Array 1 40496-39551 **** Predicted by CRISPRDetect 2.4 *** >NZ_NLUP01000032.1 Escherichia coli strain MOD1-EC5021 MOD1-EC5021_32_length_49398_cov_31.642, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 40495 29 100.0 32 ............................. AATTTCTGGAAAAAAACAAATTCAAAAAATTG 40434 29 100.0 32 ............................. TGACTGCGGTTCAAAATCTCCGGCACACGTCC 40373 29 100.0 33 ............................. TCGTCGTTTATTATTGATGCTGATGTTTTTGCC 40311 29 100.0 32 ............................. GATACCGCGATTCATGCGACGATAAAAAATAC 40250 29 100.0 32 ............................. ACGAGGTACAGTGGTGCAAAAACAAATTATAG 40189 29 100.0 32 ............................. CACCACATGAACCGCGACGCAGCGATTCACCG 40128 29 100.0 32 ............................. GTTATTTTTTCACTAATTTCGGTTAGAGGGAT 40067 29 100.0 32 ............................. GGGATGAAATTGAACTTCCAGGCGACCGACAA 40006 29 100.0 32 ............................. ATTGATAACTCGCGCTCATCCATTTTGAATTA 39945 29 100.0 32 ............................. GTCTGTGATGGTCTGCTCGTGAGTCCGCGGCG 39884 29 100.0 32 ............................. TAAACACAAGAAAAGGGCGGCACGGAGCCGCC 39823 29 100.0 32 ............................. GATTTTTCGCGAACTATCCCGGCGTAATGCGG 39762 29 100.0 32 ............................. AAAATTCCATTTTATTACTGTCGGCAATTTCG 39701 29 100.0 32 ............................. GCATATTTCATGCAGCGTTCTGAATGAGTAAG 39640 29 100.0 32 ............................. GCGTGGCGCGGGGCGTATTCCCCGGCGAGTAA 39579 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 16 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCGCCACAACCTGCGCCGGATATGTTACCGCCAGCCATCCCCGAACCTGAAACGTTGGGCGATAGCGGTCATCGAGGACGCGGCTGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCGCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCTGGTTGCGGAAATGTGGTGATGGCCTGGGCGACCAATACCGAGTCGGGTTTTGAATTTCAGACCTGGGGAGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTATCCGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAGCGGTAGCATTATCCGCATAACATCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGTTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCCGGGAAGGCAGGTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [43.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 220933-222425 **** Predicted by CRISPRDetect 2.4 *** >NZ_NLUP01000003.1 Escherichia coli strain MOD1-EC5021 MOD1-EC5021_3_length_229186_cov_30.2891, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 220933 29 100.0 32 ............................. CGGCTTGTTTAATTGCGTGGAACGTCTCAATT 220994 29 100.0 32 ............................. ACGGCGTGGATTGAGGGACGGGTATTTGGTCC 221055 29 96.6 32 ............................T AGATCGCGCCACGAGGAAACGAATATGAACGG 221116 29 100.0 32 ............................. AATTTTTTATCCTCATAAACAGCCTCAGAAAA 221177 29 100.0 32 ............................. AGTTACGTCGCCATCGATATTAACGGAACACC 221238 29 100.0 32 ............................. CCGGAGATCATCATATTCTGATACGTTCCGGT 221299 29 100.0 32 ............................. CGTTATTTACTGCTTTTTCATCCGCTCTGCTG 221360 29 100.0 32 ............................. ACTCCGATAGCCTGCTCAGAATTAAGGCGCAG 221421 29 100.0 32 ............................. CTCTTTCTCAGTCATCTGGCGCTCAACGCCGG 221482 29 100.0 32 ............................. GCAGCAATTGCCGGAGTTTTACTAATTGCCTC 221543 29 100.0 32 ............................. TTTTGATTTCATTAACGGCGCTCCCCATATTT 221604 29 100.0 32 ............................. ATACAAACGCGGTGTTTATCAATATGAATTTT 221665 29 100.0 32 ............................. GCGTCGCTGGAAGAACAAAACCGCCTGATCGA 221726 29 100.0 32 ............................. GCACCACGCGTACCCCGATGTTTGTTTTGCCA 221787 29 100.0 32 ............................. ATCCGGCTATATCTTTGAGCATTACAGAAATA 221848 29 100.0 32 ............................. GGGGTAGAATTATTCTTCGTGAGCGATTTATC 221909 29 100.0 32 ............................. CGTTCTGAATCCGATATTCTTCAGCACCTTCA 221970 29 100.0 32 ............................. AGCGTCAATCAGCGCGTCTATCGCGTCACTTT 222031 29 100.0 32 ............................. ATTTGGGGGTATGAGAGCGCCGAGCCGTTCGG 222092 29 100.0 32 ............................. GCTCCCTGTCAGTTGTAATCGATAACGTTGAT 222153 29 100.0 32 ............................. ATGTAGGGGCAATCGAACGATTCTCTGCCGAC 222214 29 100.0 32 ............................. CCGAGCCCGATTATCGGCATGAGCGATGCGGA 222275 29 100.0 32 ............................. TCGAAGAAGAAAGGGAAATAATGCGAGGAACG 222336 29 100.0 32 ............................. CGCGAGAGCCAGCAAAACGCCAGGGCACAAAA 222397 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================ ================== 25 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTATTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGAATTAAGTACTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACCCCTCATGTTCAAAATAGTTCTCCATGCCAGAGAAGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATGTTGAATTAATATCTATTAATTTTTTCTTTAGGTTAATAGTTTGTTTTTTAAGCTTGTTATTCATTGATTAAGTAATAAATCTGAAAATTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATTACCGTTTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //