Array 1 88438-89051 **** Predicted by CRISPRDetect 2.4 *** >NZ_FOZX01000011.1 Saccharopolyspora flava strain DSM 44771, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ======================================== ================== 88438 35 94.3 39 .........G...........T............. GATGACACAGGACAACGGAGATCAGGCTCGACGGCTTCC 88512 35 77.1 30 .............A.......T....G.T.C.CTA CCACCGGTGGGAGCCGATGGCGACGATCCT A [88535] 88578 35 91.4 36 ......................C.........CG. CGGCTTCGTGATCTACGGTTTTCCCGACGAGCTGGA 88649 35 91.4 37 .....................GAT........... GTGAAGTCATTCGGTTTCGGGTCACCCCGGAGGTGGA 88721 35 100.0 40 ................................... GCACCGCAGGCCTGGTCTACGCCGCACCGGGCGGCGCCCA 88796 35 100.0 39 ................................... GAGACCTCAACCGGGAGAGAGAAAGAGGGAAACCATGAT 88870 35 94.3 40 .GT................................ GCTGAAACCGCCTCTGCCGGTCAGCACGACAGCAGCTCGG 88945 35 100.0 37 ................................... GACACGTGAGCCTTGTCTACGCCATCACCGCGAACGC 89017 35 94.3 0 .....................GA............ | ========== ====== ====== ====== =================================== ======================================== ================== 9 35 93.6 37 GTGGCAATGAGGACCGGCCGGAGCGGCCGGTGACG # Left flank : TGGAACTACTCAAGAAAGTCCTGCACACCACAGCGTTTCGGCTCGAAATCCCAGGCGCCACCCTCCGACTGAAGCCGCAACCGTCCACAACGGCCACCGAGTGGACCACCCCGTCGCGCACGTGGACCACGGTCACCCCCATCGTCCTCGACCGGTTCCCGGGCAAGGGCAACGAATCCGCAGAACTCGCCCGAGCCTGCCGCACAGCAGGCCTGCCCGAACCCACCGAGATCCGCACGGCCCGGAGCCCCTTCACCACAGCGGCAACAGACCTCGCCCCCGCAGACCTACCCCGAAAAACCCGGCTTCCATACACCCACGCCCACATCACCTTCCCAGACGCGATCCCGGGCCCGGTGGTCCTCGGCTCCCAACGCTATTTGGGCATGGGCCTGTTCCGACCTGCTGCGACTACCGTGTAAGCCCAGACGCAATGGGCCTGTCGGAACGGCCGGTGACGGCGGCGGGTTTGACCTGCTGCACGTGCTGACCGGCCACGT # Right flank : GGGGCTGTCCGAATGCGGTGGGTCTGACCTGGGTTTTCAAAGATCAAGGCGAGCGACCCCTCGTGGAGATCGCCACCGGAGCCAGATTCGATCTTAGCGTACCCAACAAAACAGGATGACCTGCGGAAACGCCATGCGAGCGGCCCTGCCTGGCACCATCGCCGCTGGACCGCTCGCATCGCGATATCGCTGTCACCTCCTGCGCACTCCAGCGACAGGAGTGCCCCTACTCCCGCCGCCGGAGCCCGACGGCGACCCGAGGGCCGTACGTCACCGGCACGTCCACGGACTCGCAGAACCGAACCCCCTCCCGAACGTCCTCAGCCCCGACTTCGCCGTCCTCCTGGTCGAGCACGTTCACCCCGCTCAACTCGGGTGCTTCAACGCCGAGCAGTTCGAACCTCTCAACGCGGTCACCGACGAGCCCGCCGACGCGCTCATCGTCGTCGGTCCCCTCGGCCAGGGGAGCCGCGTCGCGCACGGCCGCGACGAACGACGCC # Questionable array : NO Score: 2.53 # Score Detail : 1:0, 2:0, 3:0, 4:0.68, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.59, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGCAATGAGGACCGGCCGGAGCGGCCGGTGACG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-13.80,-13.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [14-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [30.0-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.74,0.68 Confidence: LOW] # Array family : NA // Array 2 108097-107267 **** Predicted by CRISPRDetect 2.4 *** >NZ_FOZX01000011.1 Saccharopolyspora flava strain DSM 44771, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================= ================== 108096 36 88.9 34 ..T....C.G........................G. TGGACCCGCTGCGGTCCGAGCTGACCGCTGCGCG 108026 36 91.7 36 .....T..............AC.............. GCTGGAATTGACGATTAGCCTGATGTGGCGGTTGTG 107954 36 91.7 37 ....................AC.........T.... ATCTGGCCACCGCGGTGGAGCGCCTCCTCGACGACAT 107881 36 97.2 34 ..................................G. TGGACCCGCTGCGGTCCGAGCTGACCGCTGCGCG 107811 36 91.7 36 .....T..............AC.............. GCTGGAATTGACGATTAGCCTGTTGTGTGGGTTGTG 107739 36 97.2 37 .....................C.............. TCTGGGCCGAAGCCGCGGGCACCTGGATCGTCCCCGC 107666 36 100.0 36 .................................... GTTGGGGTGCCGTACGTGATCCCCACGATGGGATCG 107594 36 100.0 39 .................................... CTCCACGGTCTGCCCCTTTCTCGCGGTGTGGTGTACCCC 107519 36 100.0 36 .................................... GAACGTGGCGTCTGTGCGGGCCGTCATCGACGGCAG 107447 36 100.0 38 .................................... GCGCTGACAGCCGCGGGCATTCGGCCCGTCCTGGCGCA 107373 36 100.0 35 .................................... CGTCCGTTGATGACGCCAAGCGCGTCGCCGAGACC 107302 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ======================================= ================== 12 36 96.5 36 GTGGCAATGAGGACCGGCCGGGGAGGCCGGTGACAG # Left flank : GCGGATCAACGCGGGCAGCAGTCCGCCGAGGCGCGTGCGGTGATCGGGCGAAGCGTGCCGGACCTTCCACGCACCTGCCAGCCGCTCCCGCAGATGCGCCAGATCCACCGCGCGCGACTCCGGCTTCAGCCGATATTCGGTCAACGCCACCTGAACGTCGTGAAGCGCGGCGTGAGCCGCGGTCGGACCGTACTTGGCGACCGAGACCGCGTCCCCGTTTCCGGTGAGCTCGGCCAGGTCCCGCACGTCGAGCGCGTGCGCGATCTTGGCGAGCATCGACAACTTCGGCGTCTGCAACCGGCCCGTCTCGACCGCCTTCACCCACTCGGCCGACCGCTCAACGAGCCCGCCCAGGACACGACGACTCATCCCGACGCGCTCCCGCGCCAACCGAATCCTTGCTCCCACCGAGGAAGACATGGACCGAGCGTAGGCGAAAAGACCGACAGATGACGCCGAGTGAACCTACCGAGCAGAGAACCCGGGTCTGATTTGGCAAC # Right flank : GGCTGTCGAAATTTGGCGGGGTTGACCTGGGTTTTCAAAGATCAAGGCGAGCGACCCCCGCTGGAGATCGCGCACAGCCGACCTAGACGATCTTACACCCAGCCACCAACGTCCTGACCTGCGAAAAGGGTATGCGAGCGGCCACGCCTGAGACGGTCGGCGCTGGACCGCTCGCGAAGCCGTCCGCTCGTACGGCGACCGCGCATCAGCAGGACCGCAGAGGACCAGGCGCGACGCGCACCGAGCGGACGGACTTCGCGAGGGATCAACGATGCCGATCAGGCACAACCCCGACGAACCGGACACCCCTCGTCCGGTCGGTCAGCGTACGAAGGAGGTGAAGAGTTGCAGCCAGGCGGCTCGCAGGAGGAGGCGGGTGGTGCCCGCCCTGTCTTCGTCGGCGGTCCGTTGCCGGCGGATGTTGCGCACCAGGAAAAATCCTCTTCGAATCCGTAGGGCCGGGCGTCGTCGCACATCGGCCCTGGAACTTTCGACGCCTG # Questionable array : NO Score: 2.96 # Score Detail : 1:0, 2:0, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.88, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGCAATGAGGACCGGCCGGGGAGGCCGGTGACAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-13.60,-14.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-14] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [41.7-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,0.74 Confidence: LOW] # Array family : NA // Array 3 110048-110446 **** Predicted by CRISPRDetect 2.4 *** >NZ_FOZX01000011.1 Saccharopolyspora flava strain DSM 44771, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================== ========================================= ================== 110048 34 100.0 41 .................................. TCGACCACCGACGTCTTACCCGTTCCGGGCGGGCCGTAGCT 110123 34 97.1 38 .....................C............ GGCCTGCTGCGGACGAGCTGGCATCCACCGTGTCCGCT 110195 34 100.0 40 .................................. TAGTGCAGGACCGGGGACAGGCGTGAGCGCCGGGGAGCCC 110269 34 100.0 39 .................................. AACCACTCCTGGATGATGAGCGGGTCATCACAGCACACC C [110283] 110343 34 94.1 36 .........T....C................... CCCACTGGAACGGCGCGGGCACCGCCGGGACCGGCC 110413 34 79.4 0 .............TC..T........C....GTT | ========== ====== ====== ====== ================================== ========================================= ================== 6 34 95.1 39 GTCACCGGCCTCCCTGGCCGGTCCTCATTGCCAC # Left flank : GGGCAACCGGTGATGTGGGCAGAACCTGGGCACCCCACGACCCGACGCCCCCGCTGCAAGACCTGCGAGCGCCCACGATGACCACTCGCGAAACGGCACTGGCAATCGCCCTCCGCCAAACCCAATGGCTCCTCGACGAAGCAGCCTTCAACGCCGGAGGCGGACGCCTCACCGGCCAGGACTGCCAACAACTCGGCCAACACCTCCGAGACCTTGCGGAGGTTCTCGACACGTACCCAGCGCCCGCAACCCGGACGAAGAGCCTCACGCAGTGACGCTGCCTCGCGCTCAGCTCAAGCCAGCAGAACAGGCGGTCGAGCTGTGCGAGCGGTCCAGCGGTGACCGTCCCAGGCGTAGCTGCTCGCATACCCTTTTCGCAGGTCAGGAGGTTGGCGGCTGGGTGTAAGATCATCAAGGTCGGTTGTGCGCGATCTCCATTGGGGGTCGCTCGCCTTGATCTTTGAAAACCCAGGTCAGACCCAGTGGATTTGCACAGCCCT # Right flank : TCTGGGTGGCAAAACCCTCTCTCACCCGACTCGACGGAGGTCTGTCACCGCCCCGCCGACTCAAATGCGCGCATTTTGCCTGGTCGGGGGTCGTCAGCTGATCGTGTGATGGCTAGGCTGGGTGGTTCTTGGCGGTGGGATGAGGTGGTTCCTCGTGTCTGACAAGGCTCTTGGTGAGCGGGTTCGCGAGTTGCGGGGGTGGTTGTTCACGCAGCGACAGCTCGCCGAGCGGGCTGGGGTTTCCGTGGATCTGGTGCGGAAACTTGAGCAGGGAACCCGGAATTCGGCCAGTGTCGCGAGTCTTCATCGGCTGGCTCGTGCGCTCGACGTGTCGTTGGCGGAGCTCGTCGGGCCGGGTTCGCTTCCCGAGCAGGGGAGTGGTGAGGGGGTTACCGCGCTTCGGTTCGCGGTGTCCGGAATCGATGATCTGCTCGACCCCTCCGAGATCGAGCCCGTGGAGCCTCGGGAGGTCGAGCGGACGCTCACGTACCTGTGGGGTG # Questionable array : NO Score: 3.01 # Score Detail : 1:0, 2:0, 3:0, 4:0.75, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACCGGCCTCCCTGGCCGGTCCTCATTGCCAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-10.20,-8.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-17] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [43.3-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0.37 Confidence: MEDIUM] # Array family : NA // Array 4 111956-112291 **** Predicted by CRISPRDetect 2.4 *** >NZ_FOZX01000011.1 Saccharopolyspora flava strain DSM 44771, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================= ================== 111956 37 97.3 38 C.................................... CGGGTAGGTTGTTTTTGTGTCGCCAGAGGTCTTCGACG 112031 37 100.0 35 ..................................... AACTCCTTTTTCGGGTTCATATCCATTTCGGTCCG 112103 37 100.0 36 ..................................... GTCGGAACGGGATAGGACTGTTCTCACCAGGGAAAA 112176 37 94.6 41 .................C.................C. CGGCGTCACCGGGCGTGTGACCCAGCCGAGCTCGTCGTGCC G [112198] 112255 37 78.4 0 .................CT........TTG..A.TG. | ========== ====== ====== ====== ===================================== ========================================= ================== 5 37 94.1 38 GCTGTCACCGGCCTCCATGGCCGGTCCCCATTGCCAC # Left flank : TCGATGTCGGCGTGCAGACCGAGGAATTCGGCGACGCTCTCACCGCCGCCCGCGTCATGCCCAACGCGGGAGCAGCCCTGCCTCTGGCATCCAGGGCTCGGCATCTCACCGACCGGGCACTGGCGCACGCCCGGCTGGGACAGCACGACAAAGCCGCCAACCTCGTCCTCGCCGCCGAGCAGATGGCGCCGGACTGGGCCAAGCACCAGACGCTCGTCAAGTCCGTCACCCGCGACCTGCTCGGCACCCGTGAATCCCGGACACCTCGACTCCGCAGCATGGCCGGACGCATTGGCGTCCGGTAGTCGAACACCAGGTCGCTCCGTGCGAGCGGCTCAGCGGTGACCGTTCCAGGCGTGGCCGCTCGCATGATGTTTTCGCAGGTCATGGCGCTGGTGGTCGGGTGTAAGATCGTTAAGGTCGGTTGTGCGCGATCTCCAGCGGGGGTCGCTCGCGTTGATCTTTGAAAACCCAGGTCAGACCCGGTGGATTTGGACAGC # Right flank : CCTGTCCGCAGGCGTCCGGCCGTGTGGTGGTGTGGGATTCGGGCTGCGCATGCGGTAGCTCGGGTGGGTAGTGGGACGTTGTGTCATACCCCGGTCCGGGTCGGCTCGGACATTGTGGTGGGTATGAGTGATGTGTTGCTGGGGGTTGTTGTTCGGCGGTGGTTGCCGTCGACTTCGTTGCGGGACTTGGAGATTCATCTCGCCATCGAGAGCGAGTCAGTCGGGGCGTGCGGGCAGCCGGTGATGTGGGCTGTGCCTGGCCATCCCGTGACGCGGCGGCCGCGGTGCGGGGATTGCGAGCGTGCTCGGTGAGTCGGCGTGAGGTCGCGCTGGCGGTTGTGCTGCGGCGGATGCAGTGGATGCTCGACGAGGCGGCCTTCGACCTCGGGGGAGGGCGGTTCACCTGCGCGGATTGCCGGGAGTTGAGCGAGTCGCTCCGCGAGGTGGCCGTAGTCCTCGACGACTACGTCAACACCTGGAACCAACCGGCTCGCGTTGAA # Questionable array : NO Score: 2.68 # Score Detail : 1:0, 2:0, 3:0, 4:0.70, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTGTCACCGGCCTCCATGGCCGGTCCCCATTGCCAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-14.40,-14.40] Score: 0/0.37 # Array degeneracy analysis prediction: F [1-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [40.0-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.68,0.37 Confidence: LOW] # Array family : NA //