Array 1 14001-13098 **** Predicted by CRISPRDetect 2.4 *** >NZ_NDGJ01000001.1 Paenibacillus apiarius strain NRRL B-23460 Ga0138518_101, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 14000 30 100.0 37 .............................. CCGTCGTTTCCATAAGTGTAGTAACCTCCCATCATTA 13933 30 100.0 38 .............................. ATCGGAGTGTGCGTATAAATTTGCACAGCGAGTATAAG 13865 30 100.0 38 .............................. CAGGTTCCCGGGCCCGTGAGGATCCGCCAGCAGAAATA 13797 30 100.0 37 .............................. CGCTCAGCAAGGTGCCATCCTTGCTGAAGAGGCGTCG 13730 30 100.0 38 .............................. TGCGACCAATGCTGTTATGGAATGGAGTCGGTACCTCT 13662 30 100.0 35 .............................. ACGGCGTTCCGTCGGACACTGTGAAAATATCCGAG 13597 30 100.0 39 .............................. TTGCGTCATTTCGCGTACTACCGTCCCGGGGGCGACGTT 13528 30 100.0 36 .............................. AATTGTATGGGAAAAGTATGGGTGAAAAACAAGTGG 13462 30 100.0 38 .............................. TATATATCCACTTCCATATACTGAGATCCGCAGTATAT 13394 30 100.0 37 .............................. ATGTCAGCGAATCCTATTTTCGCATATTCCTCTAGCA 13327 30 100.0 38 .............................. TATCTCATCAATGGCAGTCGATAAAGCTTGAGAATGAG 13259 30 100.0 36 .............................. TATGTTCCATCTTCGATTAACCAAAGTTCTATATGG 13193 30 100.0 36 .............................. CCGCTTGGGTCGTGGTCACCTAAATGAATGATTGCG 13127 30 83.3 0 ...C..................G.G.G..G | ========== ====== ====== ====== ============================== ======================================= ================== 14 30 98.8 37 GTTTTGAAAGTACCTATGAGGAATTGAAAC # Left flank : GCTCCGGTTCAGGCTTTAGAGTTTCTGCCATGAGTGAATTGAATTGCTTTAAATCTCCCATTTCATCAAGGTAAACGGCCTTTAAAAGGAGATATTCCAAAGTATTATTGATGATGCCAATGGAATGTGCCTTGTTCTCTAAGTCTGTTTTCTTATGTGTAATTTTTGGTGAGTTTTCATCATTTCCGTATAGGGTGAAACTGTAGATATTGGAGTGTTTCAATGACTGCGGACATTAAAACCTACTATCATAGAAGCATTTGAGCGGAAGCAACGTATTAAACATGTGCACAAGATTAATGCCCTAAAATCTGTCGTCGACCCCCAATAGCGTAAAAAGTGCCGGGGATCGACGACACTTTGTTTTTTAAAGGAAATTGGAGTATCACCGAGTTACGACGAGATTTAGGAGAGAAGTTGAGACATCTTCATTTCTGTGAAAACATGGGGAGGAGAATAAGCTTGATTTGTCGAATGCTTTAGGGACAAGGTTTTTTTGG # Right flank : GCTTGTCCGAGCCGGATACTGCCGCGCTGGTCGGAGTTTATCAAATTGGTTGAAAAGGAGCTGTATGGAATGGAACAACCGAACCAACCGGATTATGTAGGCCACTGGGCAGAGGCGTCGATCCGAAGAGTGATGGATGTCGGCATTATGAATGGCCGGGGGAATGGATTCGCGCCGAGCGAGCCGATCACGCGCGCAGAGATTGCCGTGGTGGTGGACAGAATGTTGAAGTCTTCGGGGAAATAGCATATACTGGACGTAAATCTGGAGGAACCGGTGAAAAGGAGCTCTACTGGCATTATGCTGGTGGGGCTCTTTTTTTGTTGCAAATCAAACATATACAGTAAAAGCCTCGGACTACTCCGAGGCTTTTGCGTATAGGAACTAATAAATATACAAGTCTATATAGAATTCTGATTTAATGTCATTGGCAAATTCAATAAACCTGCTATCAAAGTACATTGAAGGCTTTTCGTTGTTTTCTACATTTACAATTATCG # Questionable array : NO Score: 9.20 # Score Detail : 1:0, 2:3, 3:3, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTGAAAGTACCTATGAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.20,-0.60] Score: 0/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [46.7-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.18 Confidence: HIGH] # Array family : NA // Array 1 5349-5781 **** Predicted by CRISPRDetect 2.4 *** >NZ_NDGJ01000005.1 Paenibacillus apiarius strain NRRL B-23460 Ga0138518_105, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 5349 32 100.0 33 ................................ ATTCGCTCTGTGTTGAAAATGGCTTATATCAAG 5414 32 93.8 36 AA.............................. AGCCTGTTCTACGGTGTATTCCTGTCCATCGTCCAA 5482 32 100.0 35 ................................ TTGAACTGATGCAGGAACGCTTGGCGAAAAAACCA 5549 32 100.0 35 ................................ ATTGGGGCCGCAACGCCAACGCGGCAGAACAAAAG 5616 32 100.0 34 ................................ GAAAATCTTAACGTGCAAGGTATGGTCAAAAATC 5682 32 96.9 36 ..................A............. GAAGAATAGTGCAACTATCTCATCAGCACGGGATGT 5750 32 78.1 0 ........TA..G.A....A...C.......A | ========== ====== ====== ====== ================================ ==================================== ================== 7 32 95.5 35 GTCGCATCCTACACGGATGCGTGGATTGAAAT # Left flank : GTATTTGCCCTTCAGCGCGGGATCACTCCGTTCGATATGGAGGAGATTATGGCGTCGTTCTTGGCTTCGTAGGGGGCAGCTGCGGTTTGTCTGTAATATCTTCGGAGATGCGGGAAACGGTCGGAGAGATTAGGGGCAGTCCCGTTCCTCTCCTTTCTATCATTTACTCCTATTTGTGAAAGTCAGCTTCCTGATTTGGATTTTTGTGAGGCCAGATAACTTAAAAATATTTGCTTGTGATATACTGAGAAAGACATGAAGACGCGCTTGGTGCAAACGAGGGAGTGTAAAAAAATGGAATAAAAATGCTGAAAACGGCCAGGTGCGAATGTGAAGCTCACATGAAATCCCGGGGGGATTCGCACCAATTTTCTTGAAATATTATCCAAAAAAGTTTGTGAAAATGGATTTGTTGAAACTTATTTCAATCTAGTTTTCCCATTTCCTATGAAGTTTTCAGTAAGAAATGATTGTTTTGTTATATCTTGTGCTATTTTTCG # Right flank : AAATTACAAGAGTGAATAAGTTGCAGCCGTCGGAGCACGACAAAGAGCAGGAAGCATAACGCTTCACTGCTGTTTTATGTATCAAAATTCGACTTTAAGACTGTCTCCGTTAACATATACGCCCTCAGAACGGGTAATCGGCAGCTTCTGTTCAGCCGTGAAGCCGATCGTTTCGCCATCTCGTAAAGTGACGTCCTGCTCTACGACATAAGCGGAAATATCAATCAGGAAGTTGCGCAGCTCGGCAGGGGTTGACTGACTGTCGAGCACTTCGAATTCGTGCTTACCGAAATGCTCCAGCCCGACCGTATATCCGTTCGTCCCTGCTTCCGTTCTGACCAGGCCGAAATGTACCAGATTTAATAAAGGACACTCGTCATCAGACTTCATCATCTCGGCCAGCTCCACAAAGAGTTCAGGCTGAAAGACGGTACCGGATGAATAGAGCCCGATTGCATTCGGGAGCTTCAAGCAGCTGGCCGCCAGCTTGGTATACAGCC # Questionable array : NO Score: 9.04 # Score Detail : 1:0, 2:3, 3:3, 4:0.78, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCATCCTACACGGATGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [8,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched TTCGCATCTTATATGGATGCGTGGATTGAAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-4.90,-7.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.68,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 169285-169450 **** Predicted by CRISPRDetect 2.4 *** >NZ_NDGJ01000013.1 Paenibacillus apiarius strain NRRL B-23460 Ga0138518_113, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 169285 32 100.0 34 ................................ CTTGAATGCACGTTCAATAATACCTTGGTCTATT 169351 32 100.0 36 ................................ TCTCCCCTTAGGGCGCTGTAGCGTCCATAGATTTAA 169419 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ==================================== ================== 3 32 100.0 36 GTCGCATCCTACGCGGATGCGTGGATTGAAAT # Left flank : AATGTAAAAATCTTCTCATGGGCGGAGAAATCTTAAGAAAAAGTTTCGTTTCTATTCTCAACTGAGGGGTGCTTTTATGAAAATTCAACTTGTAAAATCCAAAGAATTACTTTTAACGACCCATGCTGGAATTAGCCGGAGAACAGGAATATGTTCCTCTGGACATCGATCTCTCACCATTTTACAACTCAGGTACGAAAAAAGAAGGCGTGTCCCGCACGTATAAAAGGTACTATTATGAACCTGTAAAATGTGGTAACTTGTAATTTGTAGATAGTAGGAGGTAAATAGAGATGATATAGATGCAGTAATTCATTCTCTAGTGCGAATGTATAGTGCACATGAATTTACGGGGGGATTCGCACCATCATTCTTCCAAAATACAGGTGTTTCTTCTTGCTGTATTTGTAATTAATTTTAGATTTGATTTTTTCAATCGTTTAATTGATTATTTTGCTCGATTATATAGCGTAAATTGAGAGTTACTATCAAATTTCGCT # Right flank : TGGGAAGAGTGTAGAATCCGTAGGGGCGGTGTGAGCGGTTCTGCGCGACAGTATTGTGTCCATATCAAGGTGGAGTTTGAAACAACTGTATAAGATATCAGCCACTTCACCTTATTTGCACTAATTCAATATTATGGTAATGCGGAAATAAAGAAGCAATTGGAAGGATGAGGATATGAAAGCGACGTCGTTCCAATATTTAACTATTGGCGACATCATAAGACAATACAGAAGCAAAGCCAATCTAATGCAAACTCAACTTGCCAAAATGTCTGGCGTTAGCACGGGGTATATTTCCAAGATTGAGAATAATGAAGTGGAACGACCACCATTTGAAAAAGCATATCTTATAGCTACCACCTTGCATATTCCTATCCGCGAAATCGTGCATCCGTATCTTGAAATCGGACAAAAATCCGATGTGTTTTTCGGTATATTAAATAAATTGGTCAAGGAGCAGGGGGCTAATTTATCGGATGTAATCATTCAAACGGCATCAG # Questionable array : NO Score: 8.67 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCATCCTACGCGGATGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [7,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCCTTCGCGGGTGCGTGGATTGAAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-9.00,-9.20] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [73.3-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.27,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //