Array 1 674203-672221 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP063232.1 Thermobifida fusca strain UPMC 901 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 674202 28 100.0 32 ............................ GTAGGTAGCCCCCGACTCCAGCGGGATGATGA 674142 28 100.0 33 ............................ GCTTATGGAAAACTAGCGCGACAACCTCGGCCG 674081 28 100.0 33 ............................ GCCATGACGCGACCGCCACCAACAGCGCCGCCA 674020 28 100.0 33 ............................ GCAATGCCGTTCCGCTACCGCTCAGACAGTGGG 673959 28 100.0 33 ............................ GCTGAAATTGCTCCAGGTCGCCGCCCGGCGCGA 673898 28 100.0 33 ............................ GTAGGCAAGGGGAAAGCTTGGGGACCAAAAACC 673837 28 100.0 33 ............................ ATCGTCCAAACGATCAGCTTTTGGTTGGAATTC 673776 28 100.0 33 ............................ TACCCAACGCCGTCTTGCGTGACTACCGCCTAT 673715 28 100.0 33 ............................ GACGGAACACCGCGGAGAGCGGAACGCGGAATA 673654 28 100.0 32 ............................ GAATACCGTGCTGACGCATACCAGCTAATTAA 673594 28 100.0 33 ............................ GCTGCACATTGTGCGGCTTGAAATTGTGGATGT 673533 28 100.0 34 ............................ GTAGCTCCAGCCCGGCGGGGTAGTCCCGCTCGTC 673471 28 100.0 33 ............................ GACCACAGAAAGGTTGCTCATGGGAAAAACCTG 673410 28 100.0 34 ............................ GGGGGAGCGCGGCCGCTACCGCGCTCCCCCTCCT 673348 28 100.0 33 ............................ AATGGCTCGGGGAGGTCGGCGCCGCGGCTGGCC 673287 28 100.0 33 ............................ GCCGTGGTGGCGGACCGGGATGGTCCCCCCGAC 673226 28 100.0 33 ............................ ATCCCGCACAACATTCGGGCTAGTGTCTCGCAC 673165 28 100.0 33 ............................ GGCTGTCCACATGGTGCGGGGGATGCGGAAATG 673104 28 100.0 33 ............................ GCCTCGACTCCGCAGTGCGAGTGCTTCGTTGCG 673043 28 100.0 33 ............................ TTTTCAGCCCCCGACTACGTCCCCACGCGCGAA 672982 28 100.0 34 ............................ GATGAACTGGGCCGCCTCCAGGGCGGAGAGCTCC 672920 28 100.0 33 ............................ GACGTCGGGGATGGTGCCGTCGTTGATGGCGTT 672859 28 100.0 33 ............................ GCCAGGGCGGCGAGCCGATCCAACTCCGCCGTC 672798 28 100.0 33 ............................ GCTCTGCCTGCTGTTCCTCGGTGAGCCCGTCGT 672737 28 100.0 33 ............................ GCCACTCTGGAGGATTCGCAATAGTGATCTTGT 672676 28 100.0 33 ............................ ACCGCAAACGCCCGCCCCAACTGGGCAATGCGC 672615 28 100.0 33 ............................ TTTGACGGCCGTTATGGGATCGCGTTTTCTGCG 672554 28 100.0 33 ............................ TATTGAGGCGGAGTTGGTCGCGGACCGGCCCGA 672493 28 100.0 33 ............................ GTGTTCTCTGTCGCGCTACTGCGAGAGCGCTCC 672432 28 100.0 33 ............................ GTTCGCCCAAATCCCCAACGCGGTTCTCCGGGA 672371 28 100.0 33 ............................ GCCGCACACAGCCGCAACAACCCCCCATCCTGG 672310 28 100.0 33 ............................ GCGTAGCTCTGCCCTACTTGGTTGGGGAATGGT G [672289] 672248 28 89.3 0 ................C......A.G.. | ========== ====== ====== ====== ============================ ================================== ================== 33 28 99.7 33 GTGAGCCCCACGCACGTGGGGATGGACC # Left flank : AGAAGGTTGGGGGTTCAAGTCCCTCCGAGTGCGCCACCTGTGACTGAAGGCGAGCACCTGAGAGATGCCTGCCCTCAGTCGTCTGCTTCAAGGATCGCTTCAGCAATTGCTCCGGTCTGCTGAAGCCGGTTTCCATCCCATCACTCTTAGGCGTTTCTCTGGGTCGCTGTTCCCCGCGTCTTCACATCAAACATGGGTGTGTGCTTCCCATGCACCCCGTATCGATAGGGATTCGAGCCTGCGCGGCTGGTATCGCTGCGGCCTGGAGACAGCATGGGGACGCACCAACCAGTCGTGACGCCTCCGGAGTGATAACGGTGCTCACGGCATCGCCTCTTCAACCCCCTGGGGCCACCAGCTGTCGCCAGGCTGCGGTGATCAGTTGGGTTCGAGCCCTGATCAGATTTCTGGAAAACGGTCTAGAGTGTCTTGTGTGATGAAGCTGCCCACGCCTTTGATAACGAGGAGATAACGTCTCGTAAATCTGCAGGTCAGCTTCT # Right flank : GAGCTGAGACGAGGGCGGGAGAACAACAGTGCGGGTGGGCTGTCCTTTCCCGCTGTGCAGAGCTGGGTGGGGGAGAGGACGAGTCAGCAGACAGTGTGGAACGGGCGTACGCCCTCAGGCGCTCTTTCAACGCTGAAGGCCCAGGCTCGGGATGATCTCCCTGACCTGGGCCTTCGCTTGTGGAGCGGATGACGGGAATCGAACCCGCGTCTTCAGCTTGGGAAGCTGAGGTTCTACCATTGAACTACATCCGCACTGGTGGCGATCTCGCCTACGGCTAGGCTATCACGCTCGGCGAGTTCACCGATAAGAATAACCATCTCGGCGAAGCTTGCAAGGGGAGAGCTGCCCTGCCGAGGTAGGGAAAACACAAGGTAGATTCTTTACTGTGCTTCTCTCCGACCGTGACCTTAGAGCCGCCATCGAATCGGGGCGGGTCAAGCTAGACCCCTACGACCCTGAGCTTGTCCAGCCGTCGAGCATCGACGTGCGGCTGGACC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGAGCCCCACGCACGTGGGGATGGACC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-10.60,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [35.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.42 Confidence: HIGH] # Array family : NA // Array 2 969402-966499 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP063232.1 Thermobifida fusca strain UPMC 901 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ======================================= ================== 969401 31 100.0 39 ............................... ATGTACAACCACCAGTCCGACTCCACGCCCGTGTCCCGG 969331 31 100.0 36 ............................... ACGAGCGCCACCACCCTCGACGACGTCGAGCAGACG 969264 31 100.0 37 ............................... ACGAGGCGGGGCTGAGCGCCGTATCCCCAAAATTGGG 969196 31 100.0 36 ............................... ACCAGAGCCGTGGGGCGAACAGGGCAAAACGGCGAC C [969185] 969128 31 100.0 35 ............................... ACGGCCGCCCGGTGCGGGCCCGCGCTCTCGCCCGA 969062 31 100.0 36 ............................... ATGCTCGACAGGTCGGCGACCAGTTTCTGCAGGCCA 968995 31 100.0 38 ............................... GCGATGGATGTGCCGACCTCGTCCGGGTTCAGACCAGG 968926 31 100.0 37 ............................... ACGACGACTCGTCGCTCTCGTCAACCTCGTCCCCCGC 968858 31 100.0 36 ............................... TCTACTACCCCCGATCCCGGTACCTGGCTCATGGGC 968791 31 100.0 35 ............................... TCACCGGCGTGACGGTTGTGACGGTTGTGTGACGG 968725 31 100.0 36 ............................... CTGGCGTGGCAGGCCCGCCAGCTGGGGTGGAAGCCG 968658 31 100.0 36 ............................... ATGCCGCCGATGCCTCCCTGCCACACCGCACACCGG 968591 31 100.0 36 ............................... TCGGCTGCGGGGAGGATGGCTCCGTAGGCGACTCCG 968524 31 100.0 36 ............................... TCGGGCGGCCAGGCGACAATCTCGCGCTCCATGACG 968457 31 100.0 37 ............................... GCCAGGCCTACGCCGACTATCTCCGCCGCACCAGGGG 968389 31 100.0 36 ............................... TGGTTTTGCCGTGCCCGGGACGGCCCGCGATCACCA 968322 31 100.0 33 ............................... TGGCCGTAAACGGCACTAACGTACGTACGCAAA 968258 31 100.0 36 ............................... ACGATCTCATCCGATGTCACGGGCCGCTGGTGCTGA 968191 31 100.0 35 ............................... CGAGTCGGTGAGCTTCACCGGTGAGGTTGTCCCCG 968125 31 100.0 34 ............................... TTGCCCAGTGGTGGGCTGAGGACGAGGATGGGCG C [968114] 968059 31 100.0 36 ............................... ATGATGCCTCCCCGTCTGCGTGGACTCAGGTGTCTA 967992 31 100.0 36 ............................... ACGAGCAGGGTGAACGGGTCTTCACCGAGGCTGATG 967925 31 100.0 33 ............................... GTGCTCCAGGCGTTATTAAGAACACTGATACGA 967861 31 100.0 35 ............................... GGGCGGAGGAGTCCGAAATGGATCTCGCCGCGACG 967795 31 100.0 36 ............................... GCCGTAAAACGGTCGGCCCGGTAGCCTCGGCCAGCC 967728 31 100.0 36 ............................... GCCGTAAAACGGTCGGCCCGGTAGCCTCGGCCAGCC 967661 31 100.0 34 ............................... ACGGCATCTGGCCGTCGATTCGCTCCGTCAGCAG 967596 31 100.0 34 ............................... GCGCGCCCGTGGCTGACGCGCGCCACCGAGGAGT 967531 31 100.0 33 ............................... CCGCAGATGGCGTGGGCCATGCGAGCGCACCCG 967467 31 100.0 37 ............................... GCGCGCTGCAGATCCTGAACCGTGGAAAACCCAGGCA 967399 31 100.0 37 ............................... GCGCACCTTGACATTCCGAAGCACACCACAGGACCTG 967331 31 100.0 35 ............................... GAGATTGATGAGCGGCTGGAGCAGGTGCGCTCCGA 967265 31 100.0 36 ............................... CACACGTAGACGGTGCGGCCCTGCTCGGCCGCCTGA 967198 31 100.0 35 ............................... AGCAGTGCCCAGACTACGTCCCAGATGATGCCCGG 967132 31 100.0 36 ............................... TCTGGTGCGCATCCGGCCATGCAGTGCAGCAGCGGT 967065 31 100.0 36 ............................... ACTACTACCTGTCCCTGACCCCCGAGGAGCGCGACA 966998 31 100.0 37 ............................... TCGACGAGCAGCCCCGGCGTTCCTCGTCGACGTCGAG 966930 31 100.0 36 ............................... TCCACCGTCACGGTGGTGGTCGGCTTGGGTAGGCTG 966863 31 100.0 35 ............................... TGCCGCTGCTCGTAGGTGTGCTGGTGGCGCTAGGA 966797 31 100.0 36 ............................... ATCAGCAGCGCGTCCCCATCAGCGGGCGCTGGTCCG 966730 31 100.0 36 ............................... CAGATCAGCCGATGGTCACGCGGCACCACCCGCCCG 966663 31 100.0 36 ............................... AAGCGGCGCAACCAACAGAGGGTTTCCCATGGGAAG 966596 31 100.0 36 ............................... CCTGAGGATGGCATCGCGGCGGGGCGCATCCTGCGG 966529 31 96.8 0 ...........................G... | ========== ====== ====== ====== =============================== ======================================= ================== 44 31 99.9 36 GTTCCTCATCGCCCCTAAGAGGGGTAGCAAC # Left flank : CAATCGCTCTGTCGCCTACGACGAGCTCATCTATCTTGAGGCGCTTCGGCTTACTCGAACCTGTCTCGAATCCGCTCCTTACAAACCTTTCCGTATCTGGTGGTGAACAAAAATGCACGTTGTCGTCGTCTACGACACCGCTCAGAAGCGCAACCCGAAGATTCTACGAACCTGCCGCCGTTACCTGCACCACGTGCAGCGAAGTGTCTTTGAGGGGCAGCTCTCACCGTCCCAGCTGCGCCGTTTTCAAAGTGATGTCGGAAAGCTTCTTGATCATGGGCACGACCATGTCATCATCTACACGCTTCCTCCTGGCGCAGAGATTCAACGTCATACCATCGGAGTCAACAAACCAGCCCCCAGCGATATCTTATGAACCATTACAACGAACCCTGTTTTCAGCGACACGCCGGGGTCTGCTGCACTACCGGAGGTTCGCTGAAAAAAGTCGCCGAAACCAGCCCTTAGGGCTAAGATTGACCAGCGACTTTACTCTCGGG # Right flank : ATAACTTTCCATCTAAAGAAAACCTGATCGGAAACCGAGACTGTGCGCGATCACCCGCAGCCCGAGGCAGCCACCAGTCCTCCCCCACTCAGCCTCCAAGCCCGCCGCCACTACGGCGCAGCCCATCTCCTCGGGCCCAGGCTCTTCACCACGCTTGTCCCCGACATGCACCACTTCAACGTCCGTGGCAGCTGAGTCTTGCCTCTGCTACACCCCGATGGTTCCCTGAATCTTGCTCCTGGGCTACTGGGTTTCCTAACTCGCCAGATTGAGGCCCGGTGACCGCGCTCGACGTGGCTGCCTACATTGCCGCTGCCGCCGCCCATCCTCCTTTACCGAGCACTTCGCCGACGAACTCCTCACCCCCTGGGGTGCGTAATTCCTCTCACGGCCAACATCGAGCTGTGGCATGAGGCAGTTGCCCCCGGCCATGAAGTGCTTTGGGCAGCCACTTACGGACACGCCTGCGCTGATTCCCACGCAGGACGCCCCGAGGGGAC # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCCTCATCGCCCCTAAGAGGGGTAGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.20,-8.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [51.7-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,0.74 Confidence: LOW] # Array family : NA // Array 3 1060966-1060815 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP063232.1 Thermobifida fusca strain UPMC 901 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1060965 29 96.6 32 ............................T CCCTCCCGTCAATGGGGCGGTCGCCAACCCAT 1060904 29 100.0 32 ............................. CTGTGGATGATCGGGGGAAGGGCTGAGCTGTT 1060843 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 3 29 98.9 32 GTGCTCCCCGCGCACGCGGGGATGATCCC # Left flank : CCCCCTGCCACCGGCAGATGTGCAAGTACCCCGGAGTGTCCGCTAGACTGTCATCAGTGTTTCGGGGTGTGGCGCAGCTTGGCAGCGCGCTTCGTTCGGGACGAAGAGGTCGTGGGTTCAAATCCCGCCACCCCGACCACAGCGACACTGTCGCATAAGCAGAGGTCAAAGAGGGTGGCCCCAGGGGATCCGGATTCCTGGGGCCACCTTCTTTGCTGTGTGTCCGTGCGTCACACGTGCGTCAAAGGTCTCTGGTCGCATCCCTGCGACACTTCGCACCGTGGCCCCTTGAGGCATGGACTGCACCAGCATGCTGACTACCGCGGACTGCCCGTCCCATGCCTCGCAGGGACGTCTGCCTGCCGAACGTAGACGGGCAGCGGTAGCCGCCCACGGCGGCGCTCCCCGGACGGGCACCCCACCCCACAATCCCTCCTGTACGATTTTGAAAAGTGAATGAAATCAGCGCCGCGCGTTAGTAAAGTCGCAGGTCGTCTAGT # Right flank : GCAATAGTGTGCAGGGTTAAGAATTCGCCGATCCAAATCCCACTGTTTCGATTACAGCGCCAAGCTGTATATCAGCGCAGAAAAAGGTTGCCCTAGAAATCCATTCCTTCTAGGGCCATCTTTTTATTCTCACACATCGCCGTTTTCTGCCTTGCGTCGATGTGTCTACCATGCCACGCGGGCACAGGGAAATACGGCTGGCTGCGGCAGCTTGCTCCGCTCTTATCTGGATGCGTTAGCAGAGCTCTTGTCCCACCGAGATCAGATCGGTGATCGGGATCTTCGAGATGAAACTGCCGTCGCCTCCCGCTTCCTCTATTTCCTTAGCGAGTTCGGTGTCGTCGGCCCACACAGGGTCAATGGGCTGGGCCCCTCGAGCCTCGGCAAGACCGTTCACCGCGTAGACCGTGCCGTCCACGGTAATGGTGATCGCTTCATCCTCGCAGCGCAGCTCACCCTCGTCGACGGTCAGCGGCCACGTAAGATCACGTTCCTCGAAC # Questionable array : NO Score: 5.31 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCACGCGGGGATGATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCACGCGGGGATGATCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-14.10,-14.10] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [51.7-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.5 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 4 2394743-2396847 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP063232.1 Thermobifida fusca strain UPMC 901 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ================================ ================== 2394743 30 96.7 31 .............................A CGACCCCGATACCGCTGCTGGCGGATGGTGG 2394804 30 96.7 31 .............................T TACTGGCCACGGGGAAGTAGCGTGTGTCGAG 2394865 30 93.3 32 ............................TC AGATCCATGTCATAGCGGAGCCGAGTTACGAA 2394927 30 96.7 31 ............................T. GTTTGGAGGGTTGTTCACGTGATCGGCGCTG 2394988 30 96.7 30 .............................C CCCACTCGCCGCAGTGGGGCTTTTTGTGCC 2395048 30 100.0 31 .............................. GCGGTGCGCTCGGCTTCGGCCGGGGTGGCCT 2395109 30 93.3 31 ............................TT ATCGGACTAGGGACACATTGGTACAGTTACC 2395170 30 100.0 31 .............................. CCTTCGGTGGGATGCCCTTCGCGCTGCAGAG 2395231 30 96.7 31 .............................T CCCCGAATGGGGTGGTCGCGTTCGTATCCGG 2395292 30 96.7 31 .............................C CGGTGGACTGGCTGTGCCACAGGCGTCGTAG 2395353 30 93.3 31 ............................AC CGTTGGCAGCATCGCGATGATCGACGTGGGC 2395414 30 96.7 31 .............................C CTGTCGTCGACCGGTGCCCGGCGGCTGCTGG 2395475 30 96.7 31 .............................A GCCCCACACTGCGAGTGGGGCTCTGGGATCG 2395536 30 96.7 31 .............................T TCCGGAGTTTCGTCACTGAAAACCAGCCACA 2395597 30 100.0 31 .............................. AACATGTGGCTAGCCGCTTCACACTGGGGGA 2395658 30 93.3 31 ............................TA CGACATCTGTAGGAGGTGTCAAGTTTTTGGT 2395719 30 96.7 31 ............................T. CTAGCGAAGCTCGGAATCCGCTACTCGGAAG 2395780 30 96.7 32 .............................C CCATCCAAACCGTACAGTGCGGCGTAAATGTC 2395842 30 96.7 31 .............................A ACGAGGTTGTGTCGACAACCCACCACGAGCG 2395903 30 100.0 31 .............................. CACACCGCGGTGCTGGACAGGGTTGGGGATC 2395964 30 96.7 31 .............................T CAGACCGTGGCTGACGCTACCCCCGGGGAGA 2396025 30 96.7 31 .............................T CCGCGCACCTGTTGGGTTTGGTGGCAGTGGT 2396086 30 93.3 31 ............................AC GGGTCGTGTCCCAGCTAGAGATTGATGTGGC 2396147 30 96.7 31 .............................T CGAGGCGGAGCGTGCTCGACAACACAACGTC 2396208 30 96.7 31 .............................A CGGTAGCGGCGTACGCGGTGGAGAACTGGAA 2396269 30 96.7 31 .............................C GCTCCACCTCGACGTCAATGAGGCCAGCCTG 2396330 30 96.7 31 .............................C GATGCCCGTCATCGCGGAAGCCAAAAACACC 2396391 30 100.0 31 .............................. GCCAGTGCGCACCTCGCGCACCAGCTCGACG 2396452 30 100.0 31 .............................. GCGCTGTGTGGTCCCGTTCGTTCCACGGCAC 2396513 30 93.3 31 ............................TC CCCGCAGCATCCAGGCTCGACCAGGACTCCC 2396574 30 96.7 31 ............................T. CACTGACGACACAAACAGCGATTATCCAGCT 2396635 30 100.0 31 .............................. TCCGCTGCCGCACCCGCAGCCACGGAACCCC 2396696 30 96.7 31 ............................T. AGGTCGACACGCTGGAAACCGATGACAGCGG 2396757 30 96.7 31 .............................C ATCTCGCCGGGCTTGTACTTGCCTCGCTTGA 2396818 30 90.0 0 ..............G........A.....A | ========== ====== ====== ====== ============================== ================================ ================== 35 30 96.6 31 GTGCTCCCCACGCACGTGGGGATGGTCCGG # Left flank : AGCGGCAATCCGGGCGGGGCGCCGTGTTGCGTCAGCAACTTCCCGTGTCCGTTCCAGCAGCATGGCGACCTCCCATGTCGACTAGCCTTCCCTCTACCCGGCGGCCACGCTGAAACACGGTCGTCCCAGGGCTGGCCTTTCGGAGGCGAGACCAGGACGTCTGCGGACAGCAGACAGTCCCAGGAGCATTGCGAGGATGCCAACGTCGCTTTCCCCGCCAGTGATCTGGCGGCAGGCAGAACGACGCGCTTCCACCGGACAGTCGGTTGCCGTCGCCGCAGGCCGATGGGTTTGCACCCCGCCTCAACCTAGAAAGACTGTCCCGGTCCTGCTGTGATGAATCCCAGCGGAGGGCAAGGCCCGGCCAGTGTCAGGCAATTGGCTGCCCAGAGCAGAGATTCCGGCTAAATTGACCTATGCGAGCGGTGGGCCGAACCTCCTGATACCCAGAAGATTGATAACGAGAAGATAACGCCCTCTAAAACTGCAGGTCATCTTCT # Right flank : ACATGCCTCTAGGTACGAAGGTTCTCGTGGGGTTGCTAGCTGCAGCGCAATAGTGTTCTTGTTGTTCGTGGCTGGGTGCGCTGCCGCTATCGTCTCTCTACCTGATAATCCCGACCGGGGACAATGAGAGCTCGACCGAAACGCCTACTCCGCCAACTGAGTCACCGAGTCCGGAACCCAGTTGAGGAACCCAAAACGGGAGATGATCCTGAAGAGATCGGTTTGAAGAACTTGGGTTTCCTCTAAATCCTGAAAGTGTGGTGCACAGTGATTATCTAAATGCTGTGCGCGAGATTGTGCGGGGTTGCGGCCCTCGATGCGGATTCGATTGTGGCCTGTCGCCTAGATGTGTGTTGGATTTTTCTAGACGAAGGAGAGAGAATCTTGGCGCTATATTGAACAGGTCTAGCTGTACGAAGACTTCAATTACGGGGCCATGCTGACTTTGCTGGAGGAAGTAGAGCAACTGCTAGATGTAGTGCATGAGCATCTCTATCCCT # Questionable array : NO Score: 5.35 # Score Detail : 1:0, 2:3, 3:0, 4:0.83, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.26, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCACGCACGTGGGGATGGTCCGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCACGCGGGGATGGTCCCG with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.20,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [58.3-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 5 2466196-2464454 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP063232.1 Thermobifida fusca strain UPMC 901 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 2466195 29 100.0 32 ............................. GCCACGAGCCAGGTGTGGGAGACGTGATCAGC 2466134 29 100.0 32 ............................. GGAGGTCGCGTTTTCGCTGGTCACGGGCGTGC 2466073 29 100.0 32 ............................. CAGGCGCGCGCCGGACAGTCCGGGAAAACCGC 2466012 29 96.6 33 ............................C GGCCACAATGGTGGTGGCGATTTTCCCCACCAA 2465950 29 100.0 32 ............................. CAGGCGCGCGCCGGACAGTCCGGGAAAACCGC 2465889 29 96.6 33 ............................C GGCCACAATGGTGGTGGCGATTTTCCCCACCAA 2465827 29 96.6 32 ............................T ATCAGGTTTCGGGGACTGGTTCTGAACCCACG 2465766 29 100.0 32 ............................. GGCCGCAATGATGGCGAACATCGCGCGACTCC 2465705 29 100.0 32 ............................. CGCGCCTAAGGGCGACTGGTGGTCATAACCCA 2465644 29 100.0 32 ............................. GCCGGACCGCCGTCGAGCAGTTCGCCCAGGGC 2465583 29 100.0 32 ............................. GCTCACACTGGCACTTCCTTAACCTTGTCGTG 2465522 29 100.0 32 ............................. TGCCCGGTCATATTTGGCCACCGCGGCCTGAA 2465461 29 100.0 33 ............................. CGCGGCTGGTTGCCTCCGCTGGCCTGGGACGAC 2465399 29 100.0 32 ............................. TGACGATTTAGAGGTTGATTCTGTATTAGCTA 2465338 29 100.0 32 ............................. TTCCGGGTTGATGTTCACTCGGCATCCTCCGT 2465277 29 100.0 32 ............................. GTCGGTGACGACGGCCGCGACCATGCAGTGCG 2465216 29 100.0 32 ............................. GGCACCACTGGTGAGACGTCGTCGATGGCGCA 2465155 29 100.0 32 ............................. GTCGCCGCTGCCCTTGAGCTCATACACCCACA 2465094 29 100.0 32 ............................. GTCGGCGAGATCCTGAGCGTCGCCGTGGTTGG 2465033 29 100.0 33 ............................. GAGAGCTGATGATCCGGGTTGTCATCACTACCT 2464971 29 100.0 33 ............................. GCGCTCGAGCGGTCCCGGTCCTCGGTGACCGCC 2464909 29 100.0 32 ............................. GCCGTGGGCCTCGTTGATCTCGGCGGCGAACT 2464848 29 100.0 32 ............................. TCGATCCCGGCAGCGTTGTAATCGGAGACAAC 2464787 29 100.0 32 ............................. CGCGCCGGTCTCGGACCACGGTGCCGCGGCGC 2464726 29 100.0 32 ............................. GGATACAGGAGGTGATCGCGTGAGGATGACGT 2464665 29 100.0 32 ............................. AACGATCTTCTCGCTGCTGGTCAGCCCATTGG 2464604 29 100.0 32 ............................. CACGTAGTCGAGCGCGAGCGCCTCGGCGGCGT 2464543 29 100.0 32 ............................. CGGGGCGTTTCTTTTCTCGAACGGGTCCATCC 2464482 29 72.4 0 A..CT....G.A.........C.A.G... | ========== ====== ====== ====== ============================= ================================= ================== 29 29 98.7 32 GTGAGCCCCACGCACGTGGGGATGGACCG # Left flank : AAACAAGAAATGACTTCACCTCAAGGAGCCATTGCCTATATCCCCCCCACATGACGTGGCCGACGGCTCTCTTCGAGTTCGCTGACGACGCTCGTACCTGCCCCATGGCAAGGAAGACAGTCGTCGGCGCCGTCAATCCGCACTGGCGGTACGTACCGCGGATTACTGCGAGTGGTATGGCAGTGTGGCTGTCGGCCCTCCCCCTCATGGACACGCGTCTGCTTGGAGCGGATCGCGCGGGGAAGTCCTTGCGGGCTGTGGAAGAAGTTCGAACAGGCTCATGCCTGGTGAGTCCAGCATGGCTGTCCAGAAGTGTCGGGGTTCGGGTTGACGGTGGGGCCGCGGAGTCATGTGGTGTGGCCCGGTTATTCAGGCGGCCCTCATGTCACCATTGAGGGGACGATGCTCGGGAAAACGGTCTAGAGTGTTGTGTGCAGCGAAGCTGCCCACAATCCAGATAACGAGGAGATAACGCCTCGCAAAATTGCAGGTCATCTTCT # Right flank : ATTTGTTTCGTTCTGTGTGAGCGAAGGTGGGAGGTAATGCCTGGGGTTTGAAGACGGATGTTTTCTCTGCGGACGGCTTTAGCGCTGGTCGTTTCCTGGGCAGCTGGTTTTCGCGGGCGAGGCGGGCGCCTACACTCCGCGGAGCCAGCGTCCGGCGAGCGTGCCGTCCGATTCCACCAGCAGTCTGGGAACAAACGTCCGTTCGAGCGGCTTACCGGCAAGTAGTCTCAGCCGGTCGCCAGCCACGATGCGGGGTGCGAGCGTCAGGCACAGCTCGTCCACCAGGTCGGCGTCGACCAGGTCGTGCATCAGGTGCGGTCCGCCTTCGCACAAGACCCGGCGCAGGCCCTGCTGGGCGAGCGCGTCCAGTGCGGCACGGAGGTCGACGCGGTCCTCTCCGAGCACGAGGACCCGGTCGTCGCCCAGCGCCTGGCGGACCTCGTCCAGGGCAGCGGAGTCCGCGGCACGGCAGGTGAGCAGCATGACTTCGCCGGCGTCCT # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGAGCCCCACGCACGTGGGGATGGACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-10.60,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.15 Confidence: HIGH] # Array family : NA // Array 6 2642108-2639082 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP063232.1 Thermobifida fusca strain UPMC 901 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ =================================== ================== 2642107 28 100.0 33 ............................ GGCGGCGAAGCTGTTCAGGGAGCTCGGCATCGA 2642046 28 100.0 34 ............................ TGTCCGAGCCGCCCCATCCGGGCGCTGGTCCATC 2641984 28 100.0 33 ............................ GACGCTGGCCGCGATGCTGGGCCGTCACCGCAA 2641923 28 100.0 33 ............................ TCTCCGGACGGAACCCAGAACGACCACACACCC 2641862 28 100.0 33 ............................ CACTAGCGTGGACGCGCACGCCAGGAACGTCCC 2641801 28 100.0 33 ............................ TCCTCATCGTCATCACCGGACACGTACCGGTGG 2641740 28 100.0 33 ............................ CCCGCCTCACCCAGGCGGGCTTGGGGGCACTTC 2641679 28 100.0 34 ............................ GCTGGATCCGTTGTTTCGTGGCGAGGTGGACGGG 2641617 28 100.0 33 ............................ GAGCATTGTCAGCCGCTTGACGATAGCTTCAGA 2641556 28 100.0 33 ............................ GGGAAACGGCCGGGATGCAGCCCCGGCCGAATC 2641495 28 100.0 33 ............................ GCAACCGAACGTACTCAAGTCCGCGCTCGGCCA 2641434 28 100.0 33 ............................ GCAGCGCGTGTGTATAGCGATGCCCTGGCCAGG 2641373 28 100.0 33 ............................ GACGCGGACAGCGGCGTCCGAGAGCCCCGGCAT 2641312 28 100.0 33 ............................ GGCGAGCGGGCCGCTGCGTCGGCTCTCTCAGGG 2641251 28 100.0 34 ............................ GGACTGGGTTATCAGGCGGATGAGCCCGGTCAGC 2641189 28 100.0 33 ............................ GGTGCGACCCTGATCCCGAGTCTCATTACGACG 2641128 28 100.0 34 ............................ GCCGCGTACCCGAACCCGTTGGAGATGGTTCAGG 2641066 28 100.0 33 ............................ GCACCGCAGTGCGCTCCGCGCCCAGCAGGAGCG 2641005 28 100.0 33 ............................ GGAGCAGCAGCAGGATGCTGAGCAGCTGGTGAA 2640944 28 100.0 33 ............................ GGCCAGCGGGGCGCGCTGGCTGATGGGTGATGA 2640883 28 100.0 33 ............................ GTCCTCCCGGTACACCCCGAGCACTACGTCAGC 2640822 28 100.0 34 ............................ GATGTGGAGCGCGGCATCCTGCCGCGCGGCAGCC 2640760 28 100.0 33 ............................ GCAGCCTGATGAACTGCGCGTAACCCGCACGGT 2640699 28 100.0 33 ............................ TAATATGGTCGCATGCTGATAGCTAGACACACC 2640638 28 100.0 33 ............................ GCACGCAGACACGATCCGGCCTGTCATCAGGTT 2640577 28 100.0 33 ............................ GCACGCAGACACGATCCGGCCTGTCATCAGGTT 2640516 28 100.0 33 ............................ GGCGGCGTAGTCGATCTCATCCCCCGGGCCGAA 2640455 28 100.0 33 ............................ CGGTTCCTCACCGATCCCGGCGACAGTGCTGAT 2640394 28 100.0 33 ............................ GCTGTGGTGAACCAGCAGCTCACGCACTCGGGT 2640333 28 100.0 33 ............................ ACCTCGAGCGCCTGGGTGCCAAACAGGTCCCCA 2640272 28 100.0 33 ............................ GATCGCGTCCTGTCCACCAGCCATCGCCACCTC 2640211 28 100.0 33 ............................ GTAAACGCGGTCCCGTCCGTGCTTGGCCCAGCG 2640150 28 100.0 33 ............................ GAAAACGGACACAACGCGACCGCTAGCGCGCAC 2640089 28 100.0 33 ............................ GCACGGAGCGTGAGGGAGTGTCTACAGCGAGTC 2640028 28 100.0 34 ............................ GCGGTGCCGTCTCAGGGTGCGCGCCGAGGTCAAC 2639966 28 100.0 33 ............................ GCTCGGAACCGTGCTCAACAGCGTTCGCGACGC 2639905 28 100.0 33 ............................ AGTAGATGTAGACAGTGCAACTCACAGTCTGGC 2639844 28 100.0 34 ............................ CTGTCGGGTTTCGGTGTGTCCTAGGGGTTGCGGT 2639782 28 100.0 33 ............................ GACCTCGCCCTCGGTGCCGACGGTGTAGTAGAC 2639721 28 100.0 33 ............................ GCATTCGATCTATTGACCGCTGGCGCTACCGCG 2639660 28 100.0 35 ............................ AGTTGGGGCCGATGGCCTCGTGTGTGCGCTGTCCC 2639597 28 100.0 33 ............................ GGAGGAGCACCCAATGATCCGGGTTGTCATCAC 2639536 28 100.0 33 ............................ GGCCTAGGCGTCCTCAATATCTCAATAGGGTTA 2639475 28 100.0 33 ............................ GCCGGCCGGCGATCTCGGCGGCTTCTTTGCCGT 2639414 28 100.0 33 ............................ GACGTTTACGCAGATCACAGCGGGGTAGCGTCC 2639353 28 100.0 33 ............................ CGCGATGCTGCCAACGGTTTCGCTCACCTGTTC 2639292 28 100.0 33 ............................ GGGGTCGACGAGGTTCGTCCAGTGGCCGTATGT 2639231 28 100.0 33 ............................ GCGTGCTCGAGGTGGAGTCGACGAGGGTCGTCC 2639170 28 100.0 33 ............................ GTCGACCGACGAGTTGACCAGGGCGAACACTCG 2639109 28 96.4 0 ..........................T. | ========== ====== ====== ====== ============================ =================================== ================== 50 28 99.9 33 GTGAGCCCCACGCACGTGGGGATGGACC # Left flank : GAGATCGCCTCCCTCGCCCTCTTCCTCGCCAGCGACGAAGCCGCCTGGATCACCGGGGGCATCTACCCCGTTGACGGCGGACGCGGCGCGGTAGGGACCATTCCCACCGACTGACCCTCGTGGCAGCCGCCCCAACTGCTTCCCCATCGTCAATCCGAAGGCGGCTGTTGAGGACGGTATCGATCCGCTATTCAGCGCGCAGCGGACTAACGGGTGCGGCAGGCCCTGCCGGTCGTTGCCGCGCGCTACCAACGCACTAAGGGAAGCGCGGGATGCTCCTCCCCCGCTTCCCGCCACTGATATTCAACGGCTTGAAGATAGCCCGTGAATCCCCACCCCAGCCAACGGACAACAGCCATTCTTAAATACACACAAAAAGGACAAATCAGTCGCGAGAGAGCGCATCCACTGAAAACGATCTAGAGTGATCTGTATGATGAAGCCGCCTGCAAGATTAATAACGAGGAGATAACGCTCCACAAAATTGCAGGTCAGCTTCT # Right flank : GTCAGTGAACTGTGTCATAGAGACGACCGGGCCGCTGTCCCCTAGCCGGAACTATTGGCGCTCTGCACTAAGACGACAGTGCATAGCGGAGCACACACGAATCGCCGGCATAGTTCGGGAACGCTGTCCACTCTTCCCGTAGGTAATGCCGTTCCCGGAATCCGCGCTACGAGAAGAGCGGTCTTTGCTTCTTCGCGCCCCAGACCGACTTTGCGAAGTGATTCCTGGTCTTGTCAGCTCACCCCAGTATTCCTGCCTCGATCCTTGAGCTGCGTCACACCCACTTTTCGTGGAGGGCGTAGAGGCGACTACCTCTCAGGCAGCTTTCGGACCTTTCGGCTCCTGCGGTTTCTCCCCCGCTGCCAGGAGCAGACAGGCCTGGACGCGTTCACCCCGTGGCTGCTTGGTCATGGATGGTGACGGTGTTGTGGGCTGCTACTGGTCTGCCGTCGAGCAACGGAGCAAGGAAAGCCATCGAAGCGCGCAGGTCCTCTACCCCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGAGCCCCACGCACGTGGGGATGGACC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-10.60,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [40.0-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.42 Confidence: HIGH] # Array family : NA // Array 7 2744476-2745238 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP063232.1 Thermobifida fusca strain UPMC 901 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 2744476 29 100.0 32 ............................. CATTCGAGGGCGTCGACAGCGCAGATCCGCGC 2744537 29 100.0 32 ............................. CTCCCTCACTTCCGGGATCGTCCTCTTCACGC 2744598 29 100.0 32 ............................. GATACGGTTCTGACGCCGCAGTTGTCTATGGA 2744659 29 100.0 32 ............................. CTCGTCGCCCCCGAACCGGTCCCGCTCGACCC 2744720 29 100.0 32 ............................. GGATGCTGCCCCGCCGGACCTGGGCCGCGACC 2744781 29 100.0 32 ............................. GGATGCTGCCCCGCCGGACCTGGGCCGCGACC 2744842 29 100.0 33 ............................. TGCGGCGTGATCTGGAGGTCCTGGACCCCCACC 2744904 29 100.0 32 ............................. GGCACACCTGAGCTCGTCTGCAGGGTGGCGGG 2744965 29 100.0 32 ............................. TTGTCGAGGTGCCGGGCGAGGATTTTCTCGTA 2745026 29 100.0 33 ............................. GTCACAGACGACCCCGCCTACGACATGCCCAAC 2745088 29 96.6 32 ............................C CGCTCCGCAACCGGCCGAGCGACGACGTACAC 2745149 29 100.0 32 ............................. AAGTGCTCGGCCTGCAAGGGCCACGGCCGTGT 2745210 29 86.2 0 .......................A..TAT | ========== ====== ====== ====== ============================= ================================= ================== 13 29 98.7 32 GTGAGCCCCACGCACGTGGGGATGGACCG # Left flank : GCGCGGGGGACTACCACGTGCCCAGGTGATGGGTGCGCCGTACATGAACTCACTGCTAGGGAAGCTGACGAGGGCTGCTCCGACCTGGGTGCCGCCACACACAGTGGAGTCAGGTGTTGTTGTCGTCTGGTGCTGCACTGGAATTACAGCTTGCGGAGCAGCGCGAACGTCCTGACGTGTGGCTGTCGGCTACTGATTCGCCTTCATGGGCGCGCGTTTACCCAGACCGCGTCGAGTAGGGCGGCCCTCGCAGGCTGTGGGGGGAACTCGAGCAGGCCCACGCCTGGTGGGTCCAGCGTGGCCGCCCGGAAGTGTCAGAGTTCGGGCTGACGGTGGGACCGCAGGGCCATGTGGTGTGGTTCGAATCCCCCGACGGCCCCTCATGGCGCCATTGAGGGGACGATGCTCGGGAAAACGGTTTAGAATGTCGTGTATGGCGAAGCTGCCCACAATCCAGATAACGAGGAGATAACGCCTCGCGAAATTGCAGGTCAGCTTCT # Right flank : TCCGATGTCCGTATCGTTTTGGGCTGCAGATTGCTGCTGTCGCTGAGGCTATGGGGCGGGCACGGGCGTGTTTCCGTGTCCCGCCCCACTTGCTGTCGCCCTGTTGTGATCGGGAGGCGTCGCGCCCCTGCTCCGTGGGTCGCGGGGTGGAGGGGAGGAGCCGCGTTTCCCGCGTCTGTTTGGTTGCTGTTCTCCCTGCCGGGCAGGGTGGGGTGCTTCTTCTCTTCTGTCGGGTTTTCTTGTGTTTTGCCTGGTCTGAAGAGGGTGTGGGGTGGTCGGGGGTGCGGGCTGCCGGGGTCGGGGTGAATCGTTGCAGGGGGTTTGCAACGTTATGGCGGCCGCGGTGGAGAAGGGGGTTGGGGCGGGGTTTCGAGGGGGCGTACCCCCGTTTTCTGGTTTTCGATAAGGGAAGCTTATAGAAAACCAGAAGCCTATCCAGGCGTCATGTCCGTTTTGTCGGCTTCCTTGGGTTCTGTTGGCTGCGTTTGTTTACGTTATTT # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGAGCCCCACGCACGTGGGGATGGACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-11.20,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.42,0 Confidence: HIGH] # Array family : NA // Array 8 2777642-2776821 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP063232.1 Thermobifida fusca strain UPMC 901 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 2777641 29 100.0 32 ............................. CCTAGCGCGCTGACCTGCGCAAACGCATCCCC 2777580 29 100.0 31 ............................. TCTACCCGCACCTCGCTCAGCGCCGCGAGCT 2777520 29 100.0 32 ............................. TTCTCTGGGATGGGCAGGGGCACCACTGGTGA 2777459 29 100.0 32 ............................. AGCCCCGGCATGAGCAGAACCCACTGCGGGAG 2777398 29 96.6 32 ............................T TCACCGGACTCGGCTGGGGGTTCACTGGTGGT 2777337 29 100.0 32 ............................. CAACCTGAACGTCGCCTCCGCCCTCGATGCGG 2777276 29 100.0 32 ............................. GGCATCCCAACGCAGACCCTTCGCCCCACCAC 2777215 29 100.0 32 ............................. CCACCCGCCGAGGTGGCGCCCACCAGGGTGAT 2777154 29 96.6 32 .....................G....... CGCGGGCGACCAGCTCACCAAGCCCCGGTCGC 2777093 29 100.0 32 ............................. TCGTAGCCGCCTGGGCCGACACCGCCCCAAAT 2777032 29 100.0 32 ............................. CCGGTCGGCGAGTGCCCGGTACGCCTCGCGGT 2776971 29 100.0 32 ............................. CAGCAGCGCGCTCCTGCACGTGGTAGCGGACC 2776910 29 96.6 32 ..........A.................. ACCACGCGCAGGTCGGTGCCACGCAGCACGAA 2776849 29 96.6 0 ..........A.................. | ========== ====== ====== ====== ============================= ================================ ================== 14 29 99.0 32 GTGAGCCCCACGCACGTGGGGATGGACCG # Left flank : GCCGTTTCGGAAGAGGAGCCGCCGAGCTCGGGAGGGCCGTGGCAAGTCGTTGACTTGTGGGACCCGGTGGTCGGGGCTGTCTCCGGCGGTGTGAACTATGCCAATCACATCGCGGACAGCGAGGAGCCCTGATGGCCAAGCTCGTCATGATTGCAACTACAGCGGTTCCTAATCATGTTCGGGGTGCGTTGTCACGATGGATGATCGAGCCGGTCGCCGGAGTGTATGTAGGAACGATGAGTGCCCGAGTCCGCGACGAGCTGTGGTCCGCGGTGAGTGCTTCAGTGGGGGACGGGGCTGCCCTATGCGTTCACCCCGACGATAACGAGCAGGGTTTCACCGTTCGCACAGCGGGGGAGCGTCGTCGCGCGATTGTGGACTTCGACGGGCTTCAACTTGTTCAACTATCGGCGTTGGAAGGTGCGGAACAAGAGATGCCGCCGATCCCGGAAGGGTGGTAACGAGAAGATAACGCCTTGCAAAGTTGCAGGTAAGTAACT # Right flank : TGGGTGACCAGTCGCTGGGGCGTCCCTAAGTGCTGGTCTAATTTTGCTGTTGGACGAATTGCAAGAAGGCGAAGGCTGGCATGCAGAAACACGATGAGACATGGATCCGCTATTTCAAGTCCCAAGGCTAACCCAATGCTGTGGGGCTGGCAGTAGGAATGGAGGGCGCCGCCTACGCCCTTAAACGACGGCTTGGTTGCCAAAGTTTGGGAAAAGCGATCGGGTGAAGAGCTGAGGCGGATTCAACTCTTCTATGAGGATCTCTCTGAAGCGCCACTGAGTTTTCATACACCGCGTATCAACGAGGTGTTGTACGTCAACGCTTGGCTCTCTGGTTGGTCGAATACCTGCGGGAGAGTACAAGGAGGGAGAGGATACGCTGGCTCCTCTCCTTGACGCGAGGAACTCCCAAAGCTCCCAAGTGTCATAGCACCATGTTCAGGCTGGTGTGGACATGGATCCTGCGATGGTCAGGCTTGGGGAGACCACAGAACAAGGAA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGAGCCCCACGCACGTGGGGATGGACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-10.60,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-1] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [46.7-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.74 Confidence: HIGH] # Array family : NA // Array 9 2787538-2789153 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP063232.1 Thermobifida fusca strain UPMC 901 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 2787538 29 100.0 32 ............................. TGGCCCGAGGTCGGGAGTATGGCCGTGCTCCC 2787599 29 100.0 32 ............................. TGACGATTTAGAGGTTGTTTCTGTATTAGCTA 2787660 29 96.6 32 ............................T CCAGCACGGCCTGGGCGAGGATCCGCGCGGTG 2787721 29 100.0 32 ............................. ACGAGAACGGAGGAGCTACGATGCCCACCACC 2787782 29 96.6 32 ............................T ACATTGAGGCGGTGTTTCGGGGTGGAGCAGCA 2787843 29 100.0 32 ............................. AACACCCGCGCGTTCCACACCGGTTCGTCCCG 2787904 29 100.0 32 ............................. CACGGTCGCATCGGGCTGGCCAGGGGCAGGCC 2787965 29 100.0 32 ............................. GGTTCGGACAGCCTGATCGTGTACGCGATCTC 2788026 29 100.0 32 ............................. TTCGCGTTCTGCAGCTTCGAGGTCGGCGAGGT 2788087 29 96.6 32 ............................C CAGTCGACGAGAATCCGGCTAGCGCACTCGTC 2788148 29 100.0 32 ............................. GTCGCTGACAAACGTTTCAACGATTTTCTGAG 2788209 29 100.0 32 ............................. ACGTATTCGATCTCCTCGTAGCGGGCCTCCGG 2788270 29 96.6 33 ............................A GCGGGGGACGAACCCCCGCTTTTTTGTGCGCGC 2788332 29 100.0 32 ............................. CGCTGATCTCGCAGCACCCCCCACGCGAGGGG 2788393 29 100.0 32 ............................. GTACATGCGGTATGCAACACTGGGTGTGCCTC 2788454 29 100.0 32 ............................. GCCGGGAGCGGACAACTCCCGGCCGACCACAG 2788515 29 96.6 32 ............................T CAGGTGCTTGATGGCGTGCCAGGCAGTCCAGG 2788576 29 100.0 32 ............................. GTCAGTGATACGGTCCCCGGTGGTGTAGTCCC 2788637 29 100.0 32 ............................. GGTACCTGGACCGCCTCGAGGACGCCGGCCAT 2788698 29 100.0 32 ............................. CTCGTGCGACCTGCCTGGTGTGGGGGATGCGA 2788759 29 100.0 32 ............................. TGACGGTTTCTGCCCTAATTTCGTATTGACCA 2788820 29 100.0 32 ............................. TCGCGACGAGGATCGTACAGGTGTGCGTAGAT 2788881 29 100.0 32 ............................. CCCCCCTCTGTCCTAGGTGAGAGGGGATTTTA 2788942 29 100.0 32 ............................. ACAGGTCCCGCATTCGCGGTGCGCGCGCATGA 2789003 29 100.0 32 ............................. ACAGGTCCCGCATTCGCGGTGCGCGCGCATGA 2789064 29 100.0 32 ............................. ACAGGTCCCGCATTCGCGGTGCGCGCGCATGA 2789125 29 93.1 0 .........................G.G. | ========== ====== ====== ====== ============================= ================================= ================== 27 29 99.1 32 GAGAGCCCCACGCACGTGGGGATGGACCG # Left flank : TTTGTTCCCCACTGAGCTCCTCCCCGGGATAAGCGGAAAGGTCGATAGCGATCTGCTGTTGGAACTCTCGGGTTAGTTTCCCTATGTCATGCAACCCCGCCCAGAAAGCGATGCAGTGTCCCGCGTGCTCTTCGTCAGTCTCCATAGACGAAGCGATCGTGTCTCGCAGCCCGGGAGAGAGATATTCGTTCCACAACACCAATGCTGCGGCAGCAGCGTCGAGGGAATGGCACACCAAGGGGTAGGTCTTGCCGCGAAGGCCGCGTTCTTTCGCCCAGAACCTCAAGTCGAGCGGTGGGATACCGTGCTTGTCATCTGTAGAATCGTGTTCGGGCACGTTTCCTCCTGAGTTCTGCTGCCTTAGCACGCAGAACATAGCGTTCCAAGCAACTTGAGTGAGGCAATTCCACAAAATTGGATTAGAGTGCCCGCAGAGGGAAGCACGCCCACCAGACAGATAACGCGAAGATAACAGCCCACAAAACTGCAGGTCAACAACT # Right flank : GCCGCGCACGCTCCCTCGGCCGCCCCGGTGGGGGCGCAGGACCCCAGTGATAAGACTCCGATGGTGGCGGAGGGGATGTGGGTGGTCCCTTCGCCGTCCTCCGCGGTAATGGCGTTGGCGTCGCGGCGCACGGTACCCCGTCCTAGGTAGGCGAAGGGCTACCGGCCAGATGCCCGGGTGAGTTCACGCAGACTGGAGGCGCACCGTTTCCCGGTAGTGCTCCCCGGTCAGCCCACTGGGGCCAGGGTCATCAGGCCGCATCCGTAGGCTTTGGCGCGACCTATCCCCGAGATGAGCGCGCGACGTAGGGCGTCGGGGTCGGTGACTTCGAGCCGACCGTCGAAGGTCACAGTGACAAGAGAGACCGGACGGCCTTTTCGAGCTCCTTTAGAGAAGTTCCAGTCGCGACGGTTGTGGACGATCAGTTCGTGTTCGTCGCCTTCGGGAAGGCGACGCTTTTCCGCAGGTTTCTCCACTACCCGGAATCCCGCAGCGTCTTG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGAGCCCCACGCACGTGGGGATGGACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,2] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-11.20,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-25.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.42,0 Confidence: HIGH] # Array family : NA // Array 10 3059944-3059733 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP063232.1 Thermobifida fusca strain UPMC 901 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 3059943 28 100.0 33 ............................ CGCACAGAGCGTGCAGGCCGCAACACCCTGAGT 3059882 28 96.4 33 ........T................... CCGTCGTCCTCGTGCTCGGGGAGCGCGCTTATA 3059821 28 96.4 33 ..........A................. ATTCCGGATGAGGCCAGAGCGGCGGTTCTATTT 3059760 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 4 28 98.2 33 GTGCTCCCCGCGCATGCGGGGATGGTCC # Left flank : ATCTCCGGTAAGAAGGGCGAGCGGATCGTCTACATCCGGACTCTGGTGTCGGGCAAGAAGGGCGCCGACGCTGGTCGTTCCATCGACACCGTGGCCAACACTGGCCAGTACCTGTAACAAGCGACTTGGTGGGCCTGCCGGACATCCCCGGCAGGCCCTTCTTTCTGCTTGGCGGCCGTCGGCTTACCAACAGGCGCGGAACCTGCTCTGTCCAGCTCTGTAAAGGGGAGTGGTGGGATCGCGTGGGCTCTAGTCGGTGTGCAGGACTGTCGTCGTGTCCGTAGGGGGACCTGTGGGATGTGCGGTGAGGGTTTTCTACGCCTGAGGAATGGCTTTGTGCTGAAGGCTTCTCACATCGGTGGTTTCATTGCTATGCGAGACGACTCTGTCCTGATGCTCCATGCCTGTTGGGCCAAATTTTCTTATTGGGGAGCTTGGTCTTCTTTTCGGAAGTGAATGAAATTGGTGCTGCACGCTGGTAAAGTTGCAGGTCGTTTAGG # Right flank : CGTCCTGCCCCCTACTCGACCGTCACTCTCCACTGGCCGCAGCACCATCTGCTCGCCCAGGCCCTACACCCTGAACCGGTCGTTGCCATGGCGTATTCACCGGCCCTCGTGCCTCGCCAAGCATGTAAAAAAGTTGAACTCCCGGGAAATTCAGGGGTTCAGCCCGGATTCGGGTTAGAGCAGGATCGGCCATTCCCGACCTTGATAGGTGAGCCGGGCGCCGTCAGGGTCGATGATGACCTGACATTGGTGCCGTGCTGGTTGGCCGAGTTGTTCCCATGTGCTGTGGGCGGCTTCTATCTCATCCCATAGGTGGCGCCGTCCGCCTTGGACGACACGCCCATCAGGGGTGAGATAGCACCAGGAGTCTTCGGTGAGCAGCCAGTGGCGCGGAGGCCCGTCGTCGTGGATGGTCCCCAAGGAGACGGCGTCAGGCACGACAAGGGCAGCAAACCACGCCCATGGTTCCCCGCTTGTGCCCGTGGTGAGGCTGGTGGTTC # Questionable array : NO Score: 5.77 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCATGCGGGGATGGTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCATGCGGGGATGGTCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: R [31.7-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 11 3248898-3248383 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP063232.1 Thermobifida fusca strain UPMC 901 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 3248897 29 100.0 32 ............................. CAGCATCACGGGACTCGCATGACCGGGGTGAC 3248836 29 96.6 31 ............................T GGGACACCCCAAAGCCTGGGCAGCAGCCCTA 3248776 29 100.0 32 ............................. AACAGCACGTCCAGCACAGTCCTCGCGGTGCG 3248715 29 100.0 32 ............................. TGTGGCCAGCGGCTGTCTCGGACATGGGGCGT 3248654 29 100.0 32 ............................. AAAGGCCGGGAGCTGCTACTCCCGGCCGAAGG 3248593 29 100.0 31 ............................. CCTGTCGACCGGGACGCCGACCAGGTCCTCA 3248533 29 100.0 32 ............................. GTCCCTTCGACGCAGATTGCGTGGCATGCTGG 3248472 29 100.0 32 ............................. ACATAAGTGAGGCATAGGACGATGATCAGGAG 3248411 29 93.1 0 .......................A..T.. | ========== ====== ====== ====== ============================= ================================ ================== 9 29 98.9 32 GTGAGCCCCACGCACGTGGGGATGGACCG # Left flank : CCGCCGGTGTCCATCAGCACCTGGTCGCGGCCCTCGAAGTACTCCGGCTCCGAACCGATGTTCTTCGCCCGGAGTTCAACGAGCACGTACTGGCCCTGCGGAGAGTGCGTCTCCCACTCCTCCTCCACCTCGCTCACACCCTCCTCAACATTGAGGACGGTGAACTCCCAAGCCCCGTGGGCTACCGCGTCACCCACCCGGTACGACTCCTCCACCTCGGCCGGCTGCTCCGCTGTGTCGAGCCGTGACTCCGACGACGGCGCGACCAGCGCCAGGCAACCGACCGCGACGAACAGCACCACCAGGAGCGTGGCGCAGCCGCCGCACCCGAACAGGGTGACCTTAGCTCCCGTGGACATGCCCTGGCGCGGCGGCTGCGACGGCGGCTGCTGGTATGGGGGATGCATGAGGTCCTCCAACAGAAACTAGGGGTTGTCACCCCGTGAGATTAGCCGCCCCGCCACTAAGTTCGAGCTAAAAACGGTATTTTCACGCCACCT # Right flank : GACACAACCACTGATGTCCCTGGCGCCTTCTCGAAAGTTGTGGGAATGCAGCAGTGCCTGGACTGCTCGGGCATTGAGGAGCGCTATCGGTTACTTAGCGCTGCCTCAGGCCAGCACGCGTGGGCCCTTGGGCTGTGCATCGAACGAGAAACTCTGACAGCAACGGCACCGCTGAGTGCCCGCTGCTGTCAGGGCTGCTGGTGCTGCGGGTCACGTGGGCTGCCACGCTTGGCTGGCCTGTTCGATGTCTTCTGCGGCTACTCGGCGCAGCTTGTGGGCGAGATCGGACAGCGCCCGCGCCACGGCTAGTTCCTCCCCAATCTCCGGGATATCGGCGTCGGTGGGATGCTTGCGTGCTTCTCCGTGGCCGCGCAGGTTCCACTTGGTGGACGGCAGTTGCGCTTCGGCGAGGGTGCGCACGGAGCCGTTCTCGTGCACCTCCGACACTGCGACGTCGATCTGTATCCGTTTCAGGGACTGTCCCAGCTGCGGTTGACGGG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGAGCCCCACGCACGTGGGGATGGACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-10.60,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [43.3-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.15 Confidence: HIGH] # Array family : NA // Array 12 3253353-3250028 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP063232.1 Thermobifida fusca strain UPMC 901 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================== ================== 3253352 29 100.0 32 ............................. CCAGCCCCGGACACGCGGGAATCCCGAGGGAT 3253291 29 96.6 32 ............................T CGGGCACGGCCGGTGGGTTCCCCGCCGCGATC 3253230 29 100.0 32 ............................. TACCAAGGTATCTACGCGATACCGGGAAGAAG 3253169 29 96.6 32 ............................T CGCGCTCCACTCGGCGGCGTAACAGGCCACAC 3253108 29 100.0 33 ............................. GCCTCCACAGTGCGGCCGTCACCGCTGGCATCC 3253046 29 100.0 32 ............................. ATTTCCCCTTCGGGTTCGATCCCCGCGGCAGG 3252985 29 100.0 32 ............................. GCCAGCGGGCCGCGGAACTGCAGACCAAACGC 3252924 29 100.0 32 ............................. TTTCGGTTGTCTTCCCCGGGCCTGCACCAACC 3252863 29 100.0 32 ............................. TTAGTGTCGCATCGAAAACAAAGCGGAGCCTG 3252802 29 100.0 32 ............................. GCTTCGTGGATAGCGTCGAACTGTGCGTAGGA 3252741 29 100.0 32 ............................. ATGTTGGGTCGCCACCGGAACACCATCAGCCG 3252680 29 100.0 32 ............................. GGCCATCCAGTCAATCCACGTGGCTACGGTGG 3252619 29 100.0 32 ............................. CTGCGCGCCGAGTATGAGCGTCAGCTTGAGGT 3252558 29 100.0 32 ............................. TCCTCCAGTACGACCAGGACGGGGCGCCACCG 3252497 29 100.0 32 ............................. TCGGGTATTTGCCCGCGAGGTCGGCCGGTGGA 3252436 29 100.0 32 ............................. ACCCGGTGCGCTTCGGCGTGGCGGGCGGTCTC 3252375 29 100.0 32 ............................. ACCCGGTGCGCTTCGGCGTGGCGGGCGGTCTC 3252314 29 96.6 32 ............................T TCGTCGGGCTGCTCCTCGTGAGGGGCGGCATG 3252253 29 100.0 32 ............................. AGCCCATCAACGCTCCCAAATCGTCCACCCAC 3252192 29 100.0 32 ............................. GCCGGGACCAGCGGCAGTCCCGGCCTAGGGCC 3252131 29 96.6 33 ............................A GAACGGAACAGCGGAACGGAACACCGGTGGAGC 3252069 29 100.0 32 ............................. CATCGATCATCGGTGTGCGGTCGGCTATCCAA 3252008 29 100.0 32 ............................. GCCATGAGCCGGGCAGCCAAGGAGGTGCGCGC 3251947 29 100.0 32 ............................. CATCGATCATCGGTGTGCGGTCGGCTATCCAA 3251886 29 100.0 32 ............................. GCCATGAGCCGGGCAGCCAAGGAGGTGCGCGC 3251825 29 100.0 32 ............................. TCGACGCTCTCGATGGCGTCGGCGATGGTCTC 3251764 29 100.0 32 ............................. AGGGACTGTCGGTGCGGCATGTGTTCATGGTC 3251703 29 100.0 32 ............................. ACGACGCGGCCGTCGTCGAATACCGGCGGCTC 3251642 29 100.0 32 ............................. CGTTCAAAGCGCGGCCGTTCCTCCGAGCGCGG 3251581 29 100.0 32 ............................. GTTCCCCCCTAACCGACGGAATGGGGGGAATA 3251520 29 100.0 32 ............................. CGATCGCAACACTCCGGTGACGACCACCCCTG 3251459 29 100.0 32 ............................. CGGCACGCTCTTCCCACCGTGCGATGTCCATC 3251398 29 100.0 32 ............................. GAGATCACCTAACATGAATGAACCACTAACGG 3251337 29 100.0 32 ............................. TCGTGCGCCTGGTTGAGTTCCTGGGCGAACTG 3251276 29 100.0 32 ............................. TTCGTGGGCGCGCCGCCGGTCGGGGGCGGTGA 3251215 29 100.0 32 ............................. AAAAGCCTGCACCAGCCTGAGCCGCCGCAGCC 3251154 29 100.0 32 ............................. CCCTCGACCAGCCCACCTTCACCCAGGTCGGA 3251093 29 100.0 32 ............................. ATGGGCGGAACAGTCCGCGGAAAATTGACCTT 3251032 29 100.0 32 ............................. TGGTGGACGCCCACCACGTCCAGCTGCCGAAG 3250971 28 93.1 32 ..T..............-........... GCCGGGAACCGCACGCTCCCGGCCTGGAGTGA 3250911 29 100.0 32 ............................. GAAAGGCCGGGAGCGCGCAACTCCCGGCCCGA 3250850 29 96.6 32 ............................A TCAGGGTCTAAATCGTCACATCGTCACCATCA 3250789 29 100.0 32 ............................. GTGTGGGCGGCTTCCTCGGCGGCGCGTATGTC 3250728 29 100.0 32 ............................. TCCGGGCAACAGGCGTACGGCCGTGTCTGCCT 3250667 29 100.0 32 ............................. CGGGCATGCACCCCAACACCATCAAAAAACTC 3250606 29 100.0 34 ............................. CGCGTTCTGCGATCCAGGACACCGTGGCCTCGGT 3250543 29 100.0 32 ............................. TCCTTCAGGCCGAGCCTGCGGGGGAGGTGTCC 3250482 29 100.0 31 ............................. CTCGCCTAGGCCAAAATGGCGACGCCGGGTT 3250422 29 100.0 32 ............................. TCAGCACCCGCATCAGCCATCTCCTGGTTGCG 3250361 29 96.6 32 ............................C CAGTGGCCGTAGGTGGTGGTGGGCATCGGTTC 3250300 29 100.0 32 ............................. CGTTTCCCCAGACTCGTACACGGTGAACGCCC 3250239 29 100.0 32 ............................. GCGCAGCAGATCGCCGCAGAGCAGGAGTGGAT 3250178 29 100.0 32 ............................. CCCCGGCATCGCGCTGGCCGCTGCGTGAACTG 3250117 29 100.0 32 ............................. TGCTGCGGTTGTGGGAGCAGGCTGCCACCAGG 3250056 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================== ================== 55 29 99.5 32 GTGAGCCCCACGCACGTGGGGATGGACCG # Left flank : GCCGGGTGGTGCCGAGGATGGCGGACGGTCTGCCCGTAAAGAGTGCAACGCCGACTCTTCGGAACCGGTACTATCTCTGTGCGGGACGGGCCTGACAGTGTCGGGCCCATGGTGCGGGCGTGTAGCTCAGTTGGTCAGAGCACCCGCCTTACAAGCGGGCGGTCGGAGGTTCGAGTCCTCTCGCGCCCACGTCGATACGCACTCGGAGACGCCCGGGAGCCGGTACGGCCCCGGGCGTCTTGCTGTATTGAGGCCAGCTACAGCACTTCCCCTGAGCCCCGTGGGCGTGGTGCCATCAACCGTCATCCGTCGCGCAAGAAGAAAGCTCGTCATGGCCACGCAGGGACCGCCAGGCATTCCGCGTATGGCGACGGTGATTAATTGGGTTCTAGTTCTGACTCAGATTTCTGGAAAACGGTCTAGAGTGTCTTGTGCGACGAAGTTGTCCACGCCTTTGGTAACGAGGAGATAACGCCTCGCAAAGTTGCAGGTCAGCTTCT # Right flank : ACCCCTACTTCGACACCGACCCCGACGACTGGTGGGACGGCGAAGACCCCGACGACGACCCCGACGACTGGTGGGACGGCGAAGACCTCGACGACCCGCGTATGGCCATCCTCCTCACCCCAGGCGCCTAACCCCCAAAAAGGCCCCGCCACCACCACGGTGACGGGGCCTACTCTTATCCCCATGAACGACGATCACATCATTCGCGCCCGAACCCTAATCCACCACGACGACCCGAGAATCGCCCGCGAACTCGCCCGCACACGCCCCCGTACCGCCTCCCCCGACGAGGCGTACTGGCAGGCCGCCCTCCGCATCGCCAAGCAGGACGAGCGCCGCGAACTCGCCCGGCGACAGCCCGTCGCCTACACCATCGGCTACGCGCTGGGCTGGACCACCATGCTCGCCATCCCCGCGGGCCTGGGCTGGCTGCTCTGGCGGCTCCTCAGCTAATCCACGTCGACACGCACACCGTCAGCGAACGAACCCTCCCCGTTCAC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGAGCCCCACGCACGTGGGGATGGACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-10.60,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [31.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.42 Confidence: HIGH] # Array family : NA //