Array 1 163304-165055 **** Predicted by CRISPRDetect 2.4 *** >NZ_VTKT01000006.1 Listeria monocytogenes strain FSL L7-0112 NODE_6_length_170281_cov_61.332164, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 163304 36 100.0 30 .................................... TCTGTGTTTCTTTCATTTCTTTCTGAATGT 163370 36 100.0 30 .................................... TTGAATGCCGTCTATATCCACGCCGAAATA 163436 36 100.0 30 .................................... CGGACGGTGGTTATGGCAAAGGCTGGCAAA 163502 36 100.0 30 .................................... AGGAATTCCCGACGTAATAGCCTGTATAGA 163568 36 100.0 30 .................................... CATACCGAGCGAGAAAATGACAATCTGCCA 163634 36 100.0 30 .................................... TTTGGATCGAACACCAAAGCATTCCAACGT 163700 36 100.0 30 .................................... ACAGATTTTTTCACTTCTTCGGCCATTCCT 163766 36 100.0 30 .................................... TTCTGATCCTGCGACAGAACCCACAGAACC 163832 36 100.0 30 .................................... TATACGCGATGAAGTTCGCGCCTTCCTTGA 163898 36 100.0 30 .................................... ATGTTTGAAAAGGGTTAATATCCAAGCTCG 163964 36 100.0 30 .................................... TGGTATAATCACATCTTCATCATAGCGTCC 164030 36 100.0 30 .................................... CCGGATGATAGCAGTACGCCAGTCGCATCG 164096 36 100.0 30 .................................... TTCATATTCTTTACCGTTGATTTCAAGTGT 164162 36 100.0 30 .................................... CGTAGTTGTGGGTGTTATTCCAAAGAGGTA 164228 36 100.0 30 .................................... TGGTATTGTGTCGTTTATGCAATTGAAAGA 164294 36 100.0 30 .................................... GTACGCCGCATCAGCAATAGCAGTGAAAAC 164360 36 100.0 30 .................................... CAATGTTAAACCAGACACAAGTACGCGTCA 164426 36 100.0 30 .................................... TAACACAGCGGCTAATGCGATGTATAGCGC 164492 36 100.0 30 .................................... TGCGACGGTTTAAAACTGCGCTGGTCATGA 164558 36 100.0 30 .................................... CAGTTTGGGGTATGCGTCGCGGCGAGGTTA 164624 36 100.0 30 .................................... TTAATCCCCGCTCGTTAAGCTCTTTATTAA 164690 36 100.0 30 .................................... AAATGAACTTATAGATGTAAAGAACCGGAT 164756 36 100.0 30 .................................... TATCAACTGTGCCAGATGTTGTATAACAAA 164822 36 97.2 30 T................................... GCTCGTTAGATTCTTGTTATTCGCTATATT 164888 36 100.0 30 .................................... AGAAAAATTAAAAGTTGCACAGGATCACTT 164954 36 100.0 30 .................................... TCTCAAAGGACAAGTAGACTATAGCCGTGT 165020 36 75.0 0 .........................A.C.ATGTCTA | ========== ====== ====== ====== ==================================== ============================== ================== 27 36 99.0 30 GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Left flank : GACAAATTAACCGCGACGATTAGCGAGTTGATAGGTTACGAATTATTGGAGCATGAACTGGATTTAGAAGAAGATGAAATAACGGTTATTGAATTATTCAAAGCTTTAGGAATAAAAATAGAAACAAAAAGCGATACCGTATTTGAGAAGTTAATTGAAATAGTACAAGTCTATAAATATCTATCTAAAAAGAAATTGTTAGTACTTATTAACGTGTGTTCCTATCTTACAGAGGAAGAACTGCTAGAGTTGAGACGGTATATCTCTTTATATCAAGTCAAAGTACTATTTATTGAACCAAGAAAAATAAAAGGATCTCCGCAAGTTACTTTAGATTCTGATTATTTTTTACATGTGGAAAATAGTGTATAAGGTAACCGCTGTTCTTTGAAAACAAAATAAATTTTATGTAAACCATAAAATAGTATTCAAAATTGAAATCTTGCTATGGATGAATGGCGCGATTACGGAATCTTGGAGGAAAGGAAAAATTCTGCGAG # Right flank : AAGAAAAAAATATTTTCATAAATCAGGTCTTAGTAGATTTTAAAAATGACTACAAAATTTTAAAAGGGAGATTCCACCATGAAAAAAACCTCAATCATTTTTATTTTTTGTGCACTCCTGCTAACCGCCTGCTCAACCACAACAAAAGAAACCCCTAGACAAACCACGGAAGCTACCGGCACAATTGAACAAGTAGAAACGGAATCTATTTTAATCAAAAATTTCAAAATAAAAAACGATAATAACACGCCAGAACTGAGTGTGCGGTTCCACATCAGTGAAAAGTACCACGACGAAACGGGAAACAAAATAAAACGAACCGAACTAAACAAAAATGACAACATAAAAATCATTTTAACAAAAGATTTCCCAATCCAAGAAACCTCGCCAGCCCAAATAGACCCAAAATACGTACAAAAAATCATCCTGCTAAACAAATAAAACTCTCTCGTCCACAGAGGGTTTTTTCTTTTCTTAAAAAAATAAACTCAAATTCCTTG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.30,-0.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-81.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 19591-18787 **** Predicted by CRISPRDetect 2.4 *** >NZ_VTKT01000013.1 Listeria monocytogenes strain FSL L7-0112 NODE_13_length_81416_cov_41.781323, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 19590 29 100.0 36 ............................. ATTTTAGATAAAATGAATTGATATAACAAATGCGCT 19525 29 100.0 36 ............................. TAATTTGCCGGAACTAATGAATTTGTTTTCAGAAGT 19460 29 100.0 36 ............................. TCATGTCGTTTTGTTTATCCATCAAGCGCTGTTGTT 19395 29 100.0 35 ............................. GACCTCAAGAATGCTCACAATCATTTCTTTTATGC 19331 29 93.1 36 CG........................... CGATGGCCCGTTTTCGTAAATGCCGATTTGCGTTAA 19266 29 100.0 34 ............................. ATGCTATCCAAAATGGATTTTAAATCTAGTCCCA 19203 29 100.0 35 ............................. ACTTCTTCAGCTAAAGTGCAACGCATCTCGACATC 19139 29 100.0 35 ............................. CGCTATTTATTCCTTGAAAACGTTAAAGGGTTACT 19075 29 96.6 36 ..................A.......... AAGTTAACGTCTACACTGACCATAGTGCCACCATCA 19010 29 100.0 36 ............................. CCGGAAGATTTAGCAGTGGATCCATTTCCGTTTGAA 18945 29 96.6 36 ..............A.............. ATACCTTTTGCAACTTTAAGTAACCGTGATTGGAGT 18880 29 96.6 37 ..............A.............. AATCGTCACGATGGGAAAGTCGTTGATAGCGCGCCAC 18814 28 82.8 0 ......A........CA.-....A..... | ========== ====== ====== ====== ============================= ===================================== ================== 13 29 97.4 36 GTTTTAGTTACTTATTGTGAAATGTAAAT # Left flank : GGCGTCCGTGCCACTACTTCAGCTGACATTTTACTTGAAAAAGGTGCCGTAGAAGTTATCGCTTGCGCAACCCACTCCGTCATGGCTGGAAACGCAACCGAACGCTTACAAAACTCCAATATCAAAGAAGTCATCACATCCGACTCCATCGATCTTCCAGAAGACAAGCAATTCGACAAACTAACAACCATCTCCATCGGACGAATCTTAGGCCGCGCAATCGAAGGCGTACAAGAAAACCGCTCGTTGCATCCGTTGTTTTAAAGAATAAGCAGGAAACAGTAACTTAGTAGAGTTGCTGTTTTTTGTTATCTGTCGACCTTGAGTAGTGCGAAAAACACCGGGGATCGACAGAAAGTTGTAAGTGGCTGGGGGAAGGGAAGTTTGGCGGTATTTGCTTGGGAAAATCTTCCGGATAAGAGGAGATTTTAGATGTTTTTTGGTAGGTCGACAGAAATAGCTCTTTGAGGTAAGATGGGAGTAAGAAGAAAAGTTAGCGG # Right flank : CCCATTCAGATTTAACTCCATCACCATCCATCAAAACCAAAAAAAGCGTGACTGCCAAACTCGCAGTCACGCTTTTTCTCAATCATTAAACTCTTTCAAAACATCCTCTTTAATTTCAGTATAATTGGTTACTTCCTCTTGCTCCTCGGAAATGAAATTATATGCTTCCACTTCTCCCAAATTCTCAAAATCGGTAAGAGTAGCGTCTGTTTCTTTCAAGTCTTCATTAAACTTGCCGTAGCCCATGCTGATAATCGAACTTAGTTTTTCGCTGTCATGTCCGCCGCGTAAAAATAATGTGTATTCTTGCTCTTGCTCAAGCGCGATATAGTTTTCAATGGATTCATACGCACCTTCATTTAAATACCAAGGTTCTGAAACGTCAATTTTGTCGCCTTTTTTGAAAGTGCCTTTGTAAGTTTCTAAAACTTCGACTTCACTTATAGTGCTGCTATATTCCATTTTTTCTTTATCGTAATCGCCAATTTTCTTATTTTTCA # Questionable array : NO Score: 6.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTTACTTATTGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: R [matched GTTTTAGTTACTTATTGTGAAATGTAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //