Array 1 1269297-1269029 **** Predicted by CRISPRDetect 2.4 *** >NZ_WHZZ01000001.1 Photorhabdus khanii strain HGB 1456 NODE_1_length_1453311_cov_38.469422, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 1269296 28 100.0 32 ............................ CACAAACATACCCCTGAATTACATCATCCGCA 1269236 28 100.0 32 ............................ TATATCGGTGGGGCATTCTGTACTGATAGATT 1269176 28 100.0 32 ............................ GTTGTATTCCAGTGCCTTATACTGGGCGATTA 1269116 28 100.0 32 ............................ CAGATGATAACCCAGATGCTCGTATTTAAGTC 1269056 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 5 28 100.0 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : AGCGTCAGCAGGGTATGCATCGGATTATGGCTAACTATATGCCTAATAATCATCGTAGTGGTAAATTATTGGAACGATTGGGTTTTGAGCGTGAAGGATATGCAAAGAAATATCTGATGATAAATGGAATTTGGCAGGATCATGTATTAACCGCACTGACAGATGAAAAATGGAATGGAAAAAGCTGATGATCAGATTGTACTGCTAGATAAACAAGAAACTGCCTAGTTACAAAGTTATAGCGGAACTTAAATTACAGTCTCGTCGTAAGCCCCATCATGGGGCTTTTGCTCATTAATGAACAAACAGATGTAGAGAGAAGGAGGGAAATGTAACTTGAAAGATGGTGTTTCCTCATACCTTATTTTTGACCCTTTTTTCTCAGTTAATTATAACTTATTGATTTATTTAAGAGATTAGCATTTGTTAAAAAAAAGGGTTTTTCTCCTTTGTGTCATTTTGCTCTTTAATAATCAAGAGATTAAAGTTAGTATTCAACA # Right flank : TTAGAAAGATCGATTTATAATACCCTTTTGACGCAAATGGTATTCTCTGACAGACTGCAATGCATAGGAGCTATCTATATAGCAGACTTACCAATGGAGGCAACCATGAGTCATACCCGTTACGAAACTGATGTGGTCGCTTGGGCGAATGAGCAAGCAGCATTATTGCGTGCAGGTAAATTCTCTGAGATCGATATAGTTAATATTGCCGAGGAGATTGAGGACGTGGGCAAGAGTGAAAAACGTGAACTGGCAAGTCGTATGGCGGTTTTGTTGGCCCATCTTCTGAAATGGCAATTCCAGCCTGGCCGTCGTGGTTCAAGCTGGCAACGAACTATCAGGGAACAGAGAAAAGCACTGGAATTGCATATAAAAGAGACACTTAGCCTGAAAAGTACCATTGCTGATGAAAACTGGTTTGCTAAAGTTTGGGCTGATGCCGTTTCTTCCGCTGCCGACGAAACAGGGCTGGATATGTTCCCGGATGAATGTATCTGGAA # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [65.0-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.24 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 396526-396733 **** Predicted by CRISPRDetect 2.4 *** >NZ_WHZZ01000003.1 Photorhabdus khanii strain HGB 1456 NODE_3_length_514107_cov_44.499596, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 396526 28 100.0 32 ............................ TGTTGGAGCAATAAAGAGACTGGCCGCCACAC 396586 28 100.0 32 ............................ CTTCTCCAGTTCATGGCCTGGAAACAACAAGA 396646 28 100.0 32 ............................ TACCCAAAGTGATTTTTGGGGCGTGGTTAGCA 396706 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 4 28 100.0 32 GTGCACTGCCGTACAGGCAGCTTAGAAA # Left flank : TTTCCTTTGTTATTGGTTTATTGTTAGGATAAAATGCTTAAATGACTGTATTTATAAGATCCGTAAAGAAGATATTTTTTCTAATAGATTTAAATGGTTTTTTCGGGAATACATCGTGAGAGTTTAATAAATGCTAACTTTAATTTTATCTTGCTTTGGTAAAAATGATTACATTAAAAAATTTAGAAAAAAGATAAACGGAAATAAATGTGTATATAGCCGACATCTTATTGTTGTATAAGTTATTTTTTCCTCGTTCCAATGATTAAAAAGCTTGCATAGAAATCCACTTTCAATGTCTACCAAGTTTTACCTGGGTTTACATTTTTATTGCTAAGAAGGATGGTGTCTCCTTGGCACCTTGGCTTTGACCCTTTTTTATCGGTAAATTATAATTCATTGATTTTAAATAGTGTTTTATCTCTTCTGTAAAAAAGGGTTTTTTGACTTTTTATAACTATACTTTTTAATAGTCAATAGGTTAAAGTTAGTCTGTAACA # Right flank : AACTCGGTGTTATTCCTGATTCATGAAAGACACTATGTAATGTTTTGGTAAGGAATTGTAAATTTTTTTAATTTACATTCCCGATATTTTACTTGTGTAAAATTTATGCATAATATTTTCTATAAGTAAAATTAATTATTTGGGCGATTCTTGACTATGGATAACAACTTTTCTCCGAGTGATCTCAAAACGATTTTGCATTCCAAGCGATCGAATATTTATTACCTGCAATATTGTCGAGTATTAGTGAATGGTGGTCGTGTTGAATATGTCACTGATGAGGGAAAACAATCACTGTATTGGAATATTCCAATTGCCAATACCACCGTTATTATGTTGGGTACGGGGACTTCTATTACTCAAGCTGCAATGCGTGAATTCGCCAGAGCGGGTGTTTTAGTTGGTTTTTGTGGTGGTGGAGGAACGCCGCTGTTCGCAGCTAATGATGTTGAGGTTGATGTGTCCTGGCTTACGCCACAAAGTGAATATCGTCCTACTGA # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.60,-9.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.78 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 408134-408701 **** Predicted by CRISPRDetect 2.4 *** >NZ_WHZZ01000003.1 Photorhabdus khanii strain HGB 1456 NODE_3_length_514107_cov_44.499596, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 408134 28 100.0 32 ............................ AACAGGAACGTTGATATCATCTAGCATTGCCA 408194 28 100.0 32 ............................ TGAACCGGCCATAACAGAAGAGTGGATGTTCT 408254 28 100.0 32 ............................ TTGGAATCCAAGCAGGAAAGCAATACTTAAAG 408314 28 100.0 32 ............................ GTTAGCCATCCCCCATTAAATTCATCAGGAAT 408374 28 100.0 32 ............................ AACTAAGAATATCCTGTTTATCAAAATCCGAG 408434 28 100.0 32 ............................ AGATGCGGGCTTTAGTGCTAATCATGATGGTT 408494 28 100.0 32 ............................ CTCTGTACATAATTTCTTTTGCTGTCTTCCTG 408554 28 100.0 32 ............................ GCAATGGGCAATAAGTCAGTACCGACAACAAT 408614 28 100.0 32 ............................ AGTTTGATGAAGTGATTTCATGGCAGGGTGTC 408674 28 82.1 0 ......................GC.CGC | ========== ====== ====== ====== ============================ ================================ ================== 10 28 98.2 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : AAGCGTTGCAGGATTTACAGGCGTTACCTTGGTTAAAAGGGCTCAGGGACTATACTGAAATGGTTGATATCCAGCCAGTACCTAAAAACACTCGATATCGTTGTGTTAGCCGGGTACAGGTTAAAAGTAACGCAGAGCGGCTTCGTCGTCGTTCGGTTAAAAAGGGCTGGCTAACCGAGGAACAAGCCCGGCAATGCATCCCAATAAGCAAAGAACAACGTACTGATTTACCGTTTCTGAACCTCAAAAGCCTGTCATCAGGACAAAGCTTTCCGTTGTTTGTTGAACAAGGACCAATAGAAGACAGACCAACACCAGGAGTTTTTAGTTCTTATGGATTAAGTGCGTCAGCTACCATCCCCTGGTTTTGACCCTTTTTTAGCGGTTAATTATAACCTTTTGATTTATTTAAGAGATTAGCCGCTGCTTATAAAAAGGGTTTTTCCGCTTTTTTTAACTATGCTCTTTAATAATCAGTAGATTAAAGCTAATATCTAACA # Right flank : CTCAATTGAGCGCGCTAAAAAATAAGCTAATCTTGTTTTCTAATATGAGTTATTTCTTATGGTTTTGAGCATATTCTTCACTGTTAACCCATTGATGGTCTTTCTCCCAGGTAAATAGCCACTTGCGAGTTGGTCCTGCCATGACATTGAGATAGTAGTTGTTATAACCCGCAATGGTTGCCACAGGGTGATAGCCTTTGGGAACCATTACCACATCTTTGTTATAAACCGCCATTGATTCATCCAGTGAACAGTCATCGGTATAGACTCGTTGCATACAAAATCCCTGCGCTGGGTTCAGGCGATGGTAATAGGTTTCCTCCAGATAGGTTTCCTGTGGTTCATTGTCCGTATCGTGTTTGTGGCTGGGGTAGGAGCTGGTGCAGCCTTCATCGGTGAAGACTTCGACCACTAATAAGCTATCAGCAGGTTTGTTATCCGGCAGGATATTGTGAACATAGCGCTGGTTGCAGCCGCTCCCGCGTTTTTCTGCGTCAATA # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //