Array 1 45222-45040 **** Predicted by CRISPRDetect 2.4 *** >NZ_BJVI01000037.1 Pseudonocardia asaccharolytica DSM 44247 = NBRC 16224 sequence037, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ==================================== ================== 45221 37 100.0 35 ..................................... ATCGGTTCGCTGGTCGACACGGGCGAACTGGTGCG 45149 37 100.0 36 ..................................... CACCAGGCGATCTCGACGGCCCGGTGCTTGGCGGGG 45076 37 86.5 0 .C..............................TGCG. | ========== ====== ====== ====== ===================================== ==================================== ================== 3 37 95.5 36 GTAGCGGCCGTCCTTCGGGACGGCCGAGGATCGCAAC # Left flank : CGCTCGGAGGGCATTTGATCTTTCAGGCGCGCCGTAGCCCACGAGGCTCAGCGGTGGATCCGGGCTTATGCCTGTCCGGTTGGCCGAGCAGGGCAGGGC # Right flank : GACCCGAACCCGAAAAGCCGCACCGGCGCGATCCGGATCATCGGGGTTCTCCCCGGCCGCCGGCTTCGTGGTGACCGTCATCGTGGACCCGGTCGACGACGCAGGCATCACCGCCTGGAAGACCACCGGAACCGACACAAGGGCGGCGGCCCGCGGCTGGTCGAGCAGATCACCTCCCGGACCCAGCTCCTGCCGATCGACGAGTGAGCTCAGAACCCGGACGAGAGGAGAAGCGTCATGAACGCCCGCCGCACCAGTCCGTCGCTGCGTCTCGCCCTCGCCGTCGCCGGGCTGATAACCCTGCTCGTCGCCGCCGGGTTCGCCGGGCAGGCAACGTGGGTGACGACCATGCTATGGCCGCTGCCGGACGGGCGGCTGTCTCACCTGTTCATCTCGGCGATCCTCGCGGGTTCGGCGATGCCGCTGCTGCTGGCCGCGGCGACCGGGGAACTCGCCGGACTGGTCGGCTACGCGGCCGGATTCGGCGTGATGTACGGCGG # Questionable array : NO Score: 5.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.78, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAGCGGCCGTCCTTCGGGACGGCCGAGGATCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGCGGTCGTCCTTCGGGACGACCGAGGATCGCAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-16.80,-18.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [30.0-30.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 10146-10761 **** Predicted by CRISPRDetect 2.4 *** >NZ_BJVI01000010.1 Pseudonocardia asaccharolytica DSM 44247 = NBRC 16224 sequence010, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================= ================== 10146 36 100.0 36 .................................... TTGGATGTGGAGTTTCCCCGCTGGCGGCAGCTGTTG 10218 36 100.0 36 .................................... CACTCCACGCTGCGGCGCTACGAGACACGGTGGCGG 10290 36 100.0 36 .................................... CCGGCCTGTCCCGTAACCAGCAGCTCAAGCTGCTCG 10362 36 100.0 36 .................................... GGCCGCATCCGGGTGGAGGCCATCGGGTTCCCGGCC 10434 36 100.0 35 .................................... CTGGCCGGCTACGCCAAGACCTCGAACAGGGTCTG 10505 36 100.0 38 .................................... ACGATCAGGTTGTCGATCCGCGCGTCGGTCTTGACCAC 10579 36 100.0 36 .................................... TGCACGGTGCCGGGTGCGCAGCCGAGGTCGTGCGCG 10651 36 100.0 39 .................................... TCGCCGTGCTCGTCGCCGGATGCTCGGGCGAGACGGCGC 10726 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ======================================= ================== 9 36 100.0 37 CTCTTCCCGGCCTTCGCGGTCGGGCTCCGTAGCGGC # Left flank : TGACCGGCGAACTTCCCGAGTACACAGCCTTTACTACGAGGTAACGAATGGCTCGCCGACGATTCTTGATCGCTTACGACATCTGTGACCCCAAGCGGCTCCGACAGGTATGCAAGACGATGGAGGAGTATGGAGAACGCCTTCAGTACTCTGTCTTCACCTGCGATCTCAGCCGGACTGAACTCATCCGTGCACGCGCGCAAGTGGAGCAGCAGATGAACCTCTCACAGGACTCCGTCGTCATCGTCGATCTCGGCGATGTCGACAGCGCTCGCTTCACCTTCATCGGTCAACGGCGCCCGCTGCCGACCCACGGACCGAAGATCGTCTGATGCGAGCGCTGGGATCCCCGCGGCACTCCGTGGGAGCGCTCGCACCCAGATCAACCAAGGGATTCGGCTGTCTCAGTGGCGCTCATCGTGACGGGCCGGTGCCTGACAGACCAAGCGCTCGCAACGGTCCAGAAAACCGCAGTTCAACTGCTATGTTTCTCGCGAGCT # Right flank : CGATGATGCGGGCGCCACACACCACCCGACCCGGGTCACGACGGCGCGGGCGGCGGGCTCCCTGAGCTCGAACTCGCCGGATAGGTCGTAGGGTCGGCCGGGTGCCCGATCTGGATCCCGAGGAGTTCCGCAGGCTCGGCCACCGGTTCGTCGACTGGGTGGCCGACTACCGCGCCGGTCTCGGCGAGCTATCGGTGCGCGCCGCGGTCGAACCCGGCTGGGTGCGCGGGCAGCTCGCCGCGGACCTTCCCGAGCATCCCCGGCCGCTCGAGGAGCTGCTCGCCGAGGTCGACCGGGTGGTCGTCCCGGCGAGCACGCACTGGCAGCACCCGGGGTTCTTCGGCTACTTCCCCGCCAACGCATCGCTGACCTCCCTACTCGGCGACCTGCTCTCCGGCGGACTGGGCACCCAGGGGATGCTCTGGTCGACCTCGCCGGCGTGCACCGAGGTCGAGCAGGTGCTGCTCGACGGGCTCGCCGGGGCGCTCGGGCTGGGCAAG # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCTTCCCGGCCTTCGCGGTCGGGCTCCGTAGCGGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-12.50,-9.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [45.0-21.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0.37 Confidence: LOW] # Array family : NA //