Array 1 223478-218009 **** Predicted by CRISPRDetect 2.4 *** >NZ_FJND01000001.1 Trichococcus sp. ES5 isolate Trichococcus ES5, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 223477 32 100.0 34 ................................ CAAATGCAAGACCTTTGCCGCCGTTGAGATAATC 223411 32 100.0 34 ................................ AACCATTTGTTGACCATTGTTGGATTAAAAGTAA 223345 32 100.0 34 ................................ TTTTTGTGCCTGATCGATGACCAGGAGCGCGATA 223279 32 100.0 33 ................................ TTACACAGCTTGAATTAGTGACCCTAGCTTTTG 223214 32 100.0 33 ................................ TTACACAGCTTGAATTAGTGACCCTAGCTTTTG 223149 32 100.0 33 ................................ AAGGACAAGACAGGCGGTATCGCAAGGCGCTTA 223084 32 100.0 35 ................................ TGCAAGTGCCAATGTCGCCGTATCAAAACGTGCGC 223017 32 100.0 33 ................................ AGCAATAACACCATAATAGCGTCCACGAACATC 222952 32 100.0 34 ................................ CTCGATATGCTTATCGATGCTACGAAGAACTTTT 222886 32 100.0 35 ................................ AACAGAGGCTGGAAGCAGAAAAACAAGCGCAGCAA 222819 32 100.0 34 ................................ TCATAAAAGTGTACCAACCGTTCTATGTGGCCAA 222753 32 100.0 36 ................................ ATCGATGTACGCGCGCGCCTCTCTTGTGAGCGTATC 222685 32 100.0 35 ................................ GAAGCTGGGACACCAATTCAGGTTGTCAAAGAGAG 222618 32 100.0 35 ................................ CAGTAGAACAAGCCCGCGTTCGCGCCATTCGTGGC 222551 32 100.0 34 ................................ TACATCCAGGATCTTGTTTCCTTCATCCGACAAC 222485 32 100.0 33 ................................ TCAACTTCCGCTTTAAACTCACTGTATTTCATT 222420 32 100.0 35 ................................ AATTTGAAGTAACGTGTCGTGCTGAAAAGCAAATC 222353 32 100.0 36 ................................ GCCACCGATAAGACTAGGAACGTCATTCATAAAGCC 222285 32 100.0 34 ................................ CCGGCACTTACTGCTAGATATCTTACTACCATTA 222219 32 100.0 35 ................................ GCCGCCGACGAGTGGGACCTGATCGACGAGTACAC 222152 32 100.0 36 ................................ TACGTCGAAAAACAAGCACATATCACAGAGGTTACG 222084 32 100.0 33 ................................ AACCACATGTTCGCACCAGTTATGGTTGCTGTT 222019 32 100.0 36 ................................ CAAAACTCATACGGCGTTGTTTTGGACGAAATTGAA 221951 32 100.0 34 ................................ ACTGTTGTTGCCAACCGTTTACGAGCCTTACAAA 221885 32 100.0 36 ................................ ACGCGCTATTTTGATTACTCGTGGGAAAACGAAAAC 221817 32 100.0 34 ................................ CGAATCGGCAAAGTCTTATCTGTTGAATCTCGCC 221751 32 100.0 34 ................................ CGACTGGACATGGCAACGGATCACATCGAATCCA 221685 32 100.0 34 ................................ ATACATGAAAATGTGTCCAATCCGGTCGTAAAAC 221619 32 100.0 34 ................................ AACCTCTTTCTTAATAGCTTGCAAACCTTTTTCA 221553 32 100.0 35 ................................ AAAACCAGATAGCGTTGAAATGGTTAAAATCAAAA 221486 32 100.0 34 ................................ ACAGAGAACAAGGAAGTCACTGAAGAAGTTGCCC 221420 32 100.0 35 ................................ GAAACAATCAAGATAATCCGGAATTTGGGGATCTG 221353 32 100.0 33 ................................ AACGGACATGAAGAAGTATTATCCAGGGTTAAA 221288 32 100.0 36 ................................ AACGGCATCGCTCAGGGCGTAAGCATGACTGCGGAT 221220 32 100.0 35 ................................ AGAGATAAGCTACATCCCAAGCCAATTGTGTATGA 221153 32 100.0 34 ................................ AATACCGTGGCAACGATGTTGATGCCGGCCGTCC 221087 32 100.0 34 ................................ CGGTATGGGTAAAGGATGCGCTCCTTCAGGAGAT 221021 32 100.0 35 ................................ TTAAAAACGGAAGTACAAATGACTATGACGCGCGT 220954 32 100.0 34 ................................ TTCAAAGGCTTGCTGTATAACGGTTGCAGGCTAT 220888 32 100.0 35 ................................ GCTCATGCCCGGCCGGTCCAGTTTAGAGCCAGAAA 220821 32 100.0 35 ................................ ATTGTGCATCCTCCTCATTACATTCCCATATCGGA 220754 32 100.0 35 ................................ TAGTGTGATAACTACTATCACTTGCAACTTTAACC 220687 32 100.0 33 ................................ AAACAAAAGGAAATAAAGGAGCGTTTATCATGC 220622 32 100.0 32 ................................ AGATCACCGTTCCCATAGTCGATGGTGCCGGT 220558 32 100.0 36 ................................ CTCCTGTGTTGTATAATGGACTTGTAAAAAGCTAAC 220490 32 100.0 36 ................................ ACCTAACCGCTAAAGAAGGTTTATCCGAAACAGAAA 220422 32 100.0 33 ................................ GACTTAGTACGGTAAATGTGATAATTTAGATAC 220357 32 100.0 35 ................................ GGCATGGCGATGGTCGGTATCTTGTCCGTGTTCGC 220290 32 100.0 35 ................................ GGCTTCGCGTTATGGCAAGCCCAATGCGCTAACAA 220223 32 100.0 34 ................................ TCCATGGCAGATGGATGTCCGCCTTTAGAGACTG 220157 32 100.0 34 ................................ CACACGCTCGATGTTACTGAAGAAATGGCATTCC 220091 32 100.0 35 ................................ ACGTACTTGTCTACGTCCTCGTTGTATGCTGCGTC 220024 32 100.0 34 ................................ GGTTGCAGCAGTAGCCGCGGCAACAACAGGAGCA 219958 32 100.0 35 ................................ AATGAGCAACGAGGCGTGAGCGTGACGCAGTGAGT 219891 32 96.9 33 ........G....................... TCCCAAGTCACAGAGGAGCGCAACGGAATATTT 219826 32 100.0 36 ................................ GGTCAGAGCAAAGTCATAACTCAACTTACCGATATA 219758 32 100.0 34 ................................ TCGTGTAGACCTCTATACATTTACGCATATAACC 219692 32 100.0 34 ................................ CATGTTATGTCAAAATTATGCGATGCGGAAATTG 219626 32 100.0 34 ................................ GGAGATTTGAACGATACGGACCTAGAAACACTAA 219560 32 100.0 34 ................................ ATCCCATATAGGATAAACAATGCGACGCCGGCTG 219494 32 100.0 34 ................................ CATAAGGGGTCGATCACAAAAGTTGGGAAGCTCC 219428 32 100.0 34 ................................ AACGCAAACGCAATGACGGTCAAATCTTGGTTAA 219362 32 100.0 35 ................................ CGCGAAGACATCAAGTATGAACTGATCGGGTTCGG 219295 32 100.0 34 ................................ CGAAGAACGCAGTCCCTAAAACAGATTTCAATTC 219229 32 100.0 35 ................................ AAAGGATGAAAACAAGCGCCGCGATCGAAACGGCC 219162 32 100.0 34 ................................ AAAGCGCGGTTTCCCTCGGCATATGGTGAAAGAT 219096 32 100.0 35 ................................ CAAAATTATCACCACCCGATAAAATTAATCCCGAA 219029 32 100.0 35 ................................ GGACGCGATCACGGATATTGGTGCAATCGCTGCCC 218962 32 100.0 34 ................................ TGTATTGAACTCCGTTTCCAACGTTAATCAAGAT 218896 32 100.0 34 ................................ CATAATGAACTCGTAACCCTGAGTAAAGTGTCAA 218830 32 100.0 35 ................................ GGTAGCGATAGCATTTGCGATTGTTTGGTCTACCA 218763 32 100.0 34 ................................ TCACGAACATGCAAATTGCATCTTTTGTTTACAA 218697 32 100.0 33 ................................ CAGACCTGAATGATAAGACATTTACGATATCAA 218632 32 100.0 35 ................................ ACGCTCCAGCCTTGGGTGTATACCCATTGAGGGAT 218565 32 100.0 34 ................................ ACTTGCTGGATCGTGTACGTTTTCCCTTTGACCC 218499 32 100.0 33 ................................ GACATAAAAGTAAGATATGCACGAATTCCTTCG 218434 32 100.0 34 ................................ AGCACCACGATCGGCATGCTCTTATATCCCGTAT 218368 32 100.0 34 ................................ AATTTTTGCGGCGGTGCTACAATCAGCAACGGCT 218302 32 100.0 34 ................................ CGCACCCGAAGACAGGTAAGACGATACGCGCCAT 218236 32 96.9 34 .......A........................ GAAGAACGGCCAACGAATGAACTTTATATAAATA 218170 32 96.9 32 .......................A........ AGTGATGAAAGAAAACAGCCTTTTTTTATTAC 218106 32 90.6 34 .......A.T...........C.......... CACACCATAAATCTGAGAGATCGTGATGACGGTG 218040 32 96.9 0 ...........T.................... | ========== ====== ====== ====== ================================ ==================================== ================== 83 32 99.7 34 GTCGCACTCCTCGTGAGTGCGTGGATTGAAAT # Left flank : AGAGAAGATTTGGATCAATATCCACCTTTTCTATGGAAGTAGGTGATATGCCATTCTCGCCTTGATAACCTATGACGTCAGCGTATCGGATAAAGCAGGTAGAACTAGATTGCGTAAGGTAGCTAAAACTTGCCAAAATTATGGTCAAAGAGTGCAAAATTCTGTATTTGAGTGTATTGTGGATAATATGCAACTTACTGAACTAAAAATAAAGTTGTTGGATATTATTGATACGAATGAGGATAGTTTGAGGGTGTATATCATCGGTAATAACTACAAAAATAAAGTGGAACACTTCGGAACAAAAAAAGCTATAAATCTGGAAGATGTATTATTCTTTTAGTGCGAACCTGAAGTGAACATCAAACTACTAGAAGCTTCGCACCTCTATAATGTACTAGAATTGATATAATTAGCTTAATATTTATTGTAAAAACGAGTTATAGCAAGTCGTAAAGTTGATTTAGACATAAATTTATTAATTATCGCTATAATTCGCA # Right flank : TAGCCTATTTTATAAGGCAACTACAGCTATTTTGATTTACATGGGAACATAATTCGTTATTAGATTATGTTCCCGTGTGTAATGCATTCGTATTGTTCTATTACACTCTCCAAAATAAATAAAGACTGGCAACTATCCTTCATGGATAAAATTGCTAGTCTTTATTTGTAGGGTCTATTGCAATCACAAGGGCGTTTTTCCAGTTTTCTCTAAGTCCATTTAAGGGATAGTTTATAATTTCTGTATTGCCATTAAAAATCTCTTCTAAATTATCCATGAACAGATTCCATTCAGACTGTACTTGAAGGGAATGGAAGGAGAGAAGGGATTTTAGAACAAGCAAAGCTACGAAGAGGGTGTTTTTATCTTCATTAGTAACACCATATTGTTTCATGTCTTCCTTTTTTAATCTAGGAAGAACAATATACTTCTTCCCGTAAAAACGGCTATGGTGTGCGGAAATATTCCGAAGGTAACGGGACACGGAGATCCAGCTAAGG # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCCTCGTGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [9,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACTCTTCGTGAGTGCGTGGGTTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-3.20,-5.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //