Array 1 60-1006 **** Predicted by CRISPRDetect 2.4 *** >NZ_AMSN01000024.1 Salmonella enterica subsp. enterica serovar Thompson str. 2010K-1863 contig00024, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 60 29 100.0 33 ............................. CGCACGCGGGTTGCGTAACGGATATACGACAGC 122 29 100.0 32 ............................. TCGCAGAACAGCTCTGCTTCCTTTGCGGAGAC 183 29 100.0 32 ............................. TTGCGCTGTTCTATTGGCGGCAATTCTCTGAA 244 29 100.0 32 ............................. GGACAGCACAGTTGATTACAGCAAAATTTACG 305 29 96.6 32 ............T................ ACACGCCAGCCAACAATATTAATTTTGTCGTC 366 29 100.0 32 ............................. CCTTGGCGGCAGCCACCTGAGCAACTGTCGGG 427 29 100.0 32 ............................. CAGCTTCTTAACGAGGAGATTAACAGCGACGT 488 29 100.0 32 ............................. ACTGTAGTTGCGGGTCAGGTTCCGGAATATCA 549 29 100.0 33 ............................. GGATAGGGATCGGTAACTTTGCCATCGATCGGC 611 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 672 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 733 29 100.0 32 ............................. CACCCAGCGGGTAAACTGATCAGCAGCAGCAC 794 29 100.0 32 ............................. AACCCTCAGAAAATAATCCAGACGTTACCGAA 855 29 100.0 32 ............................. GCAGAAACAGAAACCGGATATGAGCCATCCAT 916 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 977 29 93.1 0 A..............A............. | A [1003] ========== ====== ====== ====== ============================= ================================= ================== 16 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CCCCGCGACCAGCGGGGATAAACCGACTACATAAGATAACCAAAAATCCACTGGCAAGCG # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCTCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGAAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCTCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [46.7-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 7714-8900 **** Predicted by CRISPRDetect 2.4 *** >NZ_AMSN01000068.1 Salmonella enterica subsp. enterica serovar Thompson str. 2010K-1863 contig00068, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 7714 29 100.0 32 ............................. AATACTATCCTGCAATGCGCTACCACGTTACT 7775 29 100.0 32 ............................. TGATAACGCATGGGAGTCCAGATTACAAATTC 7836 29 100.0 32 ............................. TGCTGGATACACGCGTTTCAATGGTCAGAGTT 7897 29 100.0 32 ............................. CAGCTCTCTAACGACTTCCCCGGAGTACGTAA 7958 29 100.0 32 ............................. CTTGTCGGCGTTGCTCACGTGACTATTTCGCA 8019 29 100.0 32 ............................. ACCGTTATCTGCTGGTTGATACTTCCCCGAGC 8080 29 100.0 32 ............................. CCGCAGAACGCCGCATCGCCGAACTGGACAAA 8141 29 100.0 32 ............................. TGCCGGTTTATCTGCTCCAGACCGATCGACTA 8202 29 100.0 32 ............................. TCCGCGGTGATAGTATGCGGGGAACTATAGAC 8263 29 100.0 32 ............................. GGAAACGAAGATGACCTTTATTAGAGATATCC 8324 29 100.0 32 ............................. TGCTGAATCTTTGCGAGTGGGATGATGGCACT 8385 29 96.6 32 .....T....................... CCGCTACGATCTATTCGAATCATAGTGGTGCG 8446 29 100.0 32 ............................. GCGTGCGCCGGGATATTGCGCCGCGCCGAGAA 8507 29 100.0 32 ............................. TCCTTTTATTCTAATGGGTTAGATAGGGTAGA 8568 29 100.0 32 ............................. AAAACTGCACCGCCGCTGCCACTGAGTTTGCT 8629 29 100.0 32 ............................. AAAACTGCACCGCCGCTGCCACTGAGTTTGCT 8690 29 100.0 32 ............................. GCGCAGAATTTACAGGTGTCACTGTTGTCCGG 8751 29 100.0 32 ............................. GGCGTGGTGTATATCGGTCTTGATGCGTTGTC 8812 29 100.0 32 ............................. GTCACGAGGTCTGACGCGGATGTGATGAGTTA 8873 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 20 29 99.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGAAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGACATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGGCCCCCTGCCGATTG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 642-3 **** Predicted by CRISPRDetect 2.4 *** >NZ_AMSN01000074.1 Salmonella enterica subsp. enterica serovar Thompson str. 2010K-1863 contig00074, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 641 29 100.0 32 ............................. AGTTTATTACCCCGCCATTTTTCAGTCGTCGC 580 29 100.0 32 ............................. CGGTACGACGTAAACTGCGCGCCCGGACTGAT 519 29 100.0 32 ............................. GAGGCTATCGGGACACAGGCAAACGTCGTGGC 458 29 100.0 32 ............................. TTTGGTTGATGCGTCAAACCTCGCTAACTTTG 397 29 100.0 32 ............................. GCGGAATAATAAATGGAGTGCCATTTGTAGCA 336 29 100.0 32 ............................. GAGCGATGTTGGCATGGCATTGGTTTACTGTA 275 29 100.0 32 ............................. TAGAGCCGTGTGTTAGCAGATAATCAGTATTA 214 29 100.0 32 ............................. AAGCCGGACCACATTTTTCTTGCCGAACTCAC 153 29 100.0 32 ............................. GCTGTTGCCGACGTCGGGCTTAAACACCACTG 92 29 100.0 32 ............................. GACGCTTCACCTGCATCAAATTCTCCTCCAGT 31 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 11 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAATCTGAATCACTGGGTGATAGTGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAATAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GGC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [0.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //