Array 1 51252-52256 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXTY01000012.1 Salmonella enterica subsp. enterica serovar Bovismorbificans strain BCW_3297 NODE_12_length_178292_cov_4.51851, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 51252 29 100.0 32 ............................. ATAACGGCCTCGAATTGGCTGTGAACAACCTC 51313 29 100.0 32 ............................. ATTGGAACAGAATGGGTTGTCTTTGGTTTCGC 51374 29 100.0 32 ............................. ATCGATGTCTTTTACCGTATACGGCTCGCACG 51435 29 100.0 32 ............................. CGTCTCATTCATTTCCTGCCCGGTATTTGCAA 51496 29 100.0 32 ............................. CGTCTAATTGCGCGGCTTGACGAGATGATTGC 51557 29 100.0 32 ............................. TCGTGCGCAAACCAACTGAGTACGAAGTCAAA 51618 29 100.0 33 ............................. AATACTACAGGTATTTATATTAATCAATATGGC 51680 29 100.0 32 ............................. ATGCCATGTACGCCCCGTTTTTCTCAGCGACC 51741 29 100.0 32 ............................. TCTGTCAGGCTGGCGATCTGATTAATATTCAG 51802 29 100.0 32 ............................. CACCCTGGACGACTGGAATAATGATGCACTGC 51863 29 100.0 32 ............................. GCGAACAGCGACAAGCCGACAGATTTGATTAG 51924 29 100.0 32 ............................. CTCGGGGATTTTGTGCCACCCAAAACGCTCGC 51985 29 96.6 32 ............T................ GAAGGATTACCACCCCGGCAGCGCTCACCCGT 52046 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 52107 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 52168 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 52229 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 17 29 98.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATAGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGTGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 68821-70192 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXTY01000012.1 Salmonella enterica subsp. enterica serovar Bovismorbificans strain BCW_3297 NODE_12_length_178292_cov_4.51851, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 68821 29 100.0 32 ............................. CGCTCCCTGACGCCGCGTTTGTCCCCTGCAGC 68882 29 100.0 32 ............................. TAGGAATAGCTCAACCCGTTGATTATTTTGCT 68943 29 100.0 32 ............................. CTAACAGGGTTAAATTTTCATTCACCGACAAC 69004 29 100.0 32 ............................. CATCCAACAGACGGTTTGATCTTTATTGCTCA 69065 29 100.0 32 ............................. CGCGGAGATGGCGTTATCACAATGGGCGTAGT 69126 29 100.0 32 ............................. CCATCAGGCCGGATGCCTTCTTTCGTATGCAC 69187 29 100.0 32 ............................. GCTACATAGTTGGTCTTCTTTTATCTCACTTC 69248 29 100.0 32 ............................. CAACCGAGCTTATCACGAAGCTAGGCGGCAAT 69309 29 100.0 32 ............................. TATGAGTATATTGATTTATTTGAGACTTCTGC 69370 29 100.0 32 ............................. CCGGTAAATTTAATGGCGGATTTAATTAAACC 69431 29 100.0 32 ............................. AATGATGAGGGGCTGGCAACGTTTAGCGCCAC 69492 29 100.0 32 ............................. CTGGCCACTCAACAGGGAAATATCGCGTGCGC 69553 29 96.6 32 A............................ TTAATCCCCACGGCCAGGAGGTATTGATCAAC 69614 29 100.0 32 ............................. TCTTTCAGGCATTGCGTGAAGAACTTCCTGAA 69675 29 100.0 32 ............................. CCGGAAAACTATCTCTATCGCAGGCTGGATAT 69736 29 100.0 32 ............................. TAAGTTACGCCAGTGCGGGCGTGTTGCTCATC 69797 29 100.0 32 ............................. GAGACGCCAGATGAATTCTGCGGGACAAGAGA 69858 29 100.0 32 ............................. GTCTGACCAGTGGCGTGGGGGGATTGCAATTT 69919 29 100.0 32 ............................. CGTGGCTGGAGCAATGAACAGATTAAAGGGGG 69980 29 96.6 32 ............T................ AAGCCATTGACGCAACGGAAAACGCCAATGCT 70041 29 96.6 32 .................A........... GTATGATTTGGACATAGCTAATGATGTAAAGT 70102 29 100.0 32 ............................. AAGACAACTCCTGTCTTTCCATCACTCGAAGC 70163 29 100.0 0 ............................. | A [70190] ========== ====== ====== ====== ============================= ================================ ================== 23 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : ATTCCTCTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCACAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAAGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTATAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGA # Right flank : GTTTCAACAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCTTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGTGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //