................................... GGTACAGAAGGCCCTCGACGCCAAGGACGCCGAGGCCT 31689 37 100.0 37 ..................................... CGCACGTGCCGTACGGATTTGATCGCACGGCGCAGGG 31763 37 100.0 37 ..................................... CGGGGTAGCGGGCGGTCGCCAGCGCGACCCACTGGAA 31837 37 100.0 34 ..................................... TGCATCGGATTTTGGAAGACCGTCAAGCAATCGT 31908 37 100.0 35 ..................................... GTCGAGATCGACCCCTACTGCCAGCGTGTACTCAG 31980 37 100.0 32 ..................................... TACTACGCCCGGGAGGACACGAAGACGGTTTT 32049 37 100.0 32 ..................................... ACCGTCACGGTGCCCCACGGCGCGGTGACGAC 32118 37 100.0 34 ..................................... GCGGGGACGGGCGGGGAGCCCATCCCCGCCACCC 32189 37 100.0 33 ..................................... GCCAGCCCGTAGAGCCGGGCCATCACCGGGGCC 32259 37 100.0 36 ..................................... CCCCTGTGCCTCGGGCGAATCCCATCACGATGCCCG 32332 37 100.0 32 ..................................... TTGGGGGCCTTCGAGGGCTATTTCTTCCGCGA 32401 37 100.0 34 ..................................... ATCGGAGGCTGGGGAAGGCCTCGGGGTCGTAGCG 32472 37 100.0 34 ..................................... ATCGGAGGCTGGGGAAGGGCTCGGGGTCGTAGCG 32543 37 100.0 34 ..................................... CCCTCAGGCGGGGTGTATGGGTTCAGTGTATCTC 32614 37 100.0 34 ..................................... CAGCCGCATCGACATCGCGCCCACCGTAGCCCAG 32685 37 100.0 31 ..................................... AGGAGGGCGGGGTGACCCTCCTCCGCCTCAG 32753 37 100.0 34 ..................................... AGATAGCATGGAGTATGGATATTTAGCAGCACAG 32824 37 100.0 34 ..................................... TGCTTTTATCGGGCCGCACTGGATGCTCAGTGAG 32895 37 100.0 36 ..................................... GCTCGAGGTCGAGGTCGAGGTGCTCGACCCCGAGAC 32968 37 100.0 34 ..................................... CTGCCGCCGCACGCCCTGCCAGGAAAGGATGCGC 33039 37 100.0 31 ..................................... GTCTGGGGCTGGCCTAGCCTCCGGCGCTGCA 33107 37 100.0 33 ..................................... TCGTTCACGGGAGGATCCCCCTTTCGGTGGGTG 33177 37 100.0 36 ..................................... CGGTTGTGCAGGCTGTTGCGGCTGGTGAAGCGCAGC 33250 34 81.1 0 ........GA........T..C.......---..... | ========== ====== ====== ====== ===================================== ====================================== ================== 65 37 99.7 34 GTTGCAGTAGGCTTAAATGCCTACTGAGGATTGAAAC # Left flank : TTTACAAACCTTAGGGGAGGCACGCGGCCTCCCCTAACCCAAATTCCTCTAACCGCCCGTACCGATCTTAGGGTCATCGCCATCGGCGATCACCTGGGGGTGGCTTCCTACGGGCTGGAGCGGGGTCAACAGCGAGCCCGCCGACAGGAAAAGCACCAGAAGGAAACCCAGACCTCCTTTCACGAGAAGAGAGCGCTTAATGCCGAGGTTGCCAACCGTTCGGGTGAGGTATTTGTCTCTCACGCCGGACAGGGTCGGGCCGAGGCGCGCATGATCTTTGCGCGGTGCTCCAGGTCGGCCGACTTCATCTGCACCGCCAGCGCGAACCCCAAGCAAGAGCAAAAACACCAGGGGGTTCGCGCAAGCCGAATTCAGCCCTTCAGGACGCCATAAACCGAGCAAGCAGCTTGAGCCTAGTACTGTCGCTGGCTACCCTTCACAACAGGGTTCGCGCGCCGAAACCTAGCTATCCGCTTCACGACGCTGCTAAAATGGACCCC # Right flank : CTCGGGGGCTGAAACCAGTCATCCTCAAGGTATACTTCGGTTATCCCACACAGCGTCAGCGTTCCTCCCGCTTCAACCCTTCTGAAGCGGGAGGAACTTGCAACGAAAAAAGCTCAACAGGAGGAAATGTGAACGAACGCGATACGGGCAACACTGCCGCCTTCGGCCACCTCTGCCCGGGGTCTCCCCCACCCCGGCGTAGGCGGCTCGAGCCCGGCCAGCGTGAGAGGGGGCAGAAATGCTGAGCGAACGCTTCAAAGACGCCCTGGGCCTGGCCTTCGAGCTCCACATGGGCCAGAGGCGCAAGGGCACCGACGTCCCGTACCTCGCGCACCTCCTGGCCGTGAGCGCGATCGTCCTGGAGCACGGCGGGGGCGAGGACGAGGCCATCGCCGCCCTGCTGCACGACGCCGCCGAGGACCAGGGCGGCAGGGAGACCCTCGAGCGCATCCGCCGGCGGTTCGGGGAGCGGGTGGCGGCCGTCGTGGAGGGCTGCACCG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:0, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAGTAGGCTTAAATGCCTACTGAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.76%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-11.40,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [41.7-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : NA //