Array 1 78452-77647 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXTE01000014.1 Salmonella enterica subsp. enterica serovar Copenhagen strain BCW_3397 NODE_14_length_141436_cov_5.7232, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 78451 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 78390 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 78329 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 78268 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 78207 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 78145 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 78042 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 77981 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 77920 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 77859 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 77798 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 77737 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 77676 29 96.6 0 A............................ | A [77649] ========== ====== ====== ====== ============================= ========================================================================== ================== 13 29 99.5 36 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 5.99 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.23, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 96565-94584 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXTE01000014.1 Salmonella enterica subsp. enterica serovar Copenhagen strain BCW_3397 NODE_14_length_141436_cov_5.7232, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 96564 29 100.0 32 ............................. TTTGCCGATCCCCTTCCAGACCACCCTTTACA 96503 29 100.0 32 ............................. TGCAGAGTTGTATCTTACCCTGTTTACGTTTC 96442 29 100.0 32 ............................. TTATCCCAATATATTTCGCTATCAGTTACATC 96381 29 100.0 32 ............................. GACTGTTTATACCGGATTCCATGCGTTTTCAG 96320 29 100.0 32 ............................. GAATTACTGGCTAACGACGAACTGACAGTTGA 96259 29 100.0 32 ............................. CCGGACCTAAACCTGAAAAAACCGACGCCCAA 96198 29 100.0 32 ............................. GCTCATTAAATAACTATATAACCCCCGGACTC 96137 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 96076 29 100.0 32 ............................. GGCTTTGGTGAAGATTTCTGATTTGGTCATTT 96015 29 100.0 32 ............................. GATCGGGTGGTGCCGGTGGGCCATGTGGCGCT 95954 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 95893 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 95832 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 95771 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 95710 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 95649 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 95588 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 95527 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 95466 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 95405 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 95344 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 95283 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 95222 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 95161 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 95099 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 95038 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 94977 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 94916 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 94855 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 94794 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 94733 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 94672 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 94611 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 33 29 98.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //