Array 1 1041252-1039911 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP072801.1 Thiothrix litoralis strain AS chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ================================================== ================== 1041251 37 70.3 50 ...A.T.TTA.A.....AACT..A............. GCGCAACCCCTCGAAAAATCTCTTGTATTTTATGCCCTTACACACGGGCT 1041164 37 100.0 33 ..................................... AGTATCCAGCGGGCACAAAACCTGCTGAAGCAA 1041094 37 100.0 34 ..................................... TTTTGAACGCGCGGACAAATACCATCCAAGCAGA 1041023 37 100.0 33 ..................................... CATCCACATCCACAGTCTATTCTGCGGGGTTTG 1040953 37 100.0 35 ..................................... CAGTCAGTCGCCCAGGATGGAGCGTCGACTGGCGG 1040881 37 100.0 35 ..................................... GATGCTCCTCCTAGCGACCCTACTTCCCGGATGCG 1040809 37 100.0 35 ..................................... AGCCCTAATCGCTGGTAAAGCCGGGATTGAAGAAT 1040737 37 100.0 35 ..................................... ACCTTGGCTCTCACGAACAGCACTGCATATAATTG 1040665 37 100.0 34 ..................................... ACTACCTTAACTTTGACCCTGCGGAATTGACCGA 1040594 37 100.0 36 ..................................... TAACACCATCCCCAGATGTCGGCGGGTCTTCCGACC 1040521 37 100.0 35 ..................................... CACTGCTTCCAGCACGTAGTCATCGCGCACGAAGT 1040449 37 100.0 35 ..................................... GCGGTGGGTGCCGATCCAAAGCCACAGGTAGATGC 1040377 37 100.0 34 ..................................... AAGCCCCAATACCTTTTCGCGGCGCATACAAAAT 1040306 37 100.0 36 ..................................... ATCGTCATTTGTGAATTCGTAATATGTCAGCACACC 1040233 37 100.0 34 ..................................... AGCACGGTTTTGGGCGTGCCGAATACAGCAGGGT 1040162 37 100.0 34 ..................................... GACCAATTACATCCGGTCTACAATTGTATGCAGT 1040091 37 100.0 35 ..................................... CCTGTATCACCATCCCACCTAACAATAGCATTATC 1040019 37 100.0 35 ..................................... GATGGTCAAGCCTGCGATATGGATAGTCATTTGTG 1039947 37 97.3 0 ................................A.... | ========== ====== ====== ====== ===================================== ================================================== ================== 19 37 98.3 36 ATTCTCCCGGCTTTATTGGTCGGGAGTGGATTGAAAC # Left flank : GGTGTTACGAATCCAGCCAACACCCGGAACAGGAACATAGCTGTAGTCTGCGGTAGTCGCATTGGCTTCATTCCAAATTTGGTTACACTCGAACGCCCACTGCTTTAGGACAGCAGCGTGCTTGTCCTTGACGCGGACTTTGAGTGTTTTCAGGATGGTGGCTTCTGTATTCATGTGGTATATTCTACACTCAGTTAACTAGGAGAACAACATGGAAAGCACAAAATACGCATCAGTCAGGGTGAAAGTTGAAACCTATCGTGACTTGAAAAAAGCCGCGATAGATGAAGGCATTCCATTCACACAGTTGATTGACAAGCTGCTTGCTCTTTACCAAGAAAGAGAAGTTAGCCAAAGACGCTTATATCCCCATGCCTAAAGGCAGGGGTATTACGCGATTTGTGATAAGCTACGCGAACCCTTAGCTATGCCGAAAAAGCGGGGGGGTTCGCGGATTTTTAACTTGTTGATTTTCATGGTACTTTAAATGTCTTCCTTCT # Right flank : ACATAGCTGATCGTTTGTGTCAATGCTTAACATACCCCAAATTCTCCAGCGCAAAGCGTTTCGGCGTAATCCCGAACGTTTGCCACGCCGAGTTATCGCTACAGGTATTCCCTTCCAGCAACATCACGATCTGGTCACGGGTAATCGGGAACCATGCCTGCTTATCCAACACGCCTGCGACCACTTTGAGGATTGCCGCCGGGGCAGGCACGGCAAGTTTGCCACTGCGCCCGGAAGCCTGCGCCAAGGTCTGAATAATGGCTTTCCAACTCACCGCATCCGCCCCGCACAACGCAAAGGTTTTGCCGATGGCAGCAGGATTATCCAGCGCCCCTACGAACGCCTGCGCCACATCCGTCACATGCACGGGCTGCATCTGAAATTCACCCGCTTGCAAGATATTCACCCCGCCAAAAAACAGCGGTGCGGGAATCGGCGGCAACACCAGTTCTTTCTGCAATTGCGTGCAAAACTCCATCTTGCCACGCGGCTCACCGAAA # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:0, 3:3, 4:0.91, 5:0, 6:0.25, 7:-0.00, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTCTCCCGGCTTTATTGGTCGGGAGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.35%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.40,-11.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,4.87 Confidence: HIGH] # Array family : NA // Array 2 1153167-1157683 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP072801.1 Thiothrix litoralis strain AS chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ====================================== ================== 1153167 28 100.0 36 ............................ GCGTTCGCGGTGTTGCGCCTCTTCCTGTTTCATCAG 1153231 28 96.4 36 ....................C....... ATCCGCAACGCTGGAAAAGCCGCGCAATACGCCGCT 1153295 28 100.0 36 ............................ CACGGATGGATGGCTGAGTTCCAATCCGCACACGTT 1153359 28 100.0 36 ............................ TCAGCATCTTTTCGGCATCAGCCCGAGCTGTTAACT 1153423 28 100.0 36 ............................ AGTGCCTAGCGGGACTGCCACTTATGACAAATTCGG 1153487 28 100.0 36 ............................ GCAAATGGCAGCGGCAGGGCACGATTACGGCTACTG 1153551 28 100.0 36 ............................ CTTTCAGGGTCACTACAACCCCTTTTCCTTTTATCA 1153615 28 100.0 36 ............................ CCATGCCTGAGCCTGCACCAACTCCGACGGAATATC 1153679 28 100.0 36 ............................ TCCTGTATGCATTGCCGCAGTCCCAGAATTGGTTAA 1153743 28 100.0 36 ............................ CCTGTTGCTTGCGTCTACGCTTGTTTTTGGCGGCAT 1153807 28 100.0 36 ............................ ACAACGCGCCGATCTTGTCCGCCAAACCGCTGCACT 1153871 28 100.0 36 ............................ ACTTTTTTAACTGGCTAACTGACGAGGCATATTCAG 1153935 28 100.0 36 ............................ TCAGGCATGGGCGTTGCTCAAAACCTCTACGGCATG 1153999 28 100.0 36 ............................ CCCCCACAGTTGCGGCGGTGATGATTGCCCATGCTC 1154063 28 100.0 37 ............................ TCATCGCCGTATTCGCGGCAATATTCGCGTATTTCTT 1154128 28 100.0 36 ............................ CTAAATTCTTCTTTTCAATTCCAAGCCTTACTGGAA 1154192 28 100.0 36 ............................ TGCCGTCGGAACAGATGAACCGCGAATAGCTGCCAC 1154256 28 100.0 36 ............................ TTCTGCCCGCGCCTAAAAAAATTGGGGCATCAACGC 1154320 28 100.0 36 ............................ GCTGACATTGGCAAATACGGTGCTCAACAATCTATT 1154384 28 100.0 37 ............................ TGTGCTGCACACCCCAATCATCAGCCCATCACTTGCC 1154449 28 100.0 35 ............................ AAGGATTCGCCCCCGACCTCGACCCGACAACTCCT 1154512 28 100.0 36 ............................ TAGTACCAGCGATAAAGTAGTGTACCCCGTCTGCAA 1154576 28 100.0 36 ............................ CAGTTGGTCACCAGTGCCAAGCCCCACCTTCACCGT 1154640 28 100.0 36 ............................ TCTGTGGCGGTGGGGGCGACACGACGGGTGGCGATG 1154704 28 100.0 35 ............................ TTGTTGACCAAGCCATGGACGAAAGTGAGGTTTAC 1154767 28 100.0 36 ............................ TCTTGAACGAATGGCGGAAAAACAACCCTATTAAGT 1154831 28 100.0 36 ............................ CTTTATCTGCTGCTACCTTGCTGCGCTCGTTCTCAA 1154895 28 100.0 36 ............................ CTTTTGTCACGACATAGTTGACGTAATCCGATTCTT 1154959 28 100.0 36 ............................ GGGGTGGGTGCTGGTAGCCACGGCTGCAAAATGCAC 1155023 28 100.0 37 ............................ TAAATCTGGTAGTACCGTCTACATCAAGCTTAAATGT 1155088 28 100.0 37 ............................ CTGCTTTGTCCGCGCTACAAGTAAGTGCTGTGCAGCC 1155153 28 100.0 36 ............................ GTAAAAACGTGACGGTGCGCCTTGTCGGGGTCGACT 1155217 28 100.0 38 ............................ GCGCCTTGCTGACGCCCTAGTGTTAGCAACCCGTACAT 1155283 28 100.0 36 ............................ AAAACCAGCGCTTGATATTAATGCCAATGCTGCGAG 1155347 28 100.0 35 ............................ GAACTTGCCAGCATGTTTGGACTCGATCAATCTCA 1155410 28 100.0 36 ............................ CGACCGTTTGCGCTCATATGATTTTTTTGTTGACAT 1155474 28 100.0 35 ............................ AAGCAAAACCAATTCGACGCGGGCGAAGTAGCACA 1155537 28 100.0 36 ............................ AAATCACGGATTTGGCGAAAAACAGTCAACAACATG 1155601 28 100.0 36 ............................ CAAGCCGAGGATGTTATCTACCACCAGAAATTCACT 1155665 28 100.0 36 ............................ GTCGTAACCCTGTCCAGCCGCTACGCCCATCAATCC 1155729 28 100.0 36 ............................ TGATGGGCAGGAATCAGAAGCGACACTTGCCGAACT 1155793 28 100.0 36 ............................ CAGGCTGTTGGTGAGCGTATCCCGTTTGCTGGTACT 1155857 28 100.0 37 ............................ TATACTTACGTCATCGCGCTCAGAGTTTGCAAACGCT 1155922 28 100.0 36 ............................ AATGTGAGCGTTGGCTGCTGCGCTTGCCAGCACATC 1155986 28 100.0 36 ............................ AATGGATGTTTTCCAGATAAAACAGGCGGTCACGCA 1156050 28 100.0 36 ............................ TATCGGCAACTATACGCAAATCCTGAAAAAGACAGC 1156114 28 100.0 36 ............................ GGATTTTTGTAAGCGAGTCAGTCGCGTCGTACTCAC 1156178 28 100.0 36 ............................ ACTCACGGTCACTTGACGGCTGGAACTATCATGGAG 1156242 28 100.0 37 ............................ TTTAGTCCTGTTGGTTATTTAATTCAATGTTTGCAAG 1156307 28 100.0 36 ............................ CGATATAGACGAATGCGACCGCCTTGCTGATGCGCT 1156371 28 100.0 36 ............................ AAACGTCACGATTTCGGCTTTACCGGCCTCAGCTTT 1156435 28 100.0 37 ............................ GAGCTGGATATTAAAGCCTATGAGGCCGAAACCGCAC 1156500 28 100.0 37 ............................ CCTTGTTCGATCAGATTCCCGTCCTTGTCGTGCTCAT 1156565 28 100.0 36 ............................ GCCAGCCTGATTAATGACTGCCTGCTACAGAAAAAC 1156629 28 100.0 36 ............................ ATGTCAATTACTCCTTAATTAACTCCCGACTAAGTT 1156693 28 100.0 35 ............................ GATTTTGTGGCTATGGGTAACGGTTGCACTTGTTG 1156756 28 100.0 36 ............................ AAAACTAGCGAGAAAAGAAGAATTAACACACAGCAA 1156820 28 100.0 36 ............................ CCACTTTTCCGGCGGCGGACTGATGTCAGCAAGCAC 1156884 28 100.0 36 ............................ CTGATATAACAACTGACAACGTATCTGTGCCCGACT 1156948 28 100.0 37 ............................ GATTCATAGCCCTCAACGTAAGCGGCCCTCTCTGCAA 1157013 28 100.0 36 ............................ GCGGACAAAGCGGCTGAACGGCTGTATGCGCGTTAT 1157077 28 100.0 36 ............................ GCCACGTACTGCCACGCGGGTCTTCTGAGAATCCGT 1157141 28 100.0 37 ............................ CATTCTTTCCGCTCCAACGGGGCAAGGATGATAGACA 1157206 28 100.0 36 ............................ TCTAAAAGCCTATCTTCAATACTGATCTCAGCGTCT 1157270 28 100.0 37 ............................ TCTGTATGCGTTTGATGGCAGCCACCCGCGCTCTATT 1157335 28 100.0 36 ............................ ATTGATGAAATGGGCGCGGAAGGATTGCCCGGCGCT 1157399 28 100.0 37 ............................ GCGCAAAATGCCATGATGTTTGTCCATCTCCCATTAT 1157464 28 100.0 36 ............................ GCTCGATGCCATGCGCCGTATCATTGGCAATGTCGT 1157528 28 100.0 36 ............................ GATACGTTCACGCGCCCGCTCAACAATGCCTTGCAG 1157592 28 100.0 36 ............................ CTTTGCCCGGAATCCACGCTGACCCGGCGTCATGCC 1157656 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ====================================== ================== 71 28 99.9 36 CTCATAACCCCTCATGGGGATTCGTAAC # Left flank : CGATCCACAAACGGCTCCCAACCATCAATCGCCTGAATTTCGTCGAAAAAGCAGTATACCTTTTCACTGTTTTTCTTGTCGGGGTAGAGTGAGTAATACGCATCAAGAATCACCCCCAAGCCACTTTGCTGAAGCCCGTGCAAACGGTCATCGAAGAAGTTCAGGTACAGAATATTCTGCCGTATTACGCCTTTCCCCAGCAGCCCCTGCATAAGCTGAAACAGAAAGGTAGATTTACCGCTACGGCGCACACCGATACAGACAGTGGCCTTGCCGTGGAGAGGCGTAACATCCAAATGGCGCGGAATACCTGAAAAAACTTCAATCTCTTGAAAATCCAATATTATTTCTTGGAGAATCTTAATCATAGTGCGTCACTCCCGACAAAAATCCATCATAATCTTTACAGTCATTTATAATAATGGATGATTTAATCGAAAAGTGTTGATTTTTTTTAGCACTTTGCGTGATTTTAAGAAAATGTAGCTTCTCCTTAATCA # Right flank : CGCCCGATTTCAAGCCAATTTTGGGTATGACCGCTTGAATCAGACAGTGTAAACATAGCATGAAAGAGTGATAGATATTCATCAAAGGTAGGGAATTTTTACTTCAGTGGCGGGCGAAGTTGCCTACAAAACCGAGAAATCACGGCGATGGTCATCAACGGGTGTCTGTTTCAGCTCACCCTTGCCAGAGTCACTTTTAGACAGATGATTGACCTCGACATTCTGGCGGTTGGCAGCACTGATTTGTGTTACCCGATCACCGGGGATCATAAGCTTGCCCAGCTCACGCCGCAATTTAATCGCCTGCGCATCAGTAATGTCGCCAGTAAACACCGAATACTGGTCATGATTCAGATAGCGACGTAGCAGCTTCTTGAATTTGTCGGTGCGTTTGGCTTCGACATCGTAAGTCATCAGCATAAACATTCATACCCTCCGTTTGAACGCTTCATATTCCCCGGCTCCCAGCACTTCGCGTTCCAGCCCTAGTGCCTCACGGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCATAACCCCTCATGGGGATTCGTAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.50,-6.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0.41 Confidence: LOW] # Array family : NA // Array 3 2563557-2564424 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP072801.1 Thiothrix litoralis strain AS chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =================================== ================== 2563557 36 100.0 35 .................................... GTTTCCGCCCTTGGCGTATAACCAAGCGATTGATG 2563628 36 100.0 33 .................................... CACCAGCTTCAGCGCATTTTGCCAATTGACCAC 2563697 36 100.0 35 .................................... ATCGGCTGGATTTCGTATTCAGCAAAGCAGGTGCG 2563768 36 100.0 34 .................................... GCGGCGCGGAACATCAATACCACGTCTTTTCCGC 2563838 36 100.0 32 .................................... GCTGCATCACAGTCTTCATCAGCGAATGCAAC 2563906 36 100.0 33 .................................... TGTTGAAAGAATCATGGTGGTGTCCTTGTAAGT 2563975 36 100.0 33 .................................... GTTAGCGTCCTCAACATCACCGTGTGAGAACAG 2564044 36 100.0 34 .................................... TGGCAAGAGCCACTTTAACTTCAGTCATGCTGAC 2564114 36 100.0 32 .................................... GAGGGAAAGATTCCCACCTTTGGCGTAAAGGT 2564182 36 100.0 35 .................................... CAAACACGTACCAAGGGCATTTGTGCTCGCTGCGG 2564253 36 100.0 32 .................................... CGACATTAATGCAATGGCGCGTTTTTTGTTTC 2564321 36 100.0 31 .................................... ACCGCCACTATCGCCAAGGCGTAAAAAAACC 2564388 36 77.8 0 .........................A.A.AATCCT. | G [2564412] ========== ====== ====== ====== ==================================== =================================== ================== 13 36 98.3 33 CTCTGAAGACCGCCCTGATTTAAAAGGGATTAAGAC # Left flank : TCATGCGGGGGTGGAGCTGCCGGGCGATTTCAAGGCATTGAGCCAACAGGCGGCGGGCGTGGCGTTGCACGCGGTGGACTTGCGTTGGCATGAGTGGTCGCGCTATTCCAACCGCCAGCAAAACAAGGTGCAAATGGGCGGGCTGGTGGGCAGCTTTGCCTTGGTGGGCGCGGGGTTGGAAGATTTCTGGCCGTGGTTGTGGCTGGGGCAATGGGTACACGCGGGTAAAGGGGCGGTGATGGGCATGGGCGAGTATGCGCTGCATGGCGAGGGAGAAGAAAATCCCCTCTGCCCACCTGCTGCAAAGGAAGATTGAAATCGACCTTTCATCGGGCAAGCGTTTGGTATAATATCAATCTATCCACACAGTCGGCGCACGGTGTGAGCTGTTTAAAAACCTAACTCGGTTAATTTTATAGCAAGGCAACTTTTTATACAGCCGATTTCCTGCTAAGGGTCTCTGTAACCCACTGATTCAAAAGGCCGATTAGACACGAGCC # Right flank : CCCCCAGCCCCTCCTTTTGCAAAGGAGGGGAGCAAGACAATGTATCCACTTAATTCTTCAGGGTGTTGTCTGGTCTCCCCTTTTGCAAAAGGGGGATTTAGGGGAATAAACTTCATCGTTAACTTCTAAATCCTCACCGAACTCGACACCGCCCTCACCCAAATCCACCAACAGACCCATTCTTAAGCCCCCCTTTGCAAAAGGGGGGTTGGGGGGATTTTCTCCCCACTTCCGCTTATAATTCCCCTCATGAACCAACCTGATCCTACTCTGCCCCATACGTACCCGCGCCGCATCCTGCTCGCGGTCGCCGCCTATTCCCCGCAAATTGTGACCGAAACCTGTTACGCGCTGGCGCTGCAAACTGACCCGCCGTGGCTGCCCACCGAAGTGCATATCATCACCACCCAACGCGGTGCTGAGTATGTGCGTGCTGGTTTGTGCGCCACTCGTCAGAATGAGCTGGGGAAATTGTGTGCGGATTACGCCTTGCCTCCGCC # Questionable array : NO Score: 3.17 # Score Detail : 1:0, 2:0, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCTGAAGACCGCCCTGATTTAAAAGGGATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.00,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 4 2580887-2581543 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP072801.1 Thiothrix litoralis strain AS chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =================================== ================== 2580887 36 100.0 32 .................................... CCATCCCAAAGCCTTTTGCAGCGCAAGTTTGG 2580955 36 100.0 32 .................................... AGCCTTGATAAACCCGCTTACACCTCTGAAAG 2581023 36 100.0 32 .................................... TGTCAGGCAAATCTGACCATTCCATTTCATCA 2581091 36 100.0 35 .................................... CGTCCAGCATGAACACATCATCGTCGTGGTGAATG 2581162 36 100.0 33 .................................... GTAGCGTGGCATGGTCTAGTCCCCATTGTGGTT 2581231 36 100.0 32 .................................... ACGGCGCAATAGCCGTTACGTGGTGACACCTC 2581299 36 100.0 32 .................................... GCATCGCGTGTCTCATAATAGAAGTCTTCACA 2581367 36 100.0 35 .................................... CTTGCAACTTGCGCTCTTCCCACTCATCTAGAATC 2581438 36 100.0 33 .................................... GTGTGCTGATGCTGACATTCTTGCCTGATTTAC 2581507 36 83.3 0 ...........................T..CGT.TT | A [2581533] ========== ====== ====== ====== ==================================== =================================== ================== 10 36 98.3 33 CTCTGAAGACCGCCCTGATTTAAAAGGGATTAAGAC # Left flank : AAGCAAGATGATATTCGGGTTTATCCGTTGCCGAATGAGCCGGAATGGGTGAAGTTGGGCAAGGCATTGTGGGATGATGGGCTGCTATTGACCGGGGCGAAGTTGCCTGCTGAAGTGCGCTATAATCGGGATACGTTGTAGAAGGAAGAGGTATGAATATGCTGGCAGCAAAAGTGACCCCGGAAAATTCGGCGTAAGATCAACCGCTGCTGACGCTGTTTTATGAGTTGGAACAAACCCTTACGCTGCCTTGCCCTGATAGCACGCTGACACTGGCGGAAATTTACGAGGGGATTGATTTCAGCCAATCTGCTGAATAATCCTTCCATCCGCAGCTAAATAGCAGTAGAATCAATCCATTAACACGAAAAACCAAGTCGTGTAGCCTCTTTAAAAATCCAGATTGTATAATTTTTTCTCAAGGCAACTTTTTATACAGCCCATTTCCTGCTAAGGGTCTCTGTAACCCACTGATTCAAAAGGCTGATTAGACACGAGCC # Right flank : TGAGGTCAACAAAAAATCCATAGGGATTTTTTATTAACCCCGCTATTTAAATACGCTACATCGTTGGTGAAAACGCCTGCTGGTTCTTCAGCACACCAAAACAGATATGCACCAGTTTACGCATGGCAGCGGTCATCGCTGCCCGTTGATGCTTCTTTTGATCCAGCAATTTGCCATAAAACTGTTGAACAACCGGGTTGTGGGTAATCGCAGCTACCGGCGCGGGCGCAGTGTGCAGATGGCGTTGCCGCAACGCTAGACTTACCCTATGATTAAAGCTCAAGTAGCGATAGGGGCAATACCATGCTAACAGTCAAAATGACGACTGAAAATTCGGCTTATATCACCGAGGCAGCATACTTGGAGGGTGAGAAACTCGCGGAAGAGCGCCATGAGTATGTGGATGGTGTGTTGTACGCGATGGCGGGGGCTTCGTTGCGGCATAATCGTATTGCGTTGAATATTGTGCGGGCTTTGCCGTTGCAGCGTGAAGATGGCAC # Questionable array : NO Score: 3.17 # Score Detail : 1:0, 2:0, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCTGAAGACCGCCCTGATTTAAAAGGGATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.00,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.27 Confidence: MEDIUM] # Array family : NA // Array 5 2582679-2583553 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP072801.1 Thiothrix litoralis strain AS chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ==================================== ================== 2582679 36 100.0 34 .................................... AGTGCAGCACGTGCCGCTGTGTCGATTTTCAAAC 2582749 36 100.0 36 .................................... TCCCTGCTTCGCGCATACGAATAGAAGCTTCTTCGT 2582821 36 100.0 35 .................................... CGTACACGTAGATGCCGATCTGCCAATAGCCTTCG 2582892 36 100.0 35 .................................... TTGTAGTCTTCCACTTACCCTGAATCATATCGACC 2582963 36 100.0 32 .................................... GTTTCCCACTGTACCAAAACCTAACTTACTGT 2583031 36 100.0 34 .................................... CGCTTCATCGGTCATTGTGTTAGCAGTGTTGTTA 2583101 36 100.0 33 .................................... ATTTTATAGGTTGCTAATTTCTTAGCAACCTAT 2583170 36 100.0 32 .................................... GAAACTGGGTGACCCACTCCCAACCCTGAAAC 2583238 36 100.0 34 .................................... CAACTATATATCGCTGTATAAAAAATCAAGAGCG 2583308 36 100.0 36 .................................... GGTATTGACCTGCCAACTCCAGCAGTTCCGGGTCGT 2583380 36 100.0 33 .................................... CCCAATAGAACGAGGACATTACTACAATACGAC 2583449 36 100.0 33 .................................... GACAAACAGTAGAGGTATCATAAACCCCACCCA 2583518 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ==================================== ================== 13 36 100.0 34 GTTTGAATACCGCCCTGATTTAAAAGGGATTAAGAC # Left flank : GAGGTGACTTCAAAATCAACGGACTGGAAAGATCGCAGTGAAAAGTTGTTGGCTTACCAAGCCTTAGAATCCTTGCAGGCGTATCTCATCATTGTGCAAGATAAGCCACATGTGACCTTCTATTATCGGGAAGTGGATGGCGCATGGTGGGTGAGTGCTTATGATGCGTTGGATCAGGTGATTATGTTGCCTTGTATCGACACGCCATTGTCACTGGCTAATATTTACAAAGGTATTGATTTTACGCAACCCGCTGAACCTGAGGCGTAATCATTGCTAAAATTTATAGCGCCATCAGCTCTTATCCGTTACAATAGGCGTATACAGGTACTCGGTTACTTGCCGTTATTTCACAACTGACTTGCTTACATTTGCTGAAAAACCAGTCTAATTGTATTCATTCTACGAGCCTGAAAATGCTAACTTTGAAATACCAATTTGATGTCAAAATTCATACACCGCAAGTTGTTGAAACCAAAGCGTTTCCGACGAACGGCGGG # Right flank : CAGGCGCAGTTGAACTTGATACCGCCCTGATTTAATTGTCTGAACCTTGATTTCCATGATTAAAGAATTAGTGTGATGAAAGAGGACAACCCGCATCCGATTAATCACAGTCATCCTATGAATCACAGTTCAGACAATCCCCGAAGAAACCCCTCCTAACCTCCCCTTATCAGGGGAGGAACAAGACACGCAGTCCCTTTCTTGCTCCCTTCCCTGATAAGGCGAGGGCTGGGGAGGGGTTTCTTTTGCTGACCTGATTTTCTTCCTCCCCCTATACACCCACCCTCCCCCACTGCTATGATTAGCTCAACTTATTAACAAAAAAATAGCTCGGGGCTTCTGATGGGAATCCGTTTATCCTTCCTGCTCATAGGGGCAATACTCGCAGGCGTCGGCCTGTTTTGGGTGCTAGGCACTGCCATTGCATCGTTTGGCCTCTTCCAAACCTTCGCCAGCATAGTGGTCACAGCCGCACTCGGCCTGTTTTACCGCATGGGCTA # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGAATACCGCCCTGATTTAAAAGGGATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.00,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [51.7-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA // Array 6 3757012-3758295 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP072801.1 Thiothrix litoralis strain AS chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ==================================== ================== 3757012 36 100.0 33 .................................... AATCACATCCGCCAACAGTCTGGCGTATCCAGC 3757081 36 100.0 32 .................................... CCGTTGCGCCCTCGACTACCGCGCCATGTTTC 3757149 36 100.0 32 .................................... GTTCAGCAATGTTGCTCCATTATTCCCAAGAT 3757217 36 100.0 32 .................................... TTGTCATACGTCATCCTCCCAAAAGCCGAAGC 3757285 36 100.0 33 .................................... GGCATACGCGGCTTCCATTGCCTCCTCTTCATC 3757354 36 100.0 34 .................................... AAGATTCTATGGATCATTTCATTAGTCCTCAGTT 3757424 36 100.0 35 .................................... TCAGCACCGTACCACGCATTATTTGCTCTGCGATG 3757495 36 100.0 32 .................................... CCACCAACAGCGTCGATTGAATGGCAGAGTGA 3757563 36 100.0 33 .................................... TATTGGCAATGGCATGGCGTTGAATTGTTTTGA 3757632 36 100.0 32 .................................... TCAGGGAGTGGGAATAATCCACCATTAGCGCC 3757700 36 100.0 34 .................................... CTGTATCTCGAACACTCCACGGGAATCTACGTTG 3757770 36 100.0 36 .................................... GATTGTTAATTATTTAACCATGTTAAACAGTGAGGT 3757842 36 100.0 34 .................................... CCTAATGCTTTTGCTTTTTCCTCGTTGGTTAAGG 3757912 36 100.0 36 .................................... CAAAGCCATGTTGCCGCCCTTGGCATAAAGGTATGC 3757984 36 100.0 32 .................................... CGTCTGAATGCGGTACACAAGGCGCGAAAACA 3758052 36 100.0 33 .................................... CATTGTCAACGGTCATAAGCGTGGCTGCGATTG 3758121 36 100.0 34 .................................... GCGTGTTAGGCATTTGGGCGTAGCTTCTGCGAAT 3758191 36 100.0 33 .................................... ACCGATCCTCCCTGCATTAGCCGTACCGTTCTG 3758260 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ==================================== ================== 19 36 100.0 33 CTCTGAAGACCGCCCTGATTTAAAAGGGATTAAGAC # Left flank : TGACTTCAGTCAGCGTTATCACTGACCGTGACACTGGGCAAAACAAAGGCTTTGCCTTCGTTGAAATGTCCAGCAGCAGCGAAGCCCAGAAAGCTATCGACGGCTTGAATGGCACTGATATTGACGGCCGTGGCATCAAAGTTAACGAAGCCAAGCCACAAGCACCACGCGACAATCGCGGCGGCGGCTTTGGTGGTGGTCGTAGCGGTGGCGGCGGTGGCGGTCGCTGGTAAGCAGCCCCCCTCGGCTTATACCGAATAAAAAAGCCCGGCCTTGTGCCGGGCTTTTTTGTGAGGGAAAGAAAGTGGAGAGTGATGAATATTTACTTTAATGTGGCAATAAGTTGTTGTAGTATTGGGGGATCAGCATTGCCCGGCGCGATGCAGCCACTTAACAACCCAGTTTGATCAGTTTTCTAGCAAGGCAACTTTTTATACAGCCCATTTCCTGCTAAGGGTCTCTGTAACCCACTGATTCAAAAGGCCGATTAGACACGAGCC # Right flank : CTCCTTGAACGTCCAGCCTAATGCCTTTTGAAGGCTCTGAAGACCGCCCTGATTTAATTGTCTGAACTGTGATTTTCATGATTATTGTGATGAATCGGATGCGGGTTATCCTCTTTAATCACACTAATCCTTTAATCATGAAAATCCCCCTCAATCCCCCTTTTTCAAAGGGGGAAGCAAGGCAATTCACTTTAAAATCAAATGGATGTGTATCTTGCTCCCCTCCTTTGCAAAAGGAGGGGCTGGGGGAGGATTTTCTTCGGCGCTTTGCGACAGAGTAACCCCGACAGTCTGTAGTCACTTGCTATCGTCAGCACACTCGGCGACAATCGCGCCCAATCATAACTGTTAGGGTATCTTGCGATGACTGTTTCTGTTGCCATTATTTCTGATACGCATGGGCATCTCGACCCGCGCATCATCGAGATCATCCGTGAGTGCGATTACGCGATCCACGCCGGGGATATTTGCGGTGAAAATGTACTAGCCGCGATGCAGCC # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCTGAAGACCGCCCTGATTTAAAAGGGATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.00,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [50.0-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA //